Wall clock time and date at job start Mon Mar 30 2020 03:04:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09000 * 109.46899 * 2 1 4 4 C 1.50689 * 109.46915 * 239.99614 * 2 1 3 5 5 H 1.08001 * 120.00305 * 240.00012 * 4 2 1 6 6 C 1.37877 * 120.00329 * 60.00498 * 4 2 1 7 7 N 1.31516 * 119.99604 * 359.97438 * 6 4 2 8 8 Si 1.86795 * 120.00336 * 179.97438 * 6 4 2 9 9 H 1.48495 * 109.47541 * 59.99641 * 8 6 4 10 10 H 1.48502 * 109.47308 * 179.97438 * 8 6 4 11 11 H 1.48508 * 109.47110 * 299.99631 * 8 6 4 12 12 N 1.46902 * 109.46571 * 119.99821 * 2 1 3 13 13 C 1.46348 * 111.00401 * 58.95343 * 12 2 1 14 14 C 1.53854 * 111.71555 * 178.40296 * 13 12 2 15 15 C 1.51460 * 107.05867 * 56.22354 * 14 13 12 16 16 H 1.08999 * 109.66557 * 56.23635 * 15 14 13 17 17 O 1.42141 * 118.22254 * 182.51193 * 15 14 13 18 18 C 1.45132 * 105.10394 * 162.04580 * 17 15 14 19 19 C 1.55147 * 107.05697 * 332.90288 * 18 17 15 20 20 C 1.53109 * 102.99777 * 358.05998 * 19 18 17 21 21 H 1.09007 * 110.78800 * 269.66730 * 20 19 18 22 22 C 1.47772 * 110.94142 * 290.95321 * 12 2 1 23 23 H 1.08995 * 109.47058 * 180.02562 * 1 2 3 24 24 H 1.09005 * 109.46897 * 300.00420 * 1 2 3 25 25 H 1.08997 * 109.46932 * 60.00261 * 1 2 3 26 26 H 0.97008 * 119.99906 * 180.02562 * 7 6 4 27 27 H 1.09002 * 109.02854 * 57.82729 * 13 12 2 28 28 H 1.08997 * 108.96814 * 298.94210 * 13 12 2 29 29 H 1.08998 * 109.94122 * 296.83196 * 14 13 12 30 30 H 1.09005 * 110.00443 * 175.64850 * 14 13 12 31 31 H 1.08994 * 109.91492 * 213.54392 * 18 17 15 32 32 H 1.09004 * 109.91582 * 92.25706 * 18 17 15 33 33 H 1.09001 * 110.70946 * 116.43579 * 19 18 17 34 34 H 1.08999 * 110.70520 * 239.50321 * 19 18 17 35 35 H 1.08995 * 109.56027 * 65.51867 * 22 12 2 36 36 H 1.09003 * 110.34823 * 304.28188 * 22 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2303 5 1 2.6532 -1.5886 -1.1313 6 6 1.6993 -0.2395 -2.4827 7 7 0.9429 0.8296 -2.6034 8 14 2.3225 -1.1197 -4.0078 9 1 1.8281 -2.5200 -4.0080 10 1 1.8270 -0.4201 -5.2204 11 1 3.8076 -1.1192 -4.0076 12 7 2.0196 -0.6925 1.1995 13 6 1.5301 -2.0709 1.2460 14 6 2.0654 -2.8239 2.4762 15 6 1.6658 -2.0214 3.6970 16 1 0.5849 -1.8808 3.7059 17 8 2.0921 -2.4811 4.9727 18 6 1.9527 -1.3359 5.8532 19 6 2.0975 -0.0656 4.9742 20 6 2.3719 -0.6399 3.5817 21 1 3.4427 -0.7621 3.4178 22 6 1.7303 0.0925 2.4176 23 1 -0.3633 -1.0276 0.0005 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 0.7083 1.1608 -3.4844 27 1 1.8494 -2.5920 0.3434 28 1 0.4408 -2.0590 1.2826 29 1 3.1512 -2.9013 2.4213 30 1 1.6241 -3.8195 2.5251 31 1 2.7350 -1.3536 6.6120 32 1 0.9714 -1.3494 6.3275 33 1 1.1736 0.5127 4.9774 34 1 2.9340 0.5449 5.3142 35 1 0.6521 0.1528 2.5654 36 1 2.1511 1.0944 2.3317 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000724833538.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:04:43 Heat of formation + Delta-G solvation = -58.200912 kcal Electronic energy + Delta-G solvation = -16477.234661 eV Core-core repulsion = 13960.453152 eV Total energy + Delta-G solvation = -2516.781509 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.39489 -38.71689 -35.36367 -33.51444 -33.12605 -30.06913 -29.29167 -27.30315 -24.72460 -24.25232 -22.62940 -21.60368 -20.70334 -18.17961 -17.17997 -16.92728 -16.55119 -16.35866 -15.87885 -15.78652 -14.87964 -14.67445 -14.18379 -13.88510 -13.55604 -13.36375 -12.99930 -12.79217 -12.74442 -12.53799 -12.39670 -12.19913 -12.06483 -11.90527 -11.56297 -11.50171 -11.08548 -10.86658 -10.54296 -10.47458 -8.78117 -8.09939 -6.20883 1.44184 1.45353 1.52909 2.43532 2.75044 3.18986 3.24340 3.68739 3.73789 3.94489 4.15155 4.18577 4.31424 4.41104 4.56001 4.56451 4.69763 4.72625 4.81357 4.88752 4.90549 4.93106 4.96608 5.10440 5.11795 5.16040 5.24772 5.34292 5.54967 5.72142 5.81023 5.92371 6.22251 6.49951 6.77679 6.92903 7.48551 8.95952 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.052705 B = 0.007011 C = 0.006571 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 531.127677 B = 3992.845479 C = 4259.856484 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.221 3.779 3 H 0.007 0.993 4 C -0.517 4.517 5 H 0.058 0.942 6 C 0.012 3.988 7 N -0.921 5.921 8 Si 0.958 3.042 9 H -0.271 1.271 10 H -0.285 1.285 11 H -0.273 1.273 12 N -0.557 5.557 13 C 0.079 3.921 14 C -0.099 4.099 15 C 0.074 3.926 16 H 0.053 0.947 17 O -0.389 6.389 18 C 0.043 3.957 19 C -0.141 4.141 20 C -0.118 4.118 21 H 0.080 0.920 22 C 0.076 3.924 23 H 0.030 0.970 24 H 0.024 0.976 25 H 0.062 0.938 26 H 0.261 0.739 27 H 0.069 0.931 28 H 0.019 0.981 29 H 0.071 0.929 30 H 0.083 0.917 31 H 0.103 0.897 32 H 0.073 0.927 33 H 0.082 0.918 34 H 0.095 0.905 35 H 0.028 0.972 36 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.561 -3.174 13.528 13.907 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.114 3.886 3 H 0.025 0.975 4 C -0.555 4.555 5 H 0.076 0.924 6 C -0.187 4.187 7 N -0.561 5.561 8 Si 0.784 3.216 9 H -0.196 1.196 10 H -0.211 1.211 11 H -0.199 1.199 12 N -0.281 5.281 13 C -0.049 4.049 14 C -0.137 4.137 15 C 0.016 3.984 16 H 0.071 0.929 17 O -0.309 6.309 18 C -0.033 4.033 19 C -0.179 4.179 20 C -0.137 4.137 21 H 0.099 0.901 22 C -0.052 4.052 23 H 0.050 0.950 24 H 0.043 0.957 25 H 0.080 0.920 26 H 0.070 0.930 27 H 0.088 0.912 28 H 0.038 0.962 29 H 0.090 0.910 30 H 0.102 0.898 31 H 0.121 0.879 32 H 0.091 0.909 33 H 0.101 0.899 34 H 0.113 0.887 35 H 0.046 0.954 36 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 1.037 -3.307 13.418 13.858 hybrid contribution -0.809 0.141 -1.148 1.412 sum 0.228 -3.165 12.270 12.674 Atomic orbital electron populations 1.22194 1.00454 0.99085 0.99948 1.18979 0.89896 0.92867 0.86894 0.97469 1.21386 1.30663 1.12549 0.90926 0.92412 1.25685 0.95391 0.95797 1.01812 1.70006 1.37848 1.24194 1.24058 0.85607 0.78690 0.78699 0.78600 1.19638 1.21068 1.19874 1.61234 1.62299 1.02072 1.02502 1.21756 0.96277 0.89271 0.97627 1.21416 1.02105 0.98685 0.91478 1.22512 0.97166 0.94046 0.84683 0.92885 1.88706 1.87516 1.35037 1.19607 1.23803 1.02818 0.83673 0.92985 1.22697 1.03926 0.98067 0.93259 1.22454 1.00823 0.95995 0.94402 0.90146 1.21769 0.97245 0.96921 0.89234 0.95046 0.95742 0.91962 0.92981 0.91219 0.96244 0.91019 0.89834 0.87912 0.90894 0.89906 0.88655 0.95413 0.91388 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -7.64 8.36 71.98 0.60 -7.04 16 2 C 0.22 11.17 2.31 44.17 0.10 11.28 16 3 H 0.01 0.42 8.06 -2.39 -0.02 0.40 16 4 C -0.52 -28.34 7.90 25.60 0.20 -28.14 16 5 H 0.06 3.15 6.74 -2.91 -0.02 3.13 16 6 C 0.01 0.64 5.30 84.65 0.45 1.09 16 7 N -0.92 -52.87 11.32 21.45 0.24 -52.62 16 8 Si 0.96 43.64 29.54 68.60 2.03 45.67 16 9 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 10 H -0.29 -12.75 7.11 99.48 0.71 -12.04 16 11 H -0.27 -12.23 7.11 99.48 0.71 -11.53 16 12 N -0.56 -23.69 4.46 -875.18 -3.90 -27.60 16 13 C 0.08 3.06 4.80 86.70 0.42 3.47 16 14 C -0.10 -3.16 6.11 30.38 0.19 -2.97 16 15 C 0.07 2.22 2.77 30.98 0.09 2.31 16 16 H 0.05 1.62 8.02 -2.39 -0.02 1.60 16 17 O -0.39 -11.17 11.52 -148.98 -1.72 -12.88 16 18 C 0.04 0.89 7.73 72.72 0.56 1.46 16 19 C -0.14 -3.04 6.70 31.37 0.21 -2.83 16 20 C -0.12 -3.45 2.78 -10.27 -0.03 -3.48 16 21 H 0.08 2.55 8.12 -2.38 -0.02 2.53 16 22 C 0.08 2.69 4.87 85.73 0.42 3.11 16 23 H 0.03 1.47 6.40 -2.39 -0.02 1.45 16 24 H 0.02 1.05 6.77 -2.38 -0.02 1.03 16 25 H 0.06 3.36 6.07 -2.39 -0.01 3.35 16 26 H 0.26 14.31 8.31 -92.70 -0.77 13.54 16 27 H 0.07 2.95 6.41 -2.39 -0.02 2.94 16 28 H 0.02 0.77 6.29 -2.39 -0.02 0.75 16 29 H 0.07 2.33 8.12 -2.39 -0.02 2.31 16 30 H 0.08 2.36 8.14 -2.38 -0.02 2.35 16 31 H 0.10 1.70 8.14 -2.39 -0.02 1.68 16 32 H 0.07 1.30 8.14 -2.38 -0.02 1.28 16 33 H 0.08 1.65 8.05 -2.39 -0.02 1.63 16 34 H 0.09 1.72 8.14 -2.39 -0.02 1.70 16 35 H 0.03 0.98 6.76 -2.39 -0.02 0.97 16 36 H 0.07 2.42 8.10 -2.39 -0.02 2.40 16 Total: -1.00 -59.88 272.58 0.90 -58.98 By element: Atomic # 1 Polarization: 9.16 SS G_CDS: 1.04 Total: 10.20 kcal Atomic # 6 Polarization: -24.95 SS G_CDS: 3.20 Total: -21.75 kcal Atomic # 7 Polarization: -76.56 SS G_CDS: -3.66 Total: -80.22 kcal Atomic # 8 Polarization: -11.17 SS G_CDS: -1.72 Total: -12.88 kcal Atomic # 14 Polarization: 43.64 SS G_CDS: 2.03 Total: 45.67 kcal Total: -59.88 0.90 -58.98 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000724833538.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.780 kcal (2) G-P(sol) polarization free energy of solvation -59.879 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.099 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.898 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.981 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.201 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds