Wall clock time and date at job start Mon Mar 30 2020 03:04:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09002 * 109.47140 * 2 1 4 4 C 1.50698 * 109.47248 * 239.99917 * 2 1 3 5 5 H 1.07999 * 120.00122 * 240.00082 * 4 2 1 6 6 C 1.37882 * 119.99885 * 59.99733 * 4 2 1 7 7 N 1.31510 * 120.00248 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 119.99976 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.47100 * 60.00204 * 8 6 4 10 10 H 1.48500 * 109.46949 * 180.02562 * 8 6 4 11 11 H 1.48502 * 109.47084 * 300.00190 * 8 6 4 12 12 N 1.46901 * 109.47232 * 119.99958 * 2 1 3 13 13 C 1.46357 * 111.00211 * 172.58412 * 12 2 1 14 14 C 1.53869 * 111.62063 * 181.78848 * 13 12 2 15 15 C 1.51264 * 107.12882 * 304.08165 * 14 13 12 16 16 H 1.09002 * 109.40739 * 304.72894 * 15 14 13 17 17 O 1.41247 * 118.44579 * 180.13790 * 15 14 13 18 18 C 1.44621 * 108.06355 * 208.72379 * 17 15 14 19 19 C 1.57942 * 107.53182 * 6.46306 * 18 17 15 20 20 C 1.53776 * 99.95518 * 21.39486 * 19 18 17 21 21 H 1.09002 * 111.41275 * 80.18095 * 20 19 18 22 22 C 1.47619 * 110.99991 * 300.00412 * 12 2 1 23 23 H 1.09002 * 109.47140 * 180.02562 * 1 2 3 24 24 H 1.08997 * 109.47590 * 299.99972 * 1 2 3 25 25 H 1.09004 * 109.47080 * 60.00526 * 1 2 3 26 26 H 0.96995 * 120.00541 * 180.02562 * 7 6 4 27 27 H 1.09003 * 109.04928 * 302.34112 * 13 12 2 28 28 H 1.09004 * 109.04725 * 61.30732 * 13 12 2 29 29 H 1.09000 * 109.92315 * 63.48001 * 14 13 12 30 30 H 1.08996 * 109.92811 * 184.67851 * 14 13 12 31 31 H 1.08998 * 109.87216 * 125.80349 * 18 17 15 32 32 H 1.09005 * 109.87451 * 246.93830 * 18 17 15 33 33 H 1.08994 * 111.11865 * 264.02204 * 19 18 17 34 34 H 1.09002 * 112.11743 * 139.16159 * 19 18 17 35 35 H 1.09000 * 109.92099 * 54.98838 * 22 12 2 36 36 H 1.09002 * 109.91864 * 293.80457 * 22 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6532 -1.5885 -1.1313 6 6 1.6992 -0.2394 -2.4827 7 7 0.9435 0.8301 -2.6035 8 14 2.3225 -1.1195 -4.0080 9 1 1.8281 -2.5198 -4.0082 10 1 1.8278 -0.4192 -5.2205 11 1 3.8075 -1.1189 -4.0077 12 7 2.0197 -0.6925 1.1994 13 6 3.4720 -0.8667 1.1484 14 6 3.9950 -1.6300 2.3777 15 6 3.5356 -0.8704 3.6025 16 1 3.8724 0.1641 3.5345 17 8 3.8918 -1.3678 4.8756 18 6 2.8693 -0.9662 5.8161 19 6 1.7054 -0.2870 4.9923 20 6 1.9809 -0.8832 3.6019 21 1 1.5870 -1.8961 3.5181 22 6 1.5463 -0.0232 2.4271 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3634 0.5138 0.8899 25 1 -0.3633 0.5138 -0.8901 26 1 0.7088 1.1613 -3.4844 27 1 3.7322 -1.4222 0.2474 28 1 3.9467 0.1138 1.1112 29 1 3.5836 -2.6394 2.3909 30 1 5.0839 -1.6719 2.3535 31 1 2.4854 -1.8404 6.3419 32 1 3.2820 -0.2535 6.5302 33 1 1.8124 0.7977 4.9826 34 1 0.7204 -0.5790 5.3564 35 1 0.4596 0.0598 2.4094 36 1 1.9941 0.9675 2.5062 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000724833540.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:04:47 Heat of formation + Delta-G solvation = -38.930396 kcal Electronic energy + Delta-G solvation = -16420.387625 eV Core-core repulsion = 13904.441748 eV Total energy + Delta-G solvation = -2515.945877 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.06859 -37.02719 -33.61858 -32.25463 -31.42436 -28.50312 -28.07852 -25.26509 -23.34283 -22.41486 -21.06513 -20.06074 -19.42113 -16.34647 -16.16232 -15.67874 -15.08573 -14.79573 -14.31078 -13.88294 -13.24371 -13.14496 -12.83751 -12.43909 -12.07846 -11.79840 -11.58624 -11.17941 -10.98161 -10.76645 -10.65398 -10.62874 -10.54475 -10.11147 -10.06561 -9.91078 -9.61639 -9.26889 -8.82891 -8.42556 -7.12263 -6.02443 -4.07507 3.31610 3.36011 3.38843 3.87291 4.38595 4.61396 4.77062 4.90755 5.06140 5.28273 5.35018 5.45008 5.64626 5.67294 5.75143 5.78827 5.92593 5.97386 6.09386 6.20068 6.25029 6.36234 6.52939 6.70371 6.71164 6.86026 7.04974 7.15036 7.19310 7.51772 7.74362 7.81537 8.21064 8.31312 8.59879 8.98869 9.57834 11.04262 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.050039 B = 0.007143 C = 0.006450 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 559.434341 B = 3919.153393 C = 4340.079366 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.217 3.783 3 H -0.003 1.003 4 C -0.508 4.508 5 H 0.064 0.936 6 C 0.060 3.940 7 N -0.893 5.893 8 Si 0.897 3.103 9 H -0.276 1.276 10 H -0.288 1.288 11 H -0.278 1.278 12 N -0.546 5.546 13 C 0.075 3.925 14 C -0.108 4.108 15 C 0.075 3.925 16 H 0.050 0.950 17 O -0.378 6.378 18 C 0.051 3.949 19 C -0.148 4.148 20 C -0.123 4.123 21 H 0.094 0.906 22 C 0.070 3.930 23 H 0.034 0.966 24 H 0.008 0.992 25 H 0.085 0.915 26 H 0.261 0.739 27 H 0.094 0.906 28 H 0.018 0.982 29 H 0.073 0.927 30 H 0.066 0.934 31 H 0.070 0.930 32 H 0.063 0.937 33 H 0.074 0.926 34 H 0.082 0.918 35 H 0.078 0.922 36 H 0.023 0.977 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.919 -1.707 12.021 12.292 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.111 3.889 3 H 0.015 0.985 4 C -0.546 4.546 5 H 0.082 0.918 6 C -0.142 4.142 7 N -0.532 5.532 8 Si 0.724 3.276 9 H -0.202 1.202 10 H -0.214 1.214 11 H -0.203 1.203 12 N -0.272 5.272 13 C -0.054 4.054 14 C -0.146 4.146 15 C 0.018 3.982 16 H 0.068 0.932 17 O -0.297 6.297 18 C -0.026 4.026 19 C -0.186 4.186 20 C -0.142 4.142 21 H 0.112 0.888 22 C -0.058 4.058 23 H 0.053 0.947 24 H 0.027 0.973 25 H 0.103 0.897 26 H 0.071 0.929 27 H 0.112 0.888 28 H 0.036 0.964 29 H 0.092 0.908 30 H 0.085 0.915 31 H 0.089 0.911 32 H 0.082 0.918 33 H 0.093 0.907 34 H 0.101 0.899 35 H 0.096 0.904 36 H 0.041 0.959 Dipole moment (debyes) X Y Z Total from point charges 1.836 -2.137 11.899 12.228 hybrid contribution 0.418 0.576 -0.849 1.108 sum 2.255 -1.561 11.050 11.385 Atomic orbital electron populations 1.21844 0.97677 0.99653 0.99850 1.19174 0.92303 0.91868 0.85522 0.98503 1.21164 1.31257 1.12364 0.89831 0.91786 1.24936 0.95149 0.95044 0.99034 1.69878 1.36815 1.22974 1.23556 0.86585 0.79102 0.79779 0.82091 1.20186 1.21356 1.20315 1.61276 1.10439 1.53099 1.02385 1.21859 0.88395 0.98107 0.96999 1.21547 1.00326 1.00245 0.92533 1.22418 0.94364 0.96983 0.84465 0.93244 1.88221 1.45506 1.77940 1.18072 1.23950 0.88013 0.98650 0.91976 1.23324 0.98793 1.00645 0.95853 1.22767 0.96149 1.01514 0.93743 0.88813 1.21842 1.00662 0.93873 0.89464 0.94655 0.97336 0.89671 0.92906 0.88821 0.96356 0.90786 0.91498 0.91139 0.91846 0.90723 0.89945 0.90407 0.95862 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.21 8.76 37.16 0.33 -2.88 16 2 C 0.22 5.45 2.12 -68.86 -0.15 5.30 16 3 H 0.00 -0.07 8.14 -51.93 -0.42 -0.49 16 4 C -0.51 -13.73 7.90 -34.44 -0.27 -14.00 16 5 H 0.06 1.71 6.14 -52.49 -0.32 1.39 16 6 C 0.06 1.63 5.30 -17.82 -0.09 1.54 16 7 N -0.89 -25.30 11.32 55.43 0.63 -24.68 16 8 Si 0.90 21.15 29.54 -169.99 -5.02 16.13 16 9 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 10 H -0.29 -6.76 7.11 56.52 0.40 -6.35 16 11 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 12 N -0.55 -11.69 4.41 -227.98 -1.01 -12.69 16 13 C 0.07 1.48 5.10 -3.67 -0.02 1.46 16 14 C -0.11 -1.81 6.12 -27.15 -0.17 -1.98 16 15 C 0.08 1.22 2.80 -26.29 -0.07 1.15 16 16 H 0.05 0.83 7.89 -51.93 -0.41 0.42 16 17 O -0.38 -5.97 11.37 -35.02 -0.40 -6.37 16 18 C 0.05 0.62 7.89 39.87 0.31 0.93 16 19 C -0.15 -1.81 6.81 -23.62 -0.16 -1.97 16 20 C -0.12 -1.90 2.84 -89.43 -0.25 -2.16 16 21 H 0.09 1.53 8.14 -51.93 -0.42 1.11 16 22 C 0.07 1.27 4.91 -3.97 -0.02 1.25 16 23 H 0.03 0.84 8.14 -51.93 -0.42 0.42 16 24 H 0.01 0.17 6.30 -51.93 -0.33 -0.16 16 25 H 0.08 2.26 6.07 -51.93 -0.32 1.95 16 26 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 27 H 0.09 1.98 5.91 -51.93 -0.31 1.67 16 28 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 29 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 30 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 31 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 32 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.07 0.88 8.13 -51.93 -0.42 0.46 16 34 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 35 H 0.08 1.41 6.10 -51.93 -0.32 1.10 16 36 H 0.02 0.43 7.97 -51.93 -0.41 0.02 16 LS Contribution 274.62 15.07 4.14 4.14 Total: -1.00 -28.33 274.62 -8.00 -36.33 By element: Atomic # 1 Polarization: 4.28 SS G_CDS: -5.77 Total: -1.50 kcal Atomic # 6 Polarization: -10.80 SS G_CDS: -0.57 Total: -11.36 kcal Atomic # 7 Polarization: -36.99 SS G_CDS: -0.38 Total: -37.37 kcal Atomic # 8 Polarization: -5.97 SS G_CDS: -0.40 Total: -6.37 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.13 kcal Total LS contribution 4.14 Total: 4.14 kcal Total: -28.33 -8.00 -36.33 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000724833540.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.599 kcal (2) G-P(sol) polarization free energy of solvation -28.333 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.932 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.998 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.332 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.930 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds