Wall clock time and date at job start Mon Mar 30 2020 02:59:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08999 * 109.47373 * 2 1 4 4 C 1.53008 * 109.46716 * 119.99907 * 2 1 3 5 5 C 1.50698 * 109.47094 * 184.99820 * 4 2 1 6 6 H 1.08004 * 119.99921 * 0.02562 * 5 4 2 7 7 C 1.37867 * 120.00222 * 179.97438 * 5 4 2 8 8 N 1.31521 * 119.99920 * 0.02562 * 7 5 4 9 9 Si 1.86797 * 120.00462 * 180.02562 * 7 5 4 10 10 H 1.48509 * 109.46919 * 0.02562 * 9 7 5 11 11 H 1.48494 * 109.47614 * 120.00095 * 9 7 5 12 12 H 1.48504 * 109.47382 * 240.00279 * 9 7 5 13 13 N 1.46896 * 109.47285 * 239.99658 * 2 1 3 14 14 C 1.46897 * 110.99910 * 85.00256 * 13 2 1 15 15 H 1.09002 * 115.56005 * 350.74020 * 14 13 2 16 16 C 1.53127 * 117.51404 * 136.53827 * 14 13 2 17 17 C 1.52461 * 59.85610 * 107.44937 * 16 14 13 18 18 C 1.53259 * 128.58619 * 242.40062 * 17 16 14 19 19 C 1.53886 * 86.87989 * 194.88878 * 18 17 16 20 20 O 1.42903 * 113.58778 * 139.57555 * 19 18 17 21 21 C 1.53258 * 128.58266 * 117.60050 * 17 16 14 22 22 H 1.09004 * 109.46871 * 60.00043 * 1 2 3 23 23 H 1.08999 * 109.47373 * 180.02562 * 1 2 3 24 24 H 1.09002 * 109.47331 * 300.00718 * 1 2 3 25 25 H 1.09004 * 109.46971 * 304.99964 * 4 2 1 26 26 H 1.08994 * 109.47145 * 64.99822 * 4 2 1 27 27 H 0.97000 * 119.99999 * 179.97438 * 8 7 5 28 28 H 1.00896 * 111.00244 * 208.95953 * 13 2 1 29 29 H 1.09000 * 117.51187 * 0.02562 * 16 14 13 30 30 H 1.08996 * 117.51025 * 214.89800 * 16 14 13 31 31 H 1.08997 * 113.64358 * 80.39295 * 18 17 16 32 32 H 1.08996 * 113.72469 * 309.39858 * 18 17 16 33 33 H 1.08997 * 113.59142 * 270.30614 * 19 18 17 34 34 H 0.96700 * 114.00311 * 179.97438 * 20 19 18 35 35 H 1.08995 * 113.64674 * 50.61579 * 21 17 16 36 36 H 1.08996 * 113.64625 * 279.60935 * 21 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7213 1.2493 5 6 3.5418 -0.6150 1.3129 6 1 4.0789 -0.0856 0.5398 7 6 4.2302 -1.1927 2.3584 8 7 3.5761 -1.8370 3.3002 9 14 6.0918 -1.0604 2.4376 10 1 6.5835 -0.2901 1.2670 11 1 6.4859 -0.3642 3.6886 12 1 6.6860 -2.4213 2.4203 13 7 2.0197 -0.6925 -1.1994 14 6 2.0826 0.2225 -2.3468 15 1 1.6234 1.1994 -2.1950 16 6 3.3260 0.1553 -3.2379 17 6 1.9934 -0.3887 -3.7407 18 6 1.6345 -1.8261 -4.1330 19 6 0.3813 -1.2400 -4.8067 20 8 0.0696 -1.8479 -6.0619 21 6 1.1604 0.0805 -4.9386 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3634 -1.0276 0.0005 24 1 -0.3634 0.5139 0.8899 25 1 1.6052 -0.2617 2.1371 26 1 1.7515 -1.7715 1.2057 27 1 4.0604 -2.2437 4.0356 28 1 2.9173 -1.1206 -1.0286 29 1 4.0970 -0.5682 -2.9728 30 1 3.6852 1.0882 -3.6723 31 1 1.4128 -2.4692 -3.2814 32 1 2.3368 -2.2778 -4.8336 33 1 -0.4808 -1.1749 -4.1429 34 1 -0.7173 -1.4843 -6.4904 35 1 1.7313 0.1607 -5.8635 36 1 0.5586 0.9656 -4.7327 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000724971140.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:59:45 Heat of formation + Delta-G solvation = -35.308954 kcal Electronic energy + Delta-G solvation = -15645.575729 eV Core-core repulsion = 13129.786890 eV Total energy + Delta-G solvation = -2515.788839 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.71794 -38.18457 -36.56669 -34.66354 -33.28120 -29.90282 -29.24216 -26.65446 -25.14332 -23.12557 -22.51067 -21.19096 -19.18680 -18.50639 -18.33677 -16.84304 -16.66669 -16.28876 -15.70677 -15.27023 -14.90201 -14.44316 -13.75874 -13.62059 -13.51498 -13.30440 -13.21548 -12.97757 -12.72578 -12.62472 -12.35675 -12.30060 -12.01205 -11.62881 -11.52622 -11.13377 -11.01035 -10.80500 -10.58551 -10.38288 -8.99630 -8.19921 -6.30235 1.38607 1.39902 1.51508 2.39771 2.75762 3.10986 3.22865 3.45019 3.70288 3.82408 3.85655 4.04192 4.22559 4.36086 4.39900 4.55722 4.65073 4.74483 4.84439 4.86446 4.90392 4.97740 5.07974 5.20106 5.22207 5.34255 5.37283 5.39900 5.49594 5.57296 5.84047 6.20480 6.44626 6.59514 6.85412 6.97035 7.38827 8.91926 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.035265 B = 0.006155 C = 0.005702 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 793.790052 B = 4548.375327 C = 4908.972965 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.098 3.902 3 H 0.030 0.970 4 C 0.026 3.974 5 C -0.532 4.532 6 H 0.058 0.942 7 C 0.004 3.996 8 N -0.931 5.931 9 Si 0.960 3.040 10 H -0.263 1.263 11 H -0.281 1.281 12 H -0.280 1.280 13 N -0.653 5.653 14 C 0.052 3.948 15 H 0.112 0.888 16 C -0.187 4.187 17 C -0.151 4.151 18 C -0.093 4.093 19 C 0.089 3.911 20 O -0.577 6.577 21 C -0.112 4.112 22 H 0.062 0.938 23 H 0.046 0.954 24 H 0.053 0.947 25 H -0.003 1.003 26 H -0.004 1.004 27 H 0.263 0.737 28 H 0.344 0.656 29 H 0.085 0.915 30 H 0.109 0.891 31 H 0.063 0.937 32 H 0.081 0.919 33 H 0.088 0.912 34 H 0.394 0.606 35 H 0.094 0.906 36 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.300 4.960 -15.916 17.493 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.011 4.011 3 H 0.048 0.952 4 C -0.012 4.012 5 C -0.570 4.570 6 H 0.076 0.924 7 C -0.194 4.194 8 N -0.571 5.571 9 Si 0.785 3.215 10 H -0.187 1.187 11 H -0.207 1.207 12 H -0.206 1.206 13 N -0.284 5.284 14 C -0.059 4.059 15 H 0.129 0.871 16 C -0.226 4.226 17 C -0.152 4.152 18 C -0.131 4.131 19 C 0.030 3.970 20 O -0.386 6.386 21 C -0.150 4.150 22 H 0.081 0.919 23 H 0.066 0.934 24 H 0.072 0.928 25 H 0.015 0.985 26 H 0.014 0.986 27 H 0.071 0.929 28 H 0.165 0.835 29 H 0.104 0.896 30 H 0.127 0.873 31 H 0.082 0.918 32 H 0.099 0.901 33 H 0.106 0.894 34 H 0.244 0.756 35 H 0.113 0.887 36 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -5.379 4.263 -15.752 17.182 hybrid contribution 1.320 0.560 0.789 1.637 sum -4.059 4.824 -14.963 16.236 Atomic orbital electron populations 1.21712 0.94402 1.01346 1.00981 1.21462 0.95096 0.94950 0.89593 0.95212 1.19156 0.94909 0.94721 0.92372 1.21548 0.93245 1.33954 1.08251 0.92382 1.25880 1.03268 0.94849 0.95378 1.70103 1.37454 1.36791 1.12752 0.85475 0.79922 0.77876 0.78209 1.18692 1.20656 1.20627 1.60215 1.33338 1.31044 1.03797 1.22391 1.00675 0.95627 0.87197 0.87065 1.23380 0.91276 1.03139 1.04759 1.22190 0.99884 0.97288 0.95858 1.22459 0.96655 0.95019 0.98960 1.23110 0.95940 0.92795 0.85149 1.86475 1.51800 1.64996 1.35297 1.23126 0.97470 0.98181 0.96216 0.91893 0.93434 0.92819 0.98496 0.98559 0.92861 0.83455 0.89606 0.87268 0.91786 0.90060 0.89428 0.75558 0.88743 0.90039 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.36 9.42 71.98 0.68 -3.68 16 2 C 0.10 4.01 2.49 44.92 0.11 4.12 16 3 H 0.03 1.22 7.73 -2.39 -0.02 1.20 16 4 C 0.03 1.34 4.57 29.85 0.14 1.48 16 5 C -0.53 -29.27 8.12 25.60 0.21 -29.07 16 6 H 0.06 3.08 7.49 -2.91 -0.02 3.05 16 7 C 0.00 0.25 5.46 84.65 0.46 0.71 16 8 N -0.93 -56.21 13.29 21.44 0.28 -55.92 16 9 Si 0.96 43.93 29.54 68.60 2.03 45.95 16 10 H -0.26 -11.47 7.11 99.48 0.71 -10.76 16 11 H -0.28 -12.61 7.11 99.48 0.71 -11.91 16 12 H -0.28 -12.62 7.11 99.48 0.71 -11.92 16 13 N -0.65 -24.59 6.57 -470.16 -3.09 -27.68 16 14 C 0.05 1.59 6.03 44.78 0.27 1.86 16 15 H 0.11 3.17 7.77 -2.39 -0.02 3.15 16 16 C -0.19 -5.15 10.23 30.46 0.31 -4.84 16 17 C -0.15 -3.96 3.02 -52.37 -0.16 -4.12 16 18 C -0.09 -2.56 7.91 30.98 0.25 -2.32 16 19 C 0.09 1.98 5.21 31.19 0.16 2.15 16 20 O -0.58 -12.11 13.67 -148.98 -2.04 -14.14 16 21 C -0.11 -2.31 7.93 30.98 0.25 -2.07 16 22 H 0.06 1.84 8.07 -2.38 -0.02 1.82 16 23 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 24 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 25 H 0.00 -0.19 8.14 -2.38 -0.02 -0.20 16 26 H 0.00 -0.23 8.14 -2.39 -0.02 -0.25 16 27 H 0.26 14.92 8.31 -92.71 -0.77 14.15 16 28 H 0.34 14.51 7.00 -89.70 -0.63 13.88 16 29 H 0.09 2.56 8.09 -2.39 -0.02 2.54 16 30 H 0.11 2.57 8.14 -2.39 -0.02 2.55 16 31 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16 32 H 0.08 2.23 8.14 -2.39 -0.02 2.21 16 33 H 0.09 1.88 8.14 -2.39 -0.02 1.86 16 34 H 0.39 4.34 9.12 -74.06 -0.68 3.66 16 35 H 0.09 1.84 8.14 -2.39 -0.02 1.82 16 36 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 Total: -1.00 -63.47 299.76 -0.39 -63.86 By element: Atomic # 1 Polarization: 23.96 SS G_CDS: -0.24 Total: 23.71 kcal Atomic # 6 Polarization: -38.45 SS G_CDS: 2.67 Total: -35.78 kcal Atomic # 7 Polarization: -80.80 SS G_CDS: -2.80 Total: -83.60 kcal Atomic # 8 Polarization: -12.11 SS G_CDS: -2.04 Total: -14.14 kcal Atomic # 14 Polarization: 43.93 SS G_CDS: 2.03 Total: 45.95 kcal Total: -63.47 -0.39 -63.86 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000724971140.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.550 kcal (2) G-P(sol) polarization free energy of solvation -63.473 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.923 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.386 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.859 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.309 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds