Wall clock time and date at job start Mon Mar 30 2020 02:59:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08999 * 109.47373 * 2 1 4 4 C 1.53008 * 109.46716 * 119.99907 * 2 1 3 5 5 C 1.50698 * 109.47094 * 184.99820 * 4 2 1 6 6 H 1.08004 * 119.99921 * 0.02562 * 5 4 2 7 7 C 1.37867 * 120.00222 * 179.97438 * 5 4 2 8 8 N 1.31521 * 119.99920 * 0.02562 * 7 5 4 9 9 Si 1.86797 * 120.00462 * 180.02562 * 7 5 4 10 10 H 1.48509 * 109.46919 * 0.02562 * 9 7 5 11 11 H 1.48494 * 109.47614 * 120.00095 * 9 7 5 12 12 H 1.48504 * 109.47382 * 240.00279 * 9 7 5 13 13 N 1.46896 * 109.47285 * 239.99658 * 2 1 3 14 14 C 1.46897 * 110.99910 * 85.00256 * 13 2 1 15 15 H 1.09002 * 115.56005 * 350.74020 * 14 13 2 16 16 C 1.53127 * 117.51404 * 136.53827 * 14 13 2 17 17 C 1.52461 * 59.85610 * 107.44937 * 16 14 13 18 18 C 1.53259 * 128.58619 * 242.40062 * 17 16 14 19 19 C 1.53886 * 86.87989 * 194.88878 * 18 17 16 20 20 O 1.42903 * 113.58778 * 139.57555 * 19 18 17 21 21 C 1.53258 * 128.58266 * 117.60050 * 17 16 14 22 22 H 1.09004 * 109.46871 * 60.00043 * 1 2 3 23 23 H 1.08999 * 109.47373 * 180.02562 * 1 2 3 24 24 H 1.09002 * 109.47331 * 300.00718 * 1 2 3 25 25 H 1.09004 * 109.46971 * 304.99964 * 4 2 1 26 26 H 1.08994 * 109.47145 * 64.99822 * 4 2 1 27 27 H 0.97000 * 119.99999 * 179.97438 * 8 7 5 28 28 H 1.00896 * 111.00244 * 208.95953 * 13 2 1 29 29 H 1.09000 * 117.51187 * 0.02562 * 16 14 13 30 30 H 1.08996 * 117.51025 * 214.89800 * 16 14 13 31 31 H 1.08997 * 113.64358 * 80.39295 * 18 17 16 32 32 H 1.08996 * 113.72469 * 309.39858 * 18 17 16 33 33 H 1.08997 * 113.59142 * 270.30614 * 19 18 17 34 34 H 0.96700 * 114.00311 * 179.97438 * 20 19 18 35 35 H 1.08995 * 113.64674 * 50.61579 * 21 17 16 36 36 H 1.08996 * 113.64625 * 279.60935 * 21 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7213 1.2493 5 6 3.5418 -0.6150 1.3129 6 1 4.0789 -0.0856 0.5398 7 6 4.2302 -1.1927 2.3584 8 7 3.5761 -1.8370 3.3002 9 14 6.0918 -1.0604 2.4376 10 1 6.5835 -0.2901 1.2670 11 1 6.4859 -0.3642 3.6886 12 1 6.6860 -2.4213 2.4203 13 7 2.0197 -0.6925 -1.1994 14 6 2.0826 0.2225 -2.3468 15 1 1.6234 1.1994 -2.1950 16 6 3.3260 0.1553 -3.2379 17 6 1.9934 -0.3887 -3.7407 18 6 1.6345 -1.8261 -4.1330 19 6 0.3813 -1.2400 -4.8067 20 8 0.0696 -1.8479 -6.0619 21 6 1.1604 0.0805 -4.9386 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3634 -1.0276 0.0005 24 1 -0.3634 0.5139 0.8899 25 1 1.6052 -0.2617 2.1371 26 1 1.7515 -1.7715 1.2057 27 1 4.0604 -2.2437 4.0356 28 1 2.9173 -1.1206 -1.0286 29 1 4.0970 -0.5682 -2.9728 30 1 3.6852 1.0882 -3.6723 31 1 1.4128 -2.4692 -3.2814 32 1 2.3368 -2.2778 -4.8336 33 1 -0.4808 -1.1749 -4.1429 34 1 -0.7173 -1.4843 -6.4904 35 1 1.7313 0.1607 -5.8635 36 1 0.5586 0.9656 -4.7327 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000724971140.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:59:45 Heat of formation + Delta-G solvation = -14.571759 kcal Electronic energy + Delta-G solvation = -15644.676497 eV Core-core repulsion = 13129.786890 eV Total energy + Delta-G solvation = -2514.889607 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.61708 -36.85626 -35.25378 -32.83239 -31.87657 -28.34849 -27.40714 -25.62982 -23.17558 -22.12130 -21.21401 -19.52503 -18.07170 -17.39744 -16.35844 -15.40541 -15.33089 -14.65646 -14.31662 -14.08697 -13.52892 -12.84280 -12.58985 -12.32222 -12.10116 -11.83516 -11.55388 -11.29390 -11.16312 -10.97071 -10.91745 -10.69041 -10.48206 -10.41087 -9.98188 -9.83546 -9.46253 -9.11907 -9.07702 -8.41687 -7.55404 -6.04736 -4.08056 3.27809 3.36021 3.38845 3.91294 4.37870 4.41724 4.42798 4.75474 4.89545 4.93952 5.20219 5.31984 5.34158 5.51969 5.73974 5.84047 5.86698 5.94309 6.01750 6.14639 6.18335 6.29871 6.34747 6.40522 6.46057 6.53779 6.89724 6.91331 7.51307 7.61817 7.63943 7.94373 8.02517 8.21924 8.34659 8.98428 9.56598 11.06161 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.035265 B = 0.006155 C = 0.005702 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 793.790052 B = 4548.375327 C = 4908.972965 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.089 3.911 3 H 0.032 0.968 4 C 0.019 3.981 5 C -0.524 4.524 6 H 0.053 0.947 7 C 0.061 3.939 8 N -0.891 5.891 9 Si 0.889 3.111 10 H -0.274 1.274 11 H -0.284 1.284 12 H -0.283 1.283 13 N -0.650 5.650 14 C 0.070 3.930 15 H 0.102 0.898 16 C -0.189 4.189 17 C -0.158 4.158 18 C -0.081 4.081 19 C 0.081 3.919 20 O -0.564 6.564 21 C -0.127 4.127 22 H 0.036 0.964 23 H 0.054 0.946 24 H 0.048 0.952 25 H 0.022 0.978 26 H 0.026 0.974 27 H 0.260 0.740 28 H 0.359 0.641 29 H 0.097 0.903 30 H 0.089 0.911 31 H 0.084 0.916 32 H 0.082 0.918 33 H 0.083 0.917 34 H 0.373 0.627 35 H 0.086 0.914 36 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.464 3.746 -14.030 15.515 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.020 4.020 3 H 0.050 0.950 4 C -0.018 4.018 5 C -0.562 4.562 6 H 0.071 0.929 7 C -0.141 4.141 8 N -0.530 5.530 9 Si 0.717 3.283 10 H -0.198 1.198 11 H -0.211 1.211 12 H -0.210 1.210 13 N -0.282 5.282 14 C -0.041 4.041 15 H 0.120 0.880 16 C -0.228 4.228 17 C -0.160 4.160 18 C -0.119 4.119 19 C 0.022 3.978 20 O -0.369 6.369 21 C -0.165 4.165 22 H 0.055 0.945 23 H 0.073 0.927 24 H 0.067 0.933 25 H 0.041 0.959 26 H 0.044 0.956 27 H 0.070 0.930 28 H 0.182 0.818 29 H 0.115 0.885 30 H 0.108 0.892 31 H 0.103 0.897 32 H 0.101 0.899 33 H 0.101 0.899 34 H 0.219 0.781 35 H 0.104 0.896 36 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -5.516 3.029 -13.832 15.196 hybrid contribution 1.406 0.972 0.238 1.726 sum -4.110 4.002 -13.594 14.755 Atomic orbital electron populations 1.21808 0.96660 1.01358 0.99476 1.21667 0.93341 0.95993 0.91009 0.94979 1.19298 0.95510 0.96223 0.90789 1.21212 0.92180 1.34481 1.08371 0.92871 1.24988 0.98262 0.95158 0.95685 1.69973 1.35428 1.35611 1.11947 0.86580 0.85939 0.77794 0.77939 1.19823 1.21055 1.20959 1.60180 1.34212 1.30240 1.03596 1.22322 0.98781 0.95473 0.87569 0.88034 1.23348 0.91588 1.02482 1.05372 1.22152 1.00330 0.97097 0.96423 1.22398 0.95091 0.95118 0.99274 1.23256 0.96601 0.93104 0.84837 1.86528 1.50251 1.64552 1.35586 1.23172 0.98115 0.97873 0.97296 0.94496 0.92663 0.93288 0.95935 0.95572 0.92986 0.81768 0.88467 0.89209 0.89734 0.89923 0.89918 0.78089 0.89577 0.91754 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.39 9.42 37.16 0.35 -2.04 16 2 C 0.09 1.81 2.49 -67.71 -0.17 1.64 16 3 H 0.03 0.67 7.73 -51.93 -0.40 0.27 16 4 C 0.02 0.48 4.57 -27.88 -0.13 0.35 16 5 C -0.52 -14.21 8.12 -34.44 -0.28 -14.49 16 6 H 0.05 1.41 7.49 -52.48 -0.39 1.01 16 7 C 0.06 1.70 5.46 -17.82 -0.10 1.61 16 8 N -0.89 -26.31 13.29 55.43 0.74 -25.57 16 9 Si 0.89 21.30 29.54 -169.99 -5.02 16.28 16 10 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 11 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 12 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 13 N -0.65 -12.27 6.57 -99.96 -0.66 -12.93 16 14 C 0.07 1.13 6.03 -67.92 -0.41 0.72 16 15 H 0.10 1.58 7.77 -51.93 -0.40 1.17 16 16 C -0.19 -2.77 10.23 -26.94 -0.28 -3.04 16 17 C -0.16 -2.24 3.02 -154.79 -0.47 -2.71 16 18 C -0.08 -1.16 7.91 -26.14 -0.21 -1.37 16 19 C 0.08 1.00 5.21 -25.81 -0.13 0.86 16 20 O -0.56 -6.66 13.67 -35.23 -0.48 -7.14 16 21 C -0.13 -1.52 7.93 -26.14 -0.21 -1.72 16 22 H 0.04 0.58 8.07 -51.93 -0.42 0.16 16 23 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 24 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 25 H 0.02 0.60 8.14 -51.93 -0.42 0.18 16 26 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 27 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 28 H 0.36 7.44 7.00 -39.29 -0.28 7.16 16 29 H 0.10 1.48 8.09 -51.93 -0.42 1.06 16 30 H 0.09 1.18 8.14 -51.93 -0.42 0.76 16 31 H 0.08 1.31 8.14 -51.93 -0.42 0.89 16 32 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 33 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 34 H 0.37 2.63 9.12 45.56 0.42 3.04 16 35 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 36 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 LS Contribution 299.76 15.07 4.52 4.52 Total: -1.00 -29.52 299.76 -8.19 -37.71 By element: Atomic # 1 Polarization: 12.58 SS G_CDS: -5.26 Total: 7.33 kcal Atomic # 6 Polarization: -18.17 SS G_CDS: -2.02 Total: -20.19 kcal Atomic # 7 Polarization: -38.58 SS G_CDS: 0.08 Total: -38.50 kcal Atomic # 8 Polarization: -6.66 SS G_CDS: -0.48 Total: -7.14 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.28 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -29.52 -8.19 -37.71 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000724971140.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.135 kcal (2) G-P(sol) polarization free energy of solvation -29.519 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.384 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.188 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.707 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.572 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds