Wall clock time and date at job start Mon Mar 30 2020 03:14:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 O 1.20766 * 120.00122 * 2 1 4 4 C 1.50698 * 120.00423 * 180.02562 * 2 1 3 5 5 C 1.52996 * 109.47620 * 179.97438 * 4 2 1 6 6 N 1.46501 * 109.47218 * 179.97438 * 5 4 2 7 7 C 1.36933 * 120.00368 * 270.00472 * 6 5 4 8 8 H 1.07993 * 120.00361 * 141.60138 * 7 6 5 9 9 C 1.38820 * 119.99813 * 321.59815 * 7 6 5 10 10 N 1.31619 * 120.00002 * 339.26893 * 9 7 6 11 11 Si 1.86799 * 119.99687 * 159.27053 * 9 7 6 12 12 H 1.48502 * 109.47127 * 90.00119 * 11 9 7 13 13 H 1.48500 * 109.46911 * 210.00018 * 11 9 7 14 14 H 1.48504 * 109.47183 * 329.99758 * 11 9 7 15 15 C 1.46508 * 119.99372 * 90.00400 * 6 5 4 16 16 C 1.54261 * 110.02900 * 242.54441 * 15 6 5 17 17 C 1.54965 * 104.16140 * 217.14127 * 16 15 6 18 18 C 1.54889 * 102.77903 * 37.89091 * 17 16 15 19 19 C 1.53879 * 110.02751 * 125.33131 * 15 6 5 20 20 H 1.09001 * 109.47341 * 179.97438 * 1 2 3 21 21 H 1.08999 * 109.47532 * 299.99891 * 1 2 3 22 22 H 1.09000 * 109.46891 * 60.00126 * 1 2 3 23 23 H 1.09004 * 109.46848 * 60.00282 * 4 2 1 24 24 H 1.09002 * 109.47195 * 300.00687 * 4 2 1 25 25 H 1.09004 * 109.46637 * 60.00328 * 5 4 2 26 26 H 1.08996 * 109.47700 * 300.00246 * 5 4 2 27 27 H 0.96993 * 119.99978 * 175.03962 * 10 9 7 28 28 H 1.08996 * 110.01963 * 3.94427 * 15 6 5 29 29 H 1.09004 * 110.49314 * 335.78948 * 16 15 6 30 30 H 1.09001 * 110.48386 * 98.43429 * 16 15 6 31 31 H 1.09007 * 110.71851 * 279.57651 * 17 16 15 32 32 H 1.09001 * 110.92720 * 156.30048 * 17 16 15 33 33 H 1.09003 * 110.48793 * 203.41210 * 18 17 16 34 34 H 1.08996 * 110.59708 * 80.81493 * 18 17 16 35 35 H 1.08998 * 110.03033 * 238.56378 * 19 15 6 36 36 H 1.08997 * 110.03710 * 0.02562 * 19 15 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.1108 1.0459 0.0000 4 6 2.2605 -1.3050 -0.0006 5 6 3.7647 -1.0255 -0.0011 6 7 4.4972 -2.2942 -0.0011 7 6 4.8399 -2.8870 1.1848 8 1 4.7892 -3.9610 1.2862 9 6 5.2525 -2.1074 2.2568 10 7 5.7053 -0.8892 2.0487 11 14 5.1650 -2.7874 3.9944 12 1 6.4408 -3.4729 4.3225 13 1 4.9412 -1.6738 4.9510 14 1 4.0434 -3.7559 4.0911 15 6 4.8631 -2.9287 -1.2699 16 6 4.1708 -4.3017 -1.3930 17 6 5.2259 -5.1972 -2.0902 18 6 6.5548 -4.7200 -1.4535 19 6 6.3783 -3.1942 -1.3087 20 1 -0.3634 -1.0277 -0.0005 21 1 -0.3634 0.5138 0.8900 22 1 -0.3633 0.5138 -0.8900 23 1 1.9972 -1.8762 -0.8909 24 1 1.9971 -1.8771 0.8891 25 1 4.0283 -0.4541 0.8890 26 1 4.0278 -0.4537 -0.8910 27 1 5.9257 -0.3186 2.8015 28 1 4.5748 -2.2889 -2.1039 29 1 3.9277 -4.6964 -0.4064 30 1 3.2723 -4.2223 -2.0051 31 1 5.2288 -5.0234 -3.1663 32 1 5.0488 -6.2502 -1.8710 33 1 7.3952 -4.9462 -2.1099 34 1 6.6996 -5.1817 -0.4769 35 1 6.8251 -2.6840 -2.1620 36 1 6.8414 -2.8515 -0.3834 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000772779315.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:14:06 Heat of formation + Delta-G solvation = -53.401980 kcal Electronic energy + Delta-G solvation = -16235.810884 eV Core-core repulsion = 13719.237472 eV Total energy + Delta-G solvation = -2516.573412 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.37950 -39.22763 -36.17201 -33.44659 -32.07559 -30.20547 -29.29512 -28.12484 -25.98582 -23.09749 -21.35184 -20.73340 -20.28702 -18.18746 -17.12794 -16.74512 -16.36035 -16.14062 -15.86730 -15.74696 -14.70574 -14.67380 -14.06590 -13.90482 -13.33700 -13.11808 -12.95559 -12.86070 -12.73167 -12.44765 -12.19816 -12.04026 -11.81985 -11.74418 -11.69015 -11.41744 -11.22683 -11.15016 -10.51267 -10.39797 -8.50312 -7.71446 -5.41628 1.14019 1.44569 1.47538 1.56057 2.53378 3.20414 3.35130 3.80183 4.01774 4.06599 4.28079 4.33152 4.44659 4.55204 4.69154 4.71968 4.79468 4.85268 4.95333 4.99264 4.99337 5.01329 5.20164 5.25941 5.28430 5.35588 5.39497 5.60283 5.64929 5.70242 5.77223 5.91014 6.52938 6.72642 7.23463 7.94158 8.47366 9.19013 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.016901 B = 0.012041 C = 0.008153 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1656.334779 B = 2324.790776 C = 3433.522850 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.353 3.647 3 O -0.513 6.513 4 C -0.179 4.179 5 C 0.157 3.843 6 N -0.591 5.591 7 C -0.238 4.238 8 H 0.061 0.939 9 C -0.043 4.043 10 N -0.920 5.920 11 Si 0.946 3.054 12 H -0.288 1.288 13 H -0.299 1.299 14 H -0.264 1.264 15 C 0.158 3.842 16 C -0.126 4.126 17 C -0.111 4.111 18 C -0.113 4.113 19 C -0.132 4.132 20 H 0.104 0.896 21 H 0.095 0.905 22 H 0.103 0.897 23 H 0.105 0.895 24 H 0.093 0.907 25 H 0.055 0.945 26 H 0.010 0.990 27 H 0.245 0.755 28 H 0.050 0.950 29 H 0.053 0.947 30 H 0.068 0.932 31 H 0.077 0.923 32 H 0.072 0.928 33 H 0.071 0.929 34 H 0.046 0.954 35 H 0.049 0.951 36 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.370 -6.149 -7.058 12.557 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.248 4.248 2 C 0.232 3.768 3 O -0.391 6.391 4 C -0.218 4.218 5 C 0.031 3.969 6 N -0.311 5.311 7 C -0.368 4.368 8 H 0.078 0.922 9 C -0.239 4.239 10 N -0.565 5.565 11 Si 0.775 3.225 12 H -0.214 1.214 13 H -0.225 1.225 14 H -0.189 1.189 15 C 0.052 3.948 16 C -0.165 4.165 17 C -0.149 4.149 18 C -0.151 4.151 19 C -0.171 4.171 20 H 0.123 0.877 21 H 0.113 0.887 22 H 0.122 0.878 23 H 0.123 0.877 24 H 0.111 0.889 25 H 0.073 0.927 26 H 0.028 0.972 27 H 0.054 0.946 28 H 0.068 0.932 29 H 0.072 0.928 30 H 0.086 0.914 31 H 0.095 0.905 32 H 0.091 0.909 33 H 0.089 0.911 34 H 0.065 0.935 35 H 0.068 0.932 36 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -7.926 -5.508 -6.960 11.900 hybrid contribution 0.428 0.226 1.257 1.347 sum -7.497 -5.282 -5.704 10.800 Atomic orbital electron populations 1.22245 0.91024 1.06317 1.05224 1.25394 0.93822 0.89683 0.67855 1.90380 1.73570 1.36764 1.38424 1.22647 0.98051 0.96786 1.04321 1.20518 0.88899 0.87976 0.99552 1.44161 1.62263 1.23411 1.01274 1.19045 1.36535 0.91657 0.89598 0.92172 1.25870 0.98204 0.97481 1.02394 1.70235 1.45514 1.10413 1.30306 0.85624 0.78169 0.77382 0.81369 1.21447 1.22529 1.18891 1.21334 0.92477 0.93625 0.87398 1.22727 0.98071 0.95790 0.99960 1.22410 0.93880 0.98963 0.99646 1.22219 0.98355 0.94636 0.99898 1.22482 0.98272 0.96750 0.99589 0.87690 0.88653 0.87847 0.87683 0.88889 0.92682 0.97153 0.94590 0.93176 0.92812 0.91353 0.90451 0.90887 0.91065 0.93478 0.93201 0.94513 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -4.09 10.33 71.23 0.74 -3.35 16 2 C 0.35 12.08 7.27 29.10 0.21 12.29 16 3 O -0.51 -22.56 16.72 -1.47 -0.02 -22.58 16 4 C -0.18 -6.59 5.87 29.85 0.18 -6.41 16 5 C 0.16 7.65 4.57 86.38 0.39 8.04 16 6 N -0.59 -28.76 2.38 -674.01 -1.60 -30.36 16 7 C -0.24 -12.58 7.75 84.04 0.65 -11.93 16 8 H 0.06 3.15 6.94 -2.91 -0.02 3.13 16 9 C -0.04 -2.39 4.96 84.86 0.42 -1.97 16 10 N -0.92 -55.80 11.48 21.65 0.25 -55.55 16 11 Si 0.95 44.75 29.61 68.60 2.03 46.78 16 12 H -0.29 -13.53 7.11 99.48 0.71 -12.83 16 13 H -0.30 -14.41 7.11 99.48 0.71 -13.70 16 14 H -0.26 -11.75 7.11 99.48 0.71 -11.04 16 15 C 0.16 6.46 3.42 45.71 0.16 6.61 16 16 C -0.13 -4.22 6.43 31.69 0.20 -4.02 16 17 C -0.11 -3.10 6.91 31.91 0.22 -2.88 16 18 C -0.11 -3.72 6.83 31.67 0.22 -3.50 16 19 C -0.13 -5.36 6.25 31.32 0.20 -5.17 16 20 H 0.10 1.70 8.00 -2.39 -0.02 1.68 16 21 H 0.09 1.91 8.14 -2.39 -0.02 1.90 16 22 H 0.10 1.87 8.14 -2.39 -0.02 1.85 16 23 H 0.11 3.30 8.14 -2.38 -0.02 3.28 16 24 H 0.09 3.47 8.14 -2.39 -0.02 3.46 16 25 H 0.06 3.20 5.51 -2.38 -0.01 3.19 16 26 H 0.01 0.51 7.86 -2.39 -0.02 0.49 16 27 H 0.24 14.59 8.32 -92.71 -0.77 13.82 16 28 H 0.05 1.98 7.81 -2.39 -0.02 1.96 16 29 H 0.05 2.02 6.64 -2.38 -0.02 2.01 16 30 H 0.07 1.98 8.14 -2.39 -0.02 1.96 16 31 H 0.08 1.85 8.14 -2.38 -0.02 1.83 16 32 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 33 H 0.07 1.99 8.14 -2.39 -0.02 1.97 16 34 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 35 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 36 H 0.04 1.84 7.16 -2.39 -0.02 1.83 16 Total: -1.00 -67.22 291.77 5.27 -61.96 By element: Atomic # 1 Polarization: 11.02 SS G_CDS: 1.03 Total: 12.05 kcal Atomic # 6 Polarization: -15.87 SS G_CDS: 3.58 Total: -12.29 kcal Atomic # 7 Polarization: -84.56 SS G_CDS: -1.36 Total: -85.91 kcal Atomic # 8 Polarization: -22.56 SS G_CDS: -0.02 Total: -22.58 kcal Atomic # 14 Polarization: 44.75 SS G_CDS: 2.03 Total: 46.78 kcal Total: -67.22 5.27 -61.96 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000772779315.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.555 kcal (2) G-P(sol) polarization free energy of solvation -67.223 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.668 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.266 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.957 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.402 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds