Wall clock time and date at job start Mon Mar 30 2020 02:59:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47070 * 2 1 4 4 C 1.53000 * 109.47233 * 239.99626 * 2 1 3 5 5 C 1.50698 * 109.46984 * 175.00062 * 4 2 1 6 6 H 1.08008 * 120.00253 * 0.02562 * 5 4 2 7 7 C 1.37881 * 120.00032 * 180.02562 * 5 4 2 8 8 N 1.31516 * 119.99811 * 359.97438 * 7 5 4 9 9 Si 1.86800 * 119.99974 * 180.02562 * 7 5 4 10 10 H 1.48492 * 109.47344 * 89.99767 * 9 7 5 11 11 H 1.48499 * 109.46707 * 209.99826 * 9 7 5 12 12 H 1.48500 * 109.47223 * 329.99502 * 9 7 5 13 13 N 1.46901 * 109.46860 * 120.00150 * 2 1 3 14 14 C 1.46900 * 110.99890 * 274.99873 * 13 2 1 15 15 H 1.09001 * 115.55991 * 9.26632 * 14 13 2 16 16 C 1.53123 * 117.51818 * 223.46388 * 14 13 2 17 17 C 1.52460 * 117.51475 * 154.99920 * 14 13 2 18 18 C 1.53255 * 128.58376 * 349.85130 * 17 14 13 19 19 C 1.53894 * 86.88499 * 194.88623 * 18 17 14 20 20 O 1.42898 * 113.66319 * 139.57862 * 19 18 17 21 21 C 1.53256 * 128.58568 * 225.04839 * 17 14 13 22 22 H 1.08996 * 109.47407 * 300.00400 * 1 2 3 23 23 H 1.09000 * 109.46986 * 60.00171 * 1 2 3 24 24 H 1.09002 * 109.47075 * 179.97438 * 1 2 3 25 25 H 1.08990 * 109.47170 * 295.00238 * 4 2 1 26 26 H 1.09001 * 109.46952 * 55.00315 * 4 2 1 27 27 H 0.96997 * 119.99784 * 180.02562 * 8 7 5 28 28 H 1.00898 * 111.00476 * 38.95263 * 13 2 1 29 29 H 1.09002 * 117.50960 * 359.97438 * 16 14 13 30 30 H 1.08997 * 117.51815 * 145.09901 * 16 14 13 31 31 H 1.08996 * 113.64652 * 309.38396 * 18 17 14 32 32 H 1.09000 * 113.64958 * 80.39214 * 18 17 14 33 33 H 1.08996 * 113.58934 * 270.39605 * 19 18 17 34 34 H 0.96701 * 113.99402 * 82.30172 * 20 19 18 35 35 H 1.08996 * 113.65079 * 279.61040 * 21 17 14 36 36 H 1.09004 * 113.64408 * 50.52696 * 21 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 3.5419 -0.6150 -1.3126 6 1 4.0791 -0.0862 -0.5390 7 6 4.2305 -1.1928 -2.3582 8 7 3.5765 -1.8371 -3.2999 9 14 6.0922 -1.0615 -2.4364 10 1 6.7000 -2.2147 -1.7252 11 1 6.5296 -1.0687 -3.8555 12 1 6.5269 0.2032 -1.7908 13 7 2.0196 -0.6925 1.1994 14 6 2.0824 0.2225 2.3469 15 1 1.6232 1.1994 2.1951 16 6 3.3258 0.1554 3.2381 17 6 1.9932 -0.3885 3.7408 18 6 1.6343 -1.8259 4.1331 19 6 1.4389 -1.2972 5.5651 20 8 0.3090 -1.8599 6.2350 21 6 1.1601 0.0806 4.9386 22 1 -0.3634 0.5139 0.8899 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 1.7517 -1.7715 -1.2055 26 1 1.6055 -0.2618 -2.1369 27 1 4.0609 -2.2439 -4.0352 28 1 1.4495 -1.4979 1.4101 29 1 4.0968 -0.5681 2.9730 30 1 3.6850 1.0883 3.6725 31 1 0.7158 -2.1886 3.6718 32 1 2.4641 -2.5260 4.0351 33 1 2.3461 -1.3264 6.1685 34 1 0.4777 -2.7258 6.6309 35 1 1.6095 0.9089 5.4862 36 1 0.1098 0.2500 4.7011 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000724971016.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:59:40 Heat of formation + Delta-G solvation = -32.234368 kcal Electronic energy + Delta-G solvation = -15589.472950 eV Core-core repulsion = 13073.817435 eV Total energy + Delta-G solvation = -2515.655515 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.76835 -38.17531 -36.56173 -34.65451 -33.23574 -30.06945 -28.95605 -26.72248 -25.09637 -23.46994 -22.08570 -21.43820 -19.28416 -18.51037 -18.28660 -16.86377 -16.66100 -16.32013 -15.48417 -14.95112 -14.78573 -14.45433 -14.10022 -13.97921 -13.47836 -13.43014 -13.23055 -13.05979 -12.71553 -12.51007 -12.35195 -12.07840 -11.92053 -11.76614 -11.41407 -11.15553 -11.01897 -10.77107 -10.49964 -10.44669 -8.89323 -8.09195 -6.14016 1.41659 1.43007 1.53730 2.47931 2.79339 3.06543 3.25705 3.49369 3.67131 3.71814 3.84038 4.05534 4.22481 4.26888 4.37089 4.43502 4.57899 4.69064 4.81290 4.84094 4.90142 4.96693 5.04146 5.19662 5.21714 5.27149 5.29611 5.36067 5.50941 5.69125 5.90141 6.35159 6.51301 6.68211 6.92874 6.99838 7.51527 9.03106 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.033956 B = 0.006085 C = 0.005614 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 824.387734 B = 4600.434537 C = 4986.349548 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.101 3.899 3 H 0.060 0.940 4 C 0.037 3.963 5 C -0.498 4.498 6 H 0.056 0.944 7 C -0.008 4.008 8 N -0.942 5.942 9 Si 0.959 3.041 10 H -0.278 1.278 11 H -0.286 1.286 12 H -0.266 1.266 13 N -0.647 5.647 14 C 0.031 3.969 15 H 0.097 0.903 16 C -0.139 4.139 17 C -0.166 4.166 18 C -0.128 4.128 19 C 0.091 3.909 20 O -0.578 6.578 21 C -0.085 4.085 22 H 0.063 0.937 23 H 0.057 0.943 24 H 0.050 0.950 25 H -0.011 1.011 26 H -0.007 1.007 27 H 0.258 0.742 28 H 0.335 0.665 29 H 0.085 0.915 30 H 0.111 0.889 31 H 0.081 0.919 32 H 0.068 0.932 33 H 0.100 0.900 34 H 0.395 0.605 35 H 0.086 0.914 36 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.180 2.416 18.037 18.672 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.009 4.009 3 H 0.079 0.921 4 C 0.000 4.000 5 C -0.536 4.536 6 H 0.074 0.926 7 C -0.203 4.203 8 N -0.584 5.584 9 Si 0.785 3.215 10 H -0.204 1.204 11 H -0.211 1.211 12 H -0.190 1.190 13 N -0.277 5.277 14 C -0.080 4.080 15 H 0.115 0.885 16 C -0.177 4.177 17 C -0.167 4.167 18 C -0.165 4.165 19 C 0.032 3.968 20 O -0.386 6.386 21 C -0.123 4.123 22 H 0.082 0.918 23 H 0.076 0.924 24 H 0.069 0.931 25 H 0.007 0.993 26 H 0.012 0.988 27 H 0.067 0.933 28 H 0.154 0.846 29 H 0.104 0.896 30 H 0.129 0.871 31 H 0.099 0.901 32 H 0.087 0.913 33 H 0.118 0.882 34 H 0.245 0.755 35 H 0.105 0.895 36 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -3.768 2.953 17.507 18.150 hybrid contribution 0.271 -0.671 -0.388 0.821 sum -3.498 2.283 17.120 17.622 Atomic orbital electron populations 1.22434 0.96755 1.01641 1.01903 1.21527 0.91991 0.96862 0.90484 0.92148 1.18996 0.95271 0.94100 0.91658 1.21480 0.93310 1.32316 1.06487 0.92559 1.25884 1.03021 0.95694 0.95739 1.70099 1.37105 1.38104 1.13112 0.85540 0.80490 0.78623 0.76890 1.20393 1.21143 1.19049 1.60095 1.57123 1.08520 1.01941 1.22345 1.02417 0.96697 0.86508 0.88504 1.23071 0.90693 1.02487 1.01491 1.22320 1.01290 0.97775 0.95319 1.23117 1.01460 0.94474 0.97488 1.23170 0.89179 0.94046 0.90356 1.86466 1.37719 1.39767 1.74631 1.22573 0.99690 0.96571 0.93451 0.91844 0.92385 0.93074 0.99252 0.98848 0.93289 0.84555 0.89628 0.87120 0.90073 0.91300 0.88222 0.75514 0.89520 0.89815 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.65 9.16 71.98 0.66 -4.99 16 2 C 0.10 4.15 2.43 44.92 0.11 4.26 16 3 H 0.06 2.53 7.73 -2.39 -0.02 2.51 16 4 C 0.04 1.98 4.65 29.85 0.14 2.12 16 5 C -0.50 -28.81 8.84 25.60 0.23 -28.59 16 6 H 0.06 3.23 7.74 -2.91 -0.02 3.20 16 7 C -0.01 -0.46 5.46 84.66 0.46 0.01 16 8 N -0.94 -58.78 13.29 21.45 0.28 -58.49 16 9 Si 0.96 46.09 29.54 68.60 2.03 48.12 16 10 H -0.28 -13.06 7.11 99.48 0.71 -12.35 16 11 H -0.29 -13.43 7.11 99.48 0.71 -12.73 16 12 H -0.27 -12.27 7.11 99.48 0.71 -11.56 16 13 N -0.65 -24.42 6.21 -470.16 -2.92 -27.34 16 14 C 0.03 0.95 5.97 44.78 0.27 1.21 16 15 H 0.10 2.86 7.77 -2.39 -0.02 2.84 16 16 C -0.14 -3.81 10.46 30.46 0.32 -3.50 16 17 C -0.17 -4.10 2.98 -52.37 -0.16 -4.25 16 18 C -0.13 -2.94 7.43 30.98 0.23 -2.71 16 19 C 0.09 1.73 5.21 31.20 0.16 1.89 16 20 O -0.58 -10.92 13.67 -148.98 -2.04 -12.96 16 21 C -0.09 -1.77 7.93 30.98 0.25 -1.52 16 22 H 0.06 1.81 8.07 -2.39 -0.02 1.79 16 23 H 0.06 1.91 8.14 -2.39 -0.02 1.90 16 24 H 0.05 1.70 8.13 -2.39 -0.02 1.68 16 25 H -0.01 -0.63 8.14 -2.39 -0.02 -0.65 16 26 H -0.01 -0.39 8.14 -2.39 -0.02 -0.40 16 27 H 0.26 15.25 8.31 -92.71 -0.77 14.48 16 28 H 0.33 12.12 7.98 -89.70 -0.72 11.40 16 29 H 0.09 2.65 8.14 -2.39 -0.02 2.63 16 30 H 0.11 2.54 8.14 -2.39 -0.02 2.52 16 31 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 32 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 33 H 0.10 1.55 8.14 -2.39 -0.02 1.53 16 34 H 0.39 3.96 9.12 -74.06 -0.68 3.28 16 35 H 0.09 1.53 8.14 -2.39 -0.02 1.51 16 36 H 0.08 1.84 8.14 -2.38 -0.02 1.82 16 Total: -1.00 -67.46 300.81 -0.31 -67.77 By element: Atomic # 1 Polarization: 19.30 SS G_CDS: -0.33 Total: 18.97 kcal Atomic # 6 Polarization: -38.73 SS G_CDS: 2.66 Total: -36.07 kcal Atomic # 7 Polarization: -83.20 SS G_CDS: -2.63 Total: -85.83 kcal Atomic # 8 Polarization: -10.92 SS G_CDS: -2.04 Total: -12.96 kcal Atomic # 14 Polarization: 46.09 SS G_CDS: 2.03 Total: 48.12 kcal Total: -67.46 -0.31 -67.77 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000724971016.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.537 kcal (2) G-P(sol) polarization free energy of solvation -67.457 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.921 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.314 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.771 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.234 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds