Wall clock time and date at job start Mon Mar 30 2020 03:04:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09005 * 109.47251 * 2 1 4 4 C 1.50701 * 109.47132 * 239.99671 * 2 1 3 5 5 H 1.07996 * 120.00141 * 239.99979 * 4 2 1 6 6 C 1.37870 * 119.99801 * 60.00148 * 4 2 1 7 7 N 1.31516 * 120.00146 * 359.97438 * 6 4 2 8 8 Si 1.86800 * 119.99873 * 180.02562 * 6 4 2 9 9 H 1.48496 * 109.47452 * 89.99575 * 8 6 4 10 10 H 1.48504 * 109.47206 * 209.99680 * 8 6 4 11 11 H 1.48499 * 109.47200 * 329.99241 * 8 6 4 12 12 N 1.46900 * 109.47209 * 119.99365 * 2 1 3 13 13 C 1.47127 * 110.99989 * 176.04352 * 12 2 1 14 14 C 1.52906 * 108.42082 * 188.51147 * 13 12 2 15 15 C 1.51392 * 110.97157 * 301.46002 * 14 13 12 16 16 H 1.09000 * 108.91967 * 172.49750 * 15 14 13 17 17 O 1.43488 * 112.48521 * 293.82843 * 15 14 13 18 18 C 1.44077 * 106.30546 * 163.26315 * 17 15 14 19 19 C 1.54201 * 107.30901 * 334.00552 * 18 17 15 20 20 C 1.54187 * 112.45221 * 51.18606 * 15 14 13 21 21 H 1.09001 * 112.45017 * 77.99367 * 20 15 14 22 22 C 1.46506 * 111.00563 * 299.07560 * 12 2 1 23 23 H 1.08994 * 109.46883 * 180.02562 * 1 2 3 24 24 H 1.09000 * 109.47018 * 300.00397 * 1 2 3 25 25 H 1.08997 * 109.47025 * 59.99660 * 1 2 3 26 26 H 0.97001 * 119.99725 * 180.02562 * 7 6 4 27 27 H 1.09002 * 109.68209 * 308.25709 * 13 12 2 28 28 H 1.08999 * 109.67812 * 68.77092 * 13 12 2 29 29 H 1.08995 * 109.17988 * 61.80898 * 14 13 12 30 30 H 1.09008 * 109.17804 * 181.03766 * 14 13 12 31 31 H 1.09000 * 109.87931 * 93.43250 * 18 17 15 32 32 H 1.09003 * 109.87258 * 214.43008 * 18 17 15 33 33 H 1.09001 * 110.52248 * 242.06287 * 19 18 17 34 34 H 1.08997 * 110.52778 * 119.31694 * 19 18 17 35 35 H 1.09005 * 109.20913 * 293.27057 * 22 12 2 36 36 H 1.09002 * 109.20811 * 52.57771 * 22 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.6532 -1.5885 -1.1313 6 6 1.6993 -0.2395 -2.4826 7 7 0.9428 0.8295 -2.6034 8 14 2.3214 -1.1205 -4.0078 9 1 1.3428 -2.1619 -4.4117 10 1 2.4866 -0.1416 -5.1123 11 1 3.6294 -1.7584 -3.7121 12 7 2.0197 -0.6924 1.1995 13 6 3.4874 -0.7946 1.1870 14 6 3.9183 -1.7022 2.3397 15 6 3.4375 -1.1569 3.6676 16 1 3.6440 -1.8907 4.4467 17 8 4.0653 0.0872 4.0096 18 6 3.2565 0.6770 5.0459 19 6 1.8248 0.1293 4.8781 20 6 1.9302 -0.8323 3.6599 21 1 1.3118 -1.7241 3.7627 22 6 1.5681 -0.0154 2.4178 23 1 -0.3633 -1.0276 0.0005 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5139 -0.8899 26 1 0.7082 1.1607 -3.4844 27 1 3.8176 -1.2218 0.2402 28 1 3.9253 0.1952 1.3157 29 1 3.4986 -2.6967 2.1885 30 1 5.0061 -1.7718 2.3532 31 1 3.6473 0.3987 6.0247 32 1 3.2551 1.7621 4.9425 33 1 1.1280 0.9401 4.6657 34 1 1.5173 -0.4163 5.7702 35 1 2.0434 0.9635 2.4813 36 1 0.4866 0.1140 2.3763 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000724833539.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:04:45 Heat of formation + Delta-G solvation = -62.751302 kcal Electronic energy + Delta-G solvation = -16585.987749 eV Core-core repulsion = 14069.008920 eV Total energy + Delta-G solvation = -2516.978829 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.34410 -38.37665 -35.25509 -33.64148 -33.13632 -30.05219 -29.59174 -27.25004 -25.02222 -24.10362 -22.31040 -21.61015 -20.31228 -18.34132 -17.69286 -16.92256 -16.53830 -16.22246 -15.91718 -15.51682 -14.72724 -14.61904 -14.26279 -13.92055 -13.59818 -13.04919 -12.93140 -12.84588 -12.61383 -12.51871 -12.43661 -12.10745 -12.03604 -11.95868 -11.77667 -11.44145 -11.05608 -10.76628 -10.52018 -10.40972 -8.96161 -8.12014 -6.24118 1.42256 1.42769 1.53230 2.41915 2.99006 3.15055 3.28582 3.66896 3.81180 4.02304 4.14459 4.28113 4.34644 4.45026 4.47134 4.67177 4.71908 4.76903 4.84217 4.87896 4.97207 5.01452 5.05417 5.06816 5.14374 5.21478 5.29175 5.34556 5.51686 5.71673 5.79653 6.05633 6.24888 6.39266 6.74593 6.90763 7.45120 8.94402 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.045818 B = 0.007642 C = 0.006996 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 610.968046 B = 3663.021260 C = 4001.524201 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C 0.215 3.785 3 H -0.048 1.048 4 C -0.519 4.519 5 H 0.062 0.938 6 C 0.009 3.991 7 N -0.922 5.922 8 Si 0.962 3.038 9 H -0.273 1.273 10 H -0.285 1.285 11 H -0.268 1.268 12 N -0.530 5.530 13 C 0.065 3.935 14 C -0.103 4.103 15 C 0.082 3.918 16 H 0.083 0.917 17 O -0.400 6.400 18 C 0.040 3.960 19 C -0.146 4.146 20 C -0.108 4.108 21 H 0.111 0.889 22 C 0.061 3.939 23 H 0.035 0.965 24 H 0.029 0.971 25 H 0.059 0.941 26 H 0.261 0.739 27 H 0.067 0.933 28 H 0.001 0.999 29 H 0.091 0.909 30 H 0.077 0.923 31 H 0.080 0.920 32 H 0.077 0.923 33 H 0.076 0.924 34 H 0.103 0.897 35 H 0.004 0.996 36 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.403 -3.685 14.254 14.918 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.108 3.892 3 H -0.030 1.030 4 C -0.558 4.558 5 H 0.080 0.920 6 C -0.189 4.189 7 N -0.562 5.562 8 Si 0.787 3.213 9 H -0.199 1.199 10 H -0.210 1.210 11 H -0.192 1.192 12 N -0.255 5.255 13 C -0.063 4.063 14 C -0.140 4.140 15 C 0.025 3.975 16 H 0.101 0.899 17 O -0.321 6.321 18 C -0.036 4.036 19 C -0.184 4.184 20 C -0.127 4.127 21 H 0.129 0.871 22 C -0.067 4.067 23 H 0.054 0.946 24 H 0.048 0.952 25 H 0.078 0.922 26 H 0.071 0.929 27 H 0.085 0.915 28 H 0.020 0.980 29 H 0.110 0.890 30 H 0.095 0.905 31 H 0.098 0.902 32 H 0.095 0.905 33 H 0.095 0.905 34 H 0.122 0.878 35 H 0.022 0.978 36 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 2.322 -3.953 14.023 14.753 hybrid contribution 0.315 0.924 -1.117 1.484 sum 2.637 -3.029 12.905 13.516 Atomic orbital electron populations 1.21641 0.97058 0.99397 0.99620 1.19041 0.92811 0.89809 0.87568 1.03012 1.21434 1.31125 1.12312 0.90889 0.92030 1.25757 0.95377 0.95760 1.02042 1.70033 1.37866 1.24274 1.24054 0.85491 0.78918 0.78211 0.78636 1.19873 1.21038 1.19237 1.62313 1.09665 1.51496 1.01983 1.21926 0.88269 0.97090 0.99008 1.21223 1.01237 0.99501 0.92077 1.22441 0.91266 0.86741 0.97034 0.89906 1.88803 1.50212 1.35840 1.57206 1.23356 0.90258 0.98505 0.91469 1.23165 0.97182 0.99467 0.98545 1.22761 0.96952 0.99197 0.93740 0.87097 1.22107 0.99857 0.94311 0.90472 0.94632 0.95245 0.92197 0.92942 0.91476 0.98021 0.89017 0.90472 0.90186 0.90486 0.90482 0.87810 0.97813 0.91230 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -6.00 8.77 71.98 0.63 -5.37 16 2 C 0.21 11.44 2.04 44.17 0.09 11.53 16 3 H -0.05 -2.89 8.14 -2.38 -0.02 -2.91 16 4 C -0.52 -29.34 7.83 25.60 0.20 -29.14 16 5 H 0.06 3.43 6.44 -2.91 -0.02 3.41 16 6 C 0.01 0.51 5.30 84.65 0.45 0.96 16 7 N -0.92 -54.39 11.32 21.45 0.24 -54.14 16 8 Si 0.96 44.36 29.54 68.60 2.03 46.39 16 9 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 10 H -0.28 -12.90 7.11 99.48 0.71 -12.20 16 11 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 12 N -0.53 -23.61 4.54 -875.95 -3.97 -27.59 16 13 C 0.07 2.75 5.22 86.23 0.45 3.20 16 14 C -0.10 -3.27 5.80 30.04 0.17 -3.09 16 15 C 0.08 2.34 3.15 30.47 0.10 2.44 16 16 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 17 O -0.40 -12.57 10.99 -148.98 -1.64 -14.21 16 18 C 0.04 0.94 7.60 72.39 0.55 1.49 16 19 C -0.15 -3.12 6.34 31.88 0.20 -2.92 16 20 C -0.11 -3.01 3.76 -9.51 -0.04 -3.04 16 21 H 0.11 2.80 8.14 -2.39 -0.02 2.78 16 22 C 0.06 2.29 4.13 86.38 0.36 2.65 16 23 H 0.03 1.73 8.14 -2.39 -0.02 1.71 16 24 H 0.03 1.30 6.27 -2.39 -0.01 1.29 16 25 H 0.06 3.32 6.07 -2.39 -0.01 3.31 16 26 H 0.26 14.61 8.31 -92.71 -0.77 13.84 16 27 H 0.07 3.06 6.00 -2.39 -0.01 3.04 16 28 H 0.00 0.07 8.03 -2.39 -0.02 0.05 16 29 H 0.09 2.71 8.14 -2.39 -0.02 2.69 16 30 H 0.08 2.24 8.14 -2.38 -0.02 2.22 16 31 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 32 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16 33 H 0.08 1.67 7.76 -2.39 -0.02 1.65 16 34 H 0.10 1.60 8.14 -2.39 -0.02 1.58 16 35 H 0.00 0.15 7.73 -2.38 -0.02 0.13 16 36 H 0.07 2.60 5.94 -2.39 -0.01 2.58 16 Total: -1.00 -64.27 273.48 0.87 -63.41 By element: Atomic # 1 Polarization: 6.41 SS G_CDS: 1.04 Total: 7.45 kcal Atomic # 6 Polarization: -24.47 SS G_CDS: 3.16 Total: -21.31 kcal Atomic # 7 Polarization: -78.00 SS G_CDS: -3.73 Total: -81.73 kcal Atomic # 8 Polarization: -12.57 SS G_CDS: -1.64 Total: -14.21 kcal Atomic # 14 Polarization: 44.36 SS G_CDS: 2.03 Total: 46.39 kcal Total: -64.27 0.87 -63.41 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000724833539.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.655 kcal (2) G-P(sol) polarization free energy of solvation -64.272 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.617 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.866 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.406 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.751 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds