Wall clock time and date at job start Mon Mar 30 2020 03:14:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 O 1.20766 * 120.00122 * 2 1 4 4 C 1.50698 * 120.00423 * 180.02562 * 2 1 3 5 5 C 1.52996 * 109.47620 * 179.97438 * 4 2 1 6 6 N 1.46501 * 109.47218 * 179.97438 * 5 4 2 7 7 C 1.36933 * 120.00368 * 270.00472 * 6 5 4 8 8 H 1.07993 * 120.00361 * 141.60138 * 7 6 5 9 9 C 1.38820 * 119.99813 * 321.59815 * 7 6 5 10 10 N 1.31619 * 120.00002 * 339.26893 * 9 7 6 11 11 Si 1.86799 * 119.99687 * 159.27053 * 9 7 6 12 12 H 1.48502 * 109.47127 * 90.00119 * 11 9 7 13 13 H 1.48500 * 109.46911 * 210.00018 * 11 9 7 14 14 H 1.48504 * 109.47183 * 329.99758 * 11 9 7 15 15 C 1.46508 * 119.99372 * 90.00400 * 6 5 4 16 16 C 1.54261 * 110.02900 * 242.54441 * 15 6 5 17 17 C 1.54965 * 104.16140 * 217.14127 * 16 15 6 18 18 C 1.54889 * 102.77903 * 37.89091 * 17 16 15 19 19 C 1.53879 * 110.02751 * 125.33131 * 15 6 5 20 20 H 1.09001 * 109.47341 * 179.97438 * 1 2 3 21 21 H 1.08999 * 109.47532 * 299.99891 * 1 2 3 22 22 H 1.09000 * 109.46891 * 60.00126 * 1 2 3 23 23 H 1.09004 * 109.46848 * 60.00282 * 4 2 1 24 24 H 1.09002 * 109.47195 * 300.00687 * 4 2 1 25 25 H 1.09004 * 109.46637 * 60.00328 * 5 4 2 26 26 H 1.08996 * 109.47700 * 300.00246 * 5 4 2 27 27 H 0.96993 * 119.99978 * 175.03962 * 10 9 7 28 28 H 1.08996 * 110.01963 * 3.94427 * 15 6 5 29 29 H 1.09004 * 110.49314 * 335.78948 * 16 15 6 30 30 H 1.09001 * 110.48386 * 98.43429 * 16 15 6 31 31 H 1.09007 * 110.71851 * 279.57651 * 17 16 15 32 32 H 1.09001 * 110.92720 * 156.30048 * 17 16 15 33 33 H 1.09003 * 110.48793 * 203.41210 * 18 17 16 34 34 H 1.08996 * 110.59708 * 80.81493 * 18 17 16 35 35 H 1.08998 * 110.03033 * 238.56378 * 19 15 6 36 36 H 1.08997 * 110.03710 * 0.02562 * 19 15 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.1108 1.0459 0.0000 4 6 2.2605 -1.3050 -0.0006 5 6 3.7647 -1.0255 -0.0011 6 7 4.4972 -2.2942 -0.0011 7 6 4.8399 -2.8870 1.1848 8 1 4.7892 -3.9610 1.2862 9 6 5.2525 -2.1074 2.2568 10 7 5.7053 -0.8892 2.0487 11 14 5.1650 -2.7874 3.9944 12 1 6.4408 -3.4729 4.3225 13 1 4.9412 -1.6738 4.9510 14 1 4.0434 -3.7559 4.0911 15 6 4.8631 -2.9287 -1.2699 16 6 4.1708 -4.3017 -1.3930 17 6 5.2259 -5.1972 -2.0902 18 6 6.5548 -4.7200 -1.4535 19 6 6.3783 -3.1942 -1.3087 20 1 -0.3634 -1.0277 -0.0005 21 1 -0.3634 0.5138 0.8900 22 1 -0.3633 0.5138 -0.8900 23 1 1.9972 -1.8762 -0.8909 24 1 1.9971 -1.8771 0.8891 25 1 4.0283 -0.4541 0.8890 26 1 4.0278 -0.4537 -0.8910 27 1 5.9257 -0.3186 2.8015 28 1 4.5748 -2.2889 -2.1039 29 1 3.9277 -4.6964 -0.4064 30 1 3.2723 -4.2223 -2.0051 31 1 5.2288 -5.0234 -3.1663 32 1 5.0488 -6.2502 -1.8710 33 1 7.3952 -4.9462 -2.1099 34 1 6.6996 -5.1817 -0.4769 35 1 6.8251 -2.6840 -2.1620 36 1 6.8414 -2.8515 -0.3834 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000772779315.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:14:07 Heat of formation + Delta-G solvation = -36.860587 kcal Electronic energy + Delta-G solvation = -16235.093595 eV Core-core repulsion = 13719.237472 eV Total energy + Delta-G solvation = -2515.856123 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -38.85466 -37.61940 -34.41762 -31.56623 -30.52799 -28.83196 -27.79509 -26.38645 -24.18892 -21.32397 -19.95650 -18.99507 -18.82539 -16.31505 -15.45052 -15.03188 -14.84024 -14.62143 -14.34544 -14.11160 -13.12735 -12.94984 -12.55199 -12.37996 -12.01222 -11.70236 -11.49896 -11.05853 -10.92349 -10.65054 -10.51264 -10.39773 -10.27032 -10.17079 -10.10045 -9.67354 -9.57838 -9.46159 -9.00013 -8.39439 -6.51313 -5.69020 -3.34587 2.53667 3.37304 3.45999 3.47303 4.48182 4.66406 5.31793 5.35400 5.43949 5.46842 5.54811 5.57126 5.75662 5.86198 6.08900 6.15954 6.20119 6.26963 6.31249 6.38569 6.46490 6.58340 6.62429 6.66946 6.78800 6.89069 7.05995 7.11677 7.22676 7.45548 7.80825 7.89857 8.10453 8.58977 9.25583 9.88193 10.47194 11.26147 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.016901 B = 0.012041 C = 0.008153 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1656.334779 B = 2324.790776 C = 3433.522850 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.352 3.648 3 O -0.464 6.464 4 C -0.188 4.188 5 C 0.156 3.844 6 N -0.578 5.578 7 C -0.252 4.252 8 H 0.060 0.940 9 C 0.012 3.988 10 N -0.881 5.881 11 Si 0.888 3.112 12 H -0.286 1.286 13 H -0.290 1.290 14 H -0.279 1.279 15 C 0.169 3.831 16 C -0.135 4.135 17 C -0.123 4.123 18 C -0.118 4.118 19 C -0.131 4.131 20 H 0.077 0.923 21 H 0.083 0.917 22 H 0.082 0.918 23 H 0.078 0.922 24 H 0.094 0.906 25 H 0.098 0.902 26 H 0.026 0.974 27 H 0.253 0.747 28 H 0.046 0.954 29 H 0.073 0.927 30 H 0.045 0.955 31 H 0.054 0.946 32 H 0.051 0.949 33 H 0.046 0.954 34 H 0.061 0.939 35 H 0.039 0.961 36 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.442 -4.070 -5.808 9.582 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.263 4.263 2 C 0.228 3.772 3 O -0.338 6.338 4 C -0.228 4.228 5 C 0.029 3.971 6 N -0.297 5.297 7 C -0.382 4.382 8 H 0.078 0.922 9 C -0.188 4.188 10 N -0.522 5.522 11 Si 0.717 3.283 12 H -0.213 1.213 13 H -0.216 1.216 14 H -0.204 1.204 15 C 0.061 3.939 16 C -0.175 4.175 17 C -0.161 4.161 18 C -0.155 4.155 19 C -0.171 4.171 20 H 0.096 0.904 21 H 0.102 0.898 22 H 0.101 0.899 23 H 0.096 0.904 24 H 0.112 0.888 25 H 0.115 0.885 26 H 0.045 0.955 27 H 0.064 0.936 28 H 0.064 0.936 29 H 0.092 0.908 30 H 0.064 0.936 31 H 0.072 0.928 32 H 0.070 0.930 33 H 0.065 0.935 34 H 0.080 0.920 35 H 0.058 0.942 36 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -5.970 -3.386 -5.692 8.917 hybrid contribution -0.214 -0.421 0.960 1.070 sum -6.184 -3.807 -4.733 8.668 Atomic orbital electron populations 1.22314 0.96185 1.03965 1.03793 1.24888 0.91164 0.91341 0.69853 1.90378 1.71994 1.35512 1.35911 1.22841 1.01514 0.95307 1.03132 1.20728 0.85493 0.88482 1.02404 1.43965 1.61610 1.23557 1.00586 1.18870 1.38727 0.91715 0.88840 0.92198 1.25192 0.97470 0.97127 0.99060 1.70072 1.43111 1.08987 1.30070 0.86559 0.78042 0.78211 0.85481 1.21306 1.21625 1.20402 1.21066 0.91949 0.92073 0.88773 1.22866 0.96717 0.97669 1.00206 1.22439 0.96459 0.98403 0.98777 1.22256 0.96061 0.97464 0.99758 1.22545 0.98691 0.94068 1.01748 0.90411 0.89786 0.89915 0.90386 0.88814 0.88453 0.95522 0.93650 0.93611 0.90820 0.93631 0.92755 0.92988 0.93497 0.92014 0.94183 0.89592 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -2.54 10.33 36.00 0.37 -2.17 16 2 C 0.35 6.19 7.27 -29.04 -0.21 5.98 16 3 O -0.46 -10.00 16.72 5.99 0.10 -9.90 16 4 C -0.19 -3.55 5.87 -27.89 -0.16 -3.71 16 5 C 0.16 3.68 4.57 -4.04 -0.02 3.66 16 6 N -0.58 -13.85 2.38 -164.39 -0.39 -14.25 16 7 C -0.25 -6.55 7.75 -15.06 -0.12 -6.67 16 8 H 0.06 1.57 6.94 -52.49 -0.36 1.20 16 9 C 0.01 0.33 4.96 -17.43 -0.09 0.24 16 10 N -0.88 -25.42 11.48 55.49 0.64 -24.78 16 11 Si 0.89 21.27 29.61 -169.99 -5.03 16.24 16 12 H -0.29 -6.90 7.11 56.52 0.40 -6.49 16 13 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 14 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 15 C 0.17 3.50 3.42 -66.81 -0.23 3.28 16 16 C -0.14 -2.44 6.43 -25.03 -0.16 -2.60 16 17 C -0.12 -1.95 6.91 -24.70 -0.17 -2.12 16 18 C -0.12 -2.04 6.83 -25.07 -0.17 -2.22 16 19 C -0.13 -2.68 6.25 -25.61 -0.16 -2.84 16 20 H 0.08 0.81 8.00 -51.93 -0.42 0.39 16 21 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 22 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 23 H 0.08 1.32 8.14 -51.93 -0.42 0.90 16 24 H 0.09 1.80 8.14 -51.93 -0.42 1.38 16 25 H 0.10 2.68 5.51 -51.93 -0.29 2.40 16 26 H 0.03 0.64 7.86 -51.93 -0.41 0.23 16 27 H 0.25 7.15 8.32 -40.82 -0.34 6.81 16 28 H 0.05 0.92 7.81 -51.93 -0.41 0.52 16 29 H 0.07 1.47 6.64 -51.93 -0.34 1.12 16 30 H 0.04 0.75 8.14 -51.93 -0.42 0.32 16 31 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 32 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 33 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 34 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 35 H 0.04 0.76 8.14 -51.93 -0.42 0.33 16 36 H 0.09 2.09 7.16 -51.93 -0.37 1.72 16 LS Contribution 291.77 15.07 4.40 4.40 Total: -1.00 -29.30 291.77 -7.36 -36.67 By element: Atomic # 1 Polarization: 6.75 SS G_CDS: -5.96 Total: 0.79 kcal Atomic # 6 Polarization: -8.05 SS G_CDS: -1.12 Total: -9.17 kcal Atomic # 7 Polarization: -39.27 SS G_CDS: 0.25 Total: -39.03 kcal Atomic # 8 Polarization: -10.00 SS G_CDS: 0.10 Total: -9.90 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.03 Total: 16.24 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -29.30 -7.36 -36.67 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000772779315.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.191 kcal (2) G-P(sol) polarization free energy of solvation -29.305 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.496 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.364 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.669 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.861 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds