Wall clock time and date at job start Mon Mar 30 2020 03:04:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09002 * 109.47140 * 2 1 4 4 C 1.50698 * 109.47248 * 239.99917 * 2 1 3 5 5 H 1.07999 * 120.00122 * 240.00082 * 4 2 1 6 6 C 1.37882 * 119.99885 * 59.99733 * 4 2 1 7 7 N 1.31510 * 120.00248 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 119.99976 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.47100 * 60.00204 * 8 6 4 10 10 H 1.48500 * 109.46949 * 180.02562 * 8 6 4 11 11 H 1.48502 * 109.47084 * 300.00190 * 8 6 4 12 12 N 1.46901 * 109.47232 * 119.99958 * 2 1 3 13 13 C 1.46357 * 111.00211 * 172.58412 * 12 2 1 14 14 C 1.53869 * 111.62063 * 181.78848 * 13 12 2 15 15 C 1.51264 * 107.12882 * 304.08165 * 14 13 12 16 16 H 1.09002 * 109.40739 * 304.72894 * 15 14 13 17 17 O 1.41247 * 118.44579 * 180.13790 * 15 14 13 18 18 C 1.44621 * 108.06355 * 208.72379 * 17 15 14 19 19 C 1.57942 * 107.53182 * 6.46306 * 18 17 15 20 20 C 1.53776 * 99.95518 * 21.39486 * 19 18 17 21 21 H 1.09002 * 111.41275 * 80.18095 * 20 19 18 22 22 C 1.47619 * 110.99991 * 300.00412 * 12 2 1 23 23 H 1.09002 * 109.47140 * 180.02562 * 1 2 3 24 24 H 1.08997 * 109.47590 * 299.99972 * 1 2 3 25 25 H 1.09004 * 109.47080 * 60.00526 * 1 2 3 26 26 H 0.96995 * 120.00541 * 180.02562 * 7 6 4 27 27 H 1.09003 * 109.04928 * 302.34112 * 13 12 2 28 28 H 1.09004 * 109.04725 * 61.30732 * 13 12 2 29 29 H 1.09000 * 109.92315 * 63.48001 * 14 13 12 30 30 H 1.08996 * 109.92811 * 184.67851 * 14 13 12 31 31 H 1.08998 * 109.87216 * 125.80349 * 18 17 15 32 32 H 1.09005 * 109.87451 * 246.93830 * 18 17 15 33 33 H 1.08994 * 111.11865 * 264.02204 * 19 18 17 34 34 H 1.09002 * 112.11743 * 139.16159 * 19 18 17 35 35 H 1.09000 * 109.92099 * 54.98838 * 22 12 2 36 36 H 1.09002 * 109.91864 * 293.80457 * 22 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6532 -1.5885 -1.1313 6 6 1.6992 -0.2394 -2.4827 7 7 0.9435 0.8301 -2.6035 8 14 2.3225 -1.1195 -4.0080 9 1 1.8281 -2.5198 -4.0082 10 1 1.8278 -0.4192 -5.2205 11 1 3.8075 -1.1189 -4.0077 12 7 2.0197 -0.6925 1.1994 13 6 3.4720 -0.8667 1.1484 14 6 3.9950 -1.6300 2.3777 15 6 3.5356 -0.8704 3.6025 16 1 3.8724 0.1641 3.5345 17 8 3.8918 -1.3678 4.8756 18 6 2.8693 -0.9662 5.8161 19 6 1.7054 -0.2870 4.9923 20 6 1.9809 -0.8832 3.6019 21 1 1.5870 -1.8961 3.5181 22 6 1.5463 -0.0232 2.4271 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3634 0.5138 0.8899 25 1 -0.3633 0.5138 -0.8901 26 1 0.7088 1.1613 -3.4844 27 1 3.7322 -1.4222 0.2474 28 1 3.9467 0.1138 1.1112 29 1 3.5836 -2.6394 2.3909 30 1 5.0839 -1.6719 2.3535 31 1 2.4854 -1.8404 6.3419 32 1 3.2820 -0.2535 6.5302 33 1 1.8124 0.7977 4.9826 34 1 0.7204 -0.5790 5.3564 35 1 0.4596 0.0598 2.4094 36 1 1.9941 0.9675 2.5062 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000724833540.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:04:47 Heat of formation + Delta-G solvation = -57.269014 kcal Electronic energy + Delta-G solvation = -16421.182847 eV Core-core repulsion = 13904.441748 eV Total energy + Delta-G solvation = -2516.741099 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.34861 -38.59349 -35.43466 -33.50362 -33.21049 -29.87981 -29.76704 -27.21991 -24.84966 -23.77398 -22.29817 -21.67206 -21.03693 -18.35534 -17.47255 -17.10356 -16.49728 -16.27044 -15.82481 -15.54505 -14.85789 -14.64449 -14.32176 -13.95574 -13.54522 -13.34050 -13.08343 -12.91791 -12.67235 -12.40763 -12.27208 -12.15162 -11.98348 -11.88966 -11.71274 -11.56847 -11.17083 -10.74575 -10.49551 -10.42397 -8.89824 -8.11494 -6.23657 1.43214 1.44715 1.52203 2.42005 2.70616 3.14540 3.23013 3.58348 3.67711 3.92753 4.13540 4.18859 4.35043 4.39975 4.53979 4.57044 4.69105 4.70681 4.82879 4.85451 4.91643 4.98207 5.03539 5.05561 5.11391 5.22004 5.26126 5.35479 5.52630 5.72375 5.80864 6.03015 6.25750 6.39313 6.75485 6.91393 7.45790 8.94366 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.050039 B = 0.007143 C = 0.006450 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 559.434341 B = 3919.153393 C = 4340.079366 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C 0.220 3.780 3 H -0.040 1.040 4 C -0.524 4.524 5 H 0.062 0.938 6 C 0.012 3.988 7 N -0.920 5.920 8 Si 0.959 3.041 9 H -0.271 1.271 10 H -0.285 1.285 11 H -0.272 1.272 12 N -0.552 5.552 13 C 0.078 3.922 14 C -0.099 4.099 15 C 0.079 3.921 16 H 0.042 0.958 17 O -0.394 6.394 18 C 0.045 3.955 19 C -0.138 4.138 20 C -0.118 4.118 21 H 0.089 0.911 22 C 0.071 3.929 23 H 0.032 0.968 24 H 0.032 0.968 25 H 0.060 0.940 26 H 0.262 0.738 27 H 0.075 0.925 28 H 0.006 0.994 29 H 0.075 0.925 30 H 0.082 0.918 31 H 0.089 0.911 32 H 0.083 0.917 33 H 0.079 0.921 34 H 0.105 0.895 35 H 0.079 0.921 36 H 0.018 0.982 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.069 -2.528 13.421 13.812 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.114 3.886 3 H -0.022 1.022 4 C -0.562 4.562 5 H 0.080 0.920 6 C -0.187 4.187 7 N -0.560 5.560 8 Si 0.785 3.215 9 H -0.196 1.196 10 H -0.210 1.210 11 H -0.197 1.197 12 N -0.277 5.277 13 C -0.051 4.051 14 C -0.137 4.137 15 C 0.021 3.979 16 H 0.060 0.940 17 O -0.313 6.313 18 C -0.030 4.030 19 C -0.176 4.176 20 C -0.138 4.138 21 H 0.107 0.893 22 C -0.057 4.057 23 H 0.051 0.949 24 H 0.050 0.950 25 H 0.078 0.922 26 H 0.071 0.929 27 H 0.094 0.906 28 H 0.024 0.976 29 H 0.093 0.907 30 H 0.100 0.900 31 H 0.107 0.893 32 H 0.101 0.899 33 H 0.098 0.902 34 H 0.123 0.877 35 H 0.097 0.903 36 H 0.037 0.963 Dipole moment (debyes) X Y Z Total from point charges 1.991 -2.965 13.327 13.797 hybrid contribution 0.375 0.858 -1.222 1.540 sum 2.366 -2.108 12.104 12.512 Atomic orbital electron populations 1.21655 0.97083 0.99316 0.99779 1.18982 0.92760 0.89980 0.86919 1.02243 1.21467 1.31338 1.12439 0.90963 0.91959 1.25718 0.95318 0.95729 1.01923 1.70008 1.37708 1.24158 1.24144 0.85589 0.78721 0.78720 0.78475 1.19621 1.20999 1.19683 1.61233 1.11343 1.52794 1.02328 1.21799 0.87562 0.97628 0.98072 1.21408 1.01153 0.99663 0.91489 1.22262 0.94639 0.96327 0.84712 0.93994 1.88199 1.46941 1.78197 1.18005 1.24205 0.87294 1.00043 0.91487 1.23338 1.00135 1.00866 0.93283 1.22689 0.95701 1.00880 0.94481 0.89280 1.21886 1.00582 0.94058 0.89162 0.94905 0.94962 0.92167 0.92912 0.90636 0.97588 0.90666 0.89957 0.89282 0.89919 0.90191 0.87657 0.90298 0.96346 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.89 8.76 71.98 0.63 -5.26 16 2 C 0.22 11.31 2.12 44.17 0.09 11.41 16 3 H -0.04 -2.30 8.14 -2.39 -0.02 -2.32 16 4 C -0.52 -28.83 7.90 25.60 0.20 -28.63 16 5 H 0.06 3.38 6.14 -2.91 -0.02 3.36 16 6 C 0.01 0.65 5.30 84.66 0.45 1.10 16 7 N -0.92 -53.09 11.32 21.45 0.24 -52.85 16 8 Si 0.96 43.59 29.54 68.60 2.03 45.62 16 9 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 10 H -0.28 -12.68 7.11 99.48 0.71 -11.98 16 11 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 12 N -0.55 -23.73 4.41 -875.19 -3.86 -27.59 16 13 C 0.08 3.10 5.10 86.70 0.44 3.55 16 14 C -0.10 -3.22 6.12 30.32 0.19 -3.03 16 15 C 0.08 2.41 2.80 30.88 0.09 2.50 16 16 H 0.04 1.35 7.89 -2.39 -0.02 1.33 16 17 O -0.39 -11.42 11.37 -148.21 -1.68 -13.11 16 18 C 0.05 0.95 7.89 73.74 0.58 1.53 16 19 C -0.14 -2.93 6.81 32.61 0.22 -2.71 16 20 C -0.12 -3.45 2.84 -10.03 -0.03 -3.48 16 21 H 0.09 2.71 8.14 -2.39 -0.02 2.69 16 22 C 0.07 2.53 4.91 85.82 0.42 2.95 16 23 H 0.03 1.57 8.14 -2.39 -0.02 1.55 16 24 H 0.03 1.37 6.30 -2.39 -0.02 1.36 16 25 H 0.06 3.26 6.07 -2.38 -0.01 3.24 16 26 H 0.26 14.38 8.31 -92.71 -0.77 13.61 16 27 H 0.08 3.26 5.91 -2.39 -0.01 3.24 16 28 H 0.01 0.25 8.14 -2.39 -0.02 0.23 16 29 H 0.07 2.43 8.14 -2.39 -0.02 2.41 16 30 H 0.08 2.40 8.14 -2.39 -0.02 2.38 16 31 H 0.09 1.56 8.14 -2.39 -0.02 1.54 16 32 H 0.08 1.44 8.14 -2.38 -0.02 1.42 16 33 H 0.08 1.63 8.13 -2.39 -0.02 1.61 16 34 H 0.10 1.78 8.14 -2.39 -0.02 1.76 16 35 H 0.08 2.77 6.10 -2.39 -0.01 2.76 16 36 H 0.02 0.68 7.97 -2.39 -0.02 0.66 16 Total: -1.00 -60.80 274.62 1.05 -59.75 By element: Atomic # 1 Polarization: 7.21 SS G_CDS: 1.04 Total: 8.25 kcal Atomic # 6 Polarization: -23.36 SS G_CDS: 3.29 Total: -20.07 kcal Atomic # 7 Polarization: -76.82 SS G_CDS: -3.62 Total: -80.44 kcal Atomic # 8 Polarization: -11.42 SS G_CDS: -1.68 Total: -13.11 kcal Atomic # 14 Polarization: 43.59 SS G_CDS: 2.03 Total: 45.62 kcal Total: -60.80 1.05 -59.75 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000724833540.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.478 kcal (2) G-P(sol) polarization free energy of solvation -60.800 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.321 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.052 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.747 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.269 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds