Wall clock time and date at job start Mon Mar 30 2020 03:04:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09005 * 109.47251 * 2 1 4 4 C 1.50701 * 109.47132 * 239.99671 * 2 1 3 5 5 H 1.07996 * 120.00141 * 239.99979 * 4 2 1 6 6 C 1.37870 * 119.99801 * 60.00148 * 4 2 1 7 7 N 1.31516 * 120.00146 * 359.97438 * 6 4 2 8 8 Si 1.86800 * 119.99873 * 180.02562 * 6 4 2 9 9 H 1.48496 * 109.47452 * 89.99575 * 8 6 4 10 10 H 1.48504 * 109.47206 * 209.99680 * 8 6 4 11 11 H 1.48499 * 109.47200 * 329.99241 * 8 6 4 12 12 N 1.46900 * 109.47209 * 119.99365 * 2 1 3 13 13 C 1.47127 * 110.99989 * 176.04352 * 12 2 1 14 14 C 1.52906 * 108.42082 * 188.51147 * 13 12 2 15 15 C 1.51392 * 110.97157 * 301.46002 * 14 13 12 16 16 H 1.09000 * 108.91967 * 172.49750 * 15 14 13 17 17 O 1.43488 * 112.48521 * 293.82843 * 15 14 13 18 18 C 1.44077 * 106.30546 * 163.26315 * 17 15 14 19 19 C 1.54201 * 107.30901 * 334.00552 * 18 17 15 20 20 C 1.54187 * 112.45221 * 51.18606 * 15 14 13 21 21 H 1.09001 * 112.45017 * 77.99367 * 20 15 14 22 22 C 1.46506 * 111.00563 * 299.07560 * 12 2 1 23 23 H 1.08994 * 109.46883 * 180.02562 * 1 2 3 24 24 H 1.09000 * 109.47018 * 300.00397 * 1 2 3 25 25 H 1.08997 * 109.47025 * 59.99660 * 1 2 3 26 26 H 0.97001 * 119.99725 * 180.02562 * 7 6 4 27 27 H 1.09002 * 109.68209 * 308.25709 * 13 12 2 28 28 H 1.08999 * 109.67812 * 68.77092 * 13 12 2 29 29 H 1.08995 * 109.17988 * 61.80898 * 14 13 12 30 30 H 1.09008 * 109.17804 * 181.03766 * 14 13 12 31 31 H 1.09000 * 109.87931 * 93.43250 * 18 17 15 32 32 H 1.09003 * 109.87258 * 214.43008 * 18 17 15 33 33 H 1.09001 * 110.52248 * 242.06287 * 19 18 17 34 34 H 1.08997 * 110.52778 * 119.31694 * 19 18 17 35 35 H 1.09005 * 109.20913 * 293.27057 * 22 12 2 36 36 H 1.09002 * 109.20811 * 52.57771 * 22 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.6532 -1.5885 -1.1313 6 6 1.6993 -0.2395 -2.4826 7 7 0.9428 0.8295 -2.6034 8 14 2.3214 -1.1205 -4.0078 9 1 1.3428 -2.1619 -4.4117 10 1 2.4866 -0.1416 -5.1123 11 1 3.6294 -1.7584 -3.7121 12 7 2.0197 -0.6924 1.1995 13 6 3.4874 -0.7946 1.1870 14 6 3.9183 -1.7022 2.3397 15 6 3.4375 -1.1569 3.6676 16 1 3.6440 -1.8907 4.4467 17 8 4.0653 0.0872 4.0096 18 6 3.2565 0.6770 5.0459 19 6 1.8248 0.1293 4.8781 20 6 1.9302 -0.8323 3.6599 21 1 1.3118 -1.7241 3.7627 22 6 1.5681 -0.0154 2.4178 23 1 -0.3633 -1.0276 0.0005 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5139 -0.8899 26 1 0.7082 1.1607 -3.4844 27 1 3.8176 -1.2218 0.2402 28 1 3.9253 0.1952 1.3157 29 1 3.4986 -2.6967 2.1885 30 1 5.0061 -1.7718 2.3532 31 1 3.6473 0.3987 6.0247 32 1 3.2551 1.7621 4.9425 33 1 1.1280 0.9401 4.6657 34 1 1.5173 -0.4163 5.7702 35 1 2.0434 0.9635 2.4813 36 1 0.4866 0.1140 2.3763 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000724833539.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:04:45 Heat of formation + Delta-G solvation = -43.228100 kcal Electronic energy + Delta-G solvation = -16585.141160 eV Core-core repulsion = 14069.008920 eV Total energy + Delta-G solvation = -2516.132239 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.07272 -36.73255 -33.39113 -32.40350 -31.39202 -28.31432 -28.20673 -25.25211 -23.40406 -22.76051 -21.07087 -19.82487 -18.84527 -16.36739 -16.23576 -15.56490 -14.98887 -14.94128 -14.18600 -13.88104 -13.21468 -12.95565 -12.73032 -12.32997 -12.05043 -11.55170 -11.35337 -11.30480 -11.10641 -10.95717 -10.64402 -10.54099 -10.33771 -10.16151 -10.05722 -9.79441 -9.63349 -9.20024 -8.77976 -8.38504 -7.11343 -5.98511 -4.02837 3.32670 3.38874 3.42104 4.10009 4.42196 4.66904 4.89070 5.05005 5.16103 5.23573 5.33194 5.46333 5.63557 5.71479 5.78003 5.85634 5.94805 6.09556 6.18742 6.24407 6.29916 6.39552 6.52158 6.76992 6.82717 6.92375 7.09398 7.16667 7.21128 7.57379 7.77939 7.85727 8.25153 8.37219 8.65689 9.03921 9.62056 11.08424 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.045818 B = 0.007642 C = 0.006996 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 610.968046 B = 3663.021260 C = 4001.524201 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.212 3.788 3 H -0.003 1.003 4 C -0.503 4.503 5 H 0.064 0.936 6 C 0.058 3.942 7 N -0.894 5.894 8 Si 0.896 3.104 9 H -0.281 1.281 10 H -0.288 1.288 11 H -0.274 1.274 12 N -0.530 5.530 13 C 0.063 3.937 14 C -0.109 4.109 15 C 0.085 3.915 16 H 0.051 0.949 17 O -0.371 6.371 18 C 0.048 3.952 19 C -0.155 4.155 20 C -0.109 4.109 21 H 0.095 0.905 22 C 0.060 3.940 23 H 0.034 0.966 24 H 0.007 0.993 25 H 0.084 0.916 26 H 0.260 0.740 27 H 0.088 0.912 28 H 0.026 0.974 29 H 0.080 0.920 30 H 0.063 0.937 31 H 0.053 0.947 32 H 0.078 0.922 33 H 0.077 0.923 34 H 0.070 0.930 35 H 0.024 0.976 36 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.235 -2.213 12.646 13.031 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.106 3.894 3 H 0.015 0.985 4 C -0.541 4.541 5 H 0.082 0.918 6 C -0.143 4.143 7 N -0.533 5.533 8 Si 0.724 3.276 9 H -0.207 1.207 10 H -0.214 1.214 11 H -0.199 1.199 12 N -0.255 5.255 13 C -0.065 4.065 14 C -0.146 4.146 15 C 0.028 3.972 16 H 0.069 0.931 17 O -0.290 6.290 18 C -0.029 4.029 19 C -0.193 4.193 20 C -0.128 4.128 21 H 0.113 0.887 22 C -0.069 4.069 23 H 0.053 0.947 24 H 0.026 0.974 25 H 0.103 0.897 26 H 0.070 0.930 27 H 0.107 0.893 28 H 0.044 0.956 29 H 0.098 0.902 30 H 0.082 0.918 31 H 0.071 0.929 32 H 0.096 0.904 33 H 0.096 0.904 34 H 0.089 0.911 35 H 0.042 0.958 36 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 2.152 -2.475 12.389 12.816 hybrid contribution 0.356 0.402 -0.646 0.840 sum 2.508 -2.073 11.744 12.186 Atomic orbital electron populations 1.21840 0.97801 0.99573 0.99788 1.19218 0.92236 0.92027 0.85936 0.98539 1.21159 1.30944 1.12221 0.89784 0.91818 1.24936 0.95257 0.95069 0.99019 1.69898 1.37010 1.23065 1.23347 0.86525 0.79218 0.79284 0.82533 1.20694 1.21371 1.19921 1.62309 1.08908 1.52124 1.02135 1.21970 0.89138 0.97489 0.97929 1.21264 1.00277 1.00128 0.92977 1.22361 0.91504 0.86229 0.97144 0.93088 1.88828 1.49125 1.35170 1.55870 1.23125 0.90148 0.98487 0.91176 1.23183 0.97486 0.99920 0.98753 1.22745 0.96666 0.98577 0.94825 0.88658 1.22016 1.00330 0.94491 0.90017 0.94703 0.97414 0.89699 0.93029 0.89340 0.95600 0.90167 0.91812 0.92883 0.90396 0.90417 0.91089 0.95833 0.91021 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.27 8.77 37.16 0.33 -2.94 16 2 C 0.21 5.46 2.04 -68.86 -0.14 5.32 16 3 H 0.00 -0.09 8.14 -51.93 -0.42 -0.51 16 4 C -0.50 -13.86 7.83 -34.44 -0.27 -14.13 16 5 H 0.06 1.74 6.44 -52.49 -0.34 1.40 16 6 C 0.06 1.62 5.30 -17.82 -0.09 1.52 16 7 N -0.89 -25.74 11.32 55.43 0.63 -25.11 16 8 Si 0.90 21.45 29.54 -169.99 -5.02 16.43 16 9 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 10 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 11 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 12 N -0.53 -11.66 4.54 -228.22 -1.04 -12.70 16 13 C 0.06 1.30 5.22 -3.75 -0.02 1.28 16 14 C -0.11 -1.81 5.80 -27.59 -0.16 -1.97 16 15 C 0.09 1.32 3.15 -26.92 -0.08 1.24 16 16 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 17 O -0.37 -6.16 10.99 -35.23 -0.39 -6.54 16 18 C 0.05 0.62 7.60 37.79 0.29 0.91 16 19 C -0.16 -1.93 6.34 -24.74 -0.16 -2.08 16 20 C -0.11 -1.67 3.76 -88.63 -0.33 -2.00 16 21 H 0.10 1.38 8.14 -51.93 -0.42 0.96 16 22 C 0.06 1.14 4.13 -4.03 -0.02 1.13 16 23 H 0.03 0.84 8.14 -51.93 -0.42 0.42 16 24 H 0.01 0.16 6.27 -51.93 -0.33 -0.17 16 25 H 0.08 2.29 6.07 -51.93 -0.32 1.98 16 26 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 27 H 0.09 1.95 6.00 -51.93 -0.31 1.64 16 28 H 0.03 0.57 8.03 -51.93 -0.42 0.15 16 29 H 0.08 1.28 8.14 -51.93 -0.42 0.86 16 30 H 0.06 0.98 8.14 -51.92 -0.42 0.56 16 31 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.08 0.96 8.14 -51.93 -0.42 0.53 16 33 H 0.08 0.94 7.76 -51.93 -0.40 0.54 16 34 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 35 H 0.02 0.48 7.73 -51.93 -0.40 0.07 16 36 H 0.07 1.36 5.94 -51.93 -0.31 1.05 16 LS Contribution 273.48 15.07 4.12 4.12 Total: -1.00 -29.19 273.48 -8.12 -37.30 By element: Atomic # 1 Polarization: 3.99 SS G_CDS: -5.76 Total: -1.77 kcal Atomic # 6 Polarization: -11.07 SS G_CDS: -0.66 Total: -11.74 kcal Atomic # 7 Polarization: -37.40 SS G_CDS: -0.41 Total: -37.81 kcal Atomic # 8 Polarization: -6.16 SS G_CDS: -0.39 Total: -6.54 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.43 kcal Total LS contribution 4.12 Total: 4.12 kcal Total: -29.19 -8.12 -37.30 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000724833539.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.924 kcal (2) G-P(sol) polarization free energy of solvation -29.187 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.111 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.117 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.304 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.228 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds