Wall clock time and date at job start Mon Mar 30 2020 03:14:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 O 1.20756 * 120.00082 * 2 1 4 4 C 1.50700 * 119.99677 * 179.97438 * 2 1 3 5 5 C 1.53000 * 109.47119 * 179.97438 * 4 2 1 6 6 N 1.46898 * 109.47348 * 180.02562 * 5 4 2 7 7 C 1.46894 * 111.00052 * 190.00416 * 6 5 4 8 8 C 1.50709 * 109.47267 * 71.30537 * 7 6 5 9 9 H 1.07997 * 119.99465 * 355.27019 * 8 7 6 10 10 C 1.37870 * 120.00000 * 175.27117 * 8 7 6 11 11 N 1.31514 * 120.00154 * 359.97438 * 10 8 7 12 12 Si 1.86804 * 120.00101 * 179.97438 * 10 8 7 13 13 H 1.48501 * 109.46963 * 60.00092 * 12 10 8 14 14 H 1.48500 * 109.46978 * 180.02562 * 12 10 8 15 15 H 1.48497 * 109.47006 * 300.00241 * 12 10 8 16 16 C 1.46900 * 110.99934 * 66.05107 * 6 5 4 17 17 C 1.52996 * 109.47112 * 191.46009 * 16 6 5 18 18 C 1.53003 * 117.49547 * 243.12967 * 17 16 6 19 19 C 1.53000 * 60.00112 * 252.51090 * 18 17 16 20 20 H 1.09003 * 109.47225 * 180.02562 * 1 2 3 21 21 H 1.09002 * 109.47149 * 300.00392 * 1 2 3 22 22 H 1.09000 * 109.47239 * 60.00029 * 1 2 3 23 23 H 1.09009 * 109.47052 * 60.00148 * 4 2 1 24 24 H 1.08995 * 109.47628 * 300.00546 * 4 2 1 25 25 H 1.09009 * 109.46822 * 60.00271 * 5 4 2 26 26 H 1.08995 * 109.47532 * 300.00869 * 5 4 2 27 27 H 1.09002 * 109.46991 * 191.30304 * 7 6 5 28 28 H 1.09001 * 109.47459 * 311.30161 * 7 6 5 29 29 H 0.97002 * 120.00323 * 179.97438 * 11 10 8 30 30 H 1.09005 * 109.46774 * 311.45553 * 16 6 5 31 31 H 1.09000 * 109.47139 * 71.45513 * 16 6 5 32 32 H 1.08995 * 115.55278 * 28.83511 * 17 16 6 33 33 H 1.08995 * 117.50195 * 359.97438 * 18 17 16 34 34 H 1.09004 * 117.49922 * 145.02395 * 18 17 16 35 35 H 1.09004 * 117.50117 * 252.51409 * 19 18 17 36 36 H 1.09002 * 117.50445 * 107.48868 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1108 1.0458 0.0000 4 6 2.2604 -1.3051 0.0006 5 6 3.7647 -1.0257 -0.0002 6 7 4.4992 -2.2978 -0.0002 7 6 5.9321 -2.0785 0.2373 8 6 6.1469 -1.6714 1.6724 9 1 5.2984 -1.5102 2.3206 10 6 7.4267 -1.5050 2.1575 11 7 8.4600 -1.7018 1.3681 12 14 7.6930 -0.9998 3.9361 13 1 7.0986 -2.0214 4.8351 14 1 9.1489 -0.8887 4.2064 15 1 7.0431 0.3129 4.1804 16 6 4.2797 -3.0324 -1.2533 17 6 4.8149 -4.4584 -1.1090 18 6 5.9704 -4.8749 -2.0213 19 6 4.5648 -5.4273 -2.2665 20 1 -0.3634 -1.0277 0.0005 21 1 -0.3633 0.5139 0.8900 22 1 -0.3634 0.5138 -0.8900 23 1 1.9971 -1.8771 -0.8892 24 1 1.9971 -1.8764 0.8907 25 1 4.0284 -0.4535 0.8894 26 1 4.0277 -0.4546 -0.8905 27 1 6.4791 -2.9994 0.0351 28 1 6.2931 -1.2892 -0.4222 29 1 9.3604 -1.5844 1.7093 30 1 3.2125 -3.0653 -1.4730 31 1 4.8025 -2.5285 -2.0662 32 1 4.7988 -4.8666 -0.0986 33 1 6.3490 -4.1331 -2.7246 34 1 6.7149 -5.5573 -1.6110 35 1 4.3845 -6.4730 -2.0174 36 1 4.0189 -5.0488 -3.1307 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000772802633.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:14:05 Heat of formation + Delta-G solvation = -18.408299 kcal Electronic energy + Delta-G solvation = -15605.821589 eV Core-core repulsion = 13090.765617 eV Total energy + Delta-G solvation = -2515.055972 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.30027 -37.74042 -35.49007 -32.63848 -31.31965 -29.31188 -27.61396 -25.11931 -22.87218 -21.93447 -20.76231 -19.57834 -19.17882 -16.42737 -15.79483 -15.48557 -15.24224 -14.74802 -14.44580 -14.17625 -13.64260 -13.30650 -12.88314 -12.51688 -12.22330 -12.02189 -11.89918 -11.46000 -11.18872 -11.03468 -10.80852 -10.66401 -10.50607 -10.45344 -9.93439 -9.85494 -9.38404 -9.29038 -9.11200 -8.36111 -7.24239 -5.96405 -3.97091 2.16560 3.37753 3.41116 3.44410 4.14248 4.26456 4.48455 4.89256 5.09951 5.25664 5.27624 5.33664 5.38814 5.39642 5.52577 5.56714 5.74109 5.89358 5.92000 6.01312 6.03277 6.14121 6.23903 6.30086 6.46470 6.53359 6.74152 6.82752 7.35786 7.41981 7.72050 7.85738 8.16688 8.25415 8.60150 9.09573 9.66320 11.14341 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.014697 B = 0.009771 C = 0.006225 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1904.708398 B = 2864.871221 C = 4496.958265 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.352 3.648 3 O -0.459 6.459 4 C -0.170 4.170 5 C 0.072 3.928 6 N -0.535 5.535 7 C 0.193 3.807 8 C -0.505 4.505 9 H 0.061 0.939 10 C 0.055 3.945 11 N -0.899 5.899 12 Si 0.895 3.105 13 H -0.277 1.277 14 H -0.288 1.288 15 H -0.277 1.277 16 C 0.082 3.918 17 C -0.129 4.129 18 C -0.179 4.179 19 C -0.190 4.190 20 H 0.080 0.920 21 H 0.088 0.912 22 H 0.086 0.914 23 H 0.091 0.909 24 H 0.105 0.895 25 H 0.088 0.912 26 H 0.023 0.977 27 H 0.042 0.958 28 H -0.014 1.014 29 H 0.261 0.739 30 H 0.063 0.937 31 H 0.022 0.978 32 H 0.112 0.888 33 H 0.089 0.911 34 H 0.090 0.910 35 H 0.088 0.912 36 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.012 -3.387 -5.423 14.498 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.260 4.260 2 C 0.227 3.773 3 O -0.333 6.333 4 C -0.208 4.208 5 C -0.057 4.057 6 N -0.259 5.259 7 C 0.068 3.932 8 C -0.544 4.544 9 H 0.079 0.921 10 C -0.146 4.146 11 N -0.539 5.539 12 Si 0.723 3.277 13 H -0.202 1.202 14 H -0.214 1.214 15 H -0.203 1.203 16 C -0.046 4.046 17 C -0.147 4.147 18 C -0.216 4.216 19 C -0.227 4.227 20 H 0.099 0.901 21 H 0.106 0.894 22 H 0.105 0.895 23 H 0.109 0.891 24 H 0.123 0.877 25 H 0.106 0.894 26 H 0.042 0.958 27 H 0.060 0.940 28 H 0.003 0.997 29 H 0.070 0.930 30 H 0.082 0.918 31 H 0.040 0.960 32 H 0.130 0.870 33 H 0.107 0.893 34 H 0.109 0.891 35 H 0.107 0.893 36 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -12.651 -3.108 -5.035 13.966 hybrid contribution 0.565 0.621 0.257 0.878 sum -12.086 -2.487 -4.778 13.233 Atomic orbital electron populations 1.22270 0.95132 1.04335 1.04297 1.24733 0.91635 0.90740 0.70194 1.90420 1.71952 1.35366 1.35551 1.22246 0.97581 0.96483 1.04495 1.21751 0.90225 0.91755 1.01947 1.62143 1.14164 1.18800 1.30804 1.19746 0.80717 0.96445 0.96244 1.21134 0.91947 1.45352 0.95946 0.92091 1.24963 0.96039 0.95781 0.97771 1.69949 0.98321 1.50010 1.35609 0.86602 0.76832 0.79125 0.85103 1.20213 1.21389 1.20307 1.21649 0.98785 0.92182 0.92003 1.22248 1.01492 0.95129 0.95878 1.22967 0.91370 1.03661 1.03581 1.22940 1.00182 0.98848 1.00764 0.90128 0.89354 0.89525 0.89052 0.87711 0.89375 0.95841 0.94012 0.99657 0.92967 0.91846 0.95951 0.86983 0.89274 0.89115 0.89343 0.89531 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.87 10.33 36.01 0.37 -1.50 16 2 C 0.35 4.91 7.27 -29.03 -0.21 4.70 16 3 O -0.46 -8.44 16.72 6.00 0.10 -8.34 16 4 C -0.17 -2.46 5.50 -27.88 -0.15 -2.61 16 5 C 0.07 1.42 4.09 -3.82 -0.02 1.41 16 6 N -0.53 -11.43 4.45 -236.07 -1.05 -12.48 16 7 C 0.19 5.09 4.60 -4.97 -0.02 5.07 16 8 C -0.51 -14.44 8.52 -34.44 -0.29 -14.74 16 9 H 0.06 1.72 7.37 -52.49 -0.39 1.34 16 10 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 11 N -0.90 -27.16 13.29 55.43 0.74 -26.42 16 12 Si 0.90 22.14 29.54 -169.99 -5.02 17.12 16 13 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 14 H -0.29 -7.04 7.11 56.52 0.40 -6.63 16 15 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 16 C 0.08 1.47 5.11 -3.83 -0.02 1.45 16 17 C -0.13 -2.19 4.73 -90.62 -0.43 -2.62 16 18 C -0.18 -2.87 10.05 -26.73 -0.27 -3.14 16 19 C -0.19 -2.58 10.25 -26.73 -0.27 -2.86 16 20 H 0.08 0.56 8.00 -51.93 -0.42 0.15 16 21 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 22 H 0.09 0.72 8.14 -51.93 -0.42 0.29 16 23 H 0.09 1.13 6.34 -51.92 -0.33 0.80 16 24 H 0.10 1.43 8.14 -51.93 -0.42 1.00 16 25 H 0.09 2.00 6.92 -51.92 -0.36 1.64 16 26 H 0.02 0.49 8.08 -51.93 -0.42 0.07 16 27 H 0.04 1.16 6.87 -51.93 -0.36 0.80 16 28 H -0.01 -0.41 8.06 -51.93 -0.42 -0.83 16 29 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 30 H 0.06 0.96 6.04 -51.93 -0.31 0.64 16 31 H 0.02 0.42 7.84 -51.93 -0.41 0.01 16 32 H 0.11 2.07 8.14 -51.93 -0.42 1.65 16 33 H 0.09 1.45 8.03 -51.93 -0.42 1.03 16 34 H 0.09 1.43 8.14 -51.93 -0.42 1.01 16 35 H 0.09 1.08 8.14 -51.93 -0.42 0.65 16 36 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16 LS Contribution 300.08 15.07 4.52 4.52 Total: -1.00 -31.85 300.08 -8.04 -39.89 By element: Atomic # 1 Polarization: 4.96 SS G_CDS: -5.92 Total: -0.96 kcal Atomic # 6 Polarization: -11.92 SS G_CDS: -1.41 Total: -13.33 kcal Atomic # 7 Polarization: -38.59 SS G_CDS: -0.31 Total: -38.90 kcal Atomic # 8 Polarization: -8.44 SS G_CDS: 0.10 Total: -8.34 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -5.02 Total: 17.12 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -31.85 -8.04 -39.89 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000772802633.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.482 kcal (2) G-P(sol) polarization free energy of solvation -31.848 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.366 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.042 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.890 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.408 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds