Wall clock time and date at job start Mon Mar 30 2020 03:14:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 O 1.20756 * 120.00082 * 2 1 4 4 C 1.50700 * 119.99677 * 179.97438 * 2 1 3 5 5 C 1.53000 * 109.47119 * 179.97438 * 4 2 1 6 6 N 1.46898 * 109.47348 * 180.02562 * 5 4 2 7 7 C 1.46894 * 111.00052 * 190.00416 * 6 5 4 8 8 C 1.50709 * 109.47267 * 71.30537 * 7 6 5 9 9 H 1.07997 * 119.99465 * 355.27019 * 8 7 6 10 10 C 1.37870 * 120.00000 * 175.27117 * 8 7 6 11 11 N 1.31514 * 120.00154 * 359.97438 * 10 8 7 12 12 Si 1.86804 * 120.00101 * 179.97438 * 10 8 7 13 13 H 1.48501 * 109.46963 * 60.00092 * 12 10 8 14 14 H 1.48500 * 109.46978 * 180.02562 * 12 10 8 15 15 H 1.48497 * 109.47006 * 300.00241 * 12 10 8 16 16 C 1.46900 * 110.99934 * 66.05107 * 6 5 4 17 17 C 1.52996 * 109.47112 * 191.46009 * 16 6 5 18 18 C 1.53003 * 117.49547 * 243.12967 * 17 16 6 19 19 C 1.53000 * 60.00112 * 252.51090 * 18 17 16 20 20 H 1.09003 * 109.47225 * 180.02562 * 1 2 3 21 21 H 1.09002 * 109.47149 * 300.00392 * 1 2 3 22 22 H 1.09000 * 109.47239 * 60.00029 * 1 2 3 23 23 H 1.09009 * 109.47052 * 60.00148 * 4 2 1 24 24 H 1.08995 * 109.47628 * 300.00546 * 4 2 1 25 25 H 1.09009 * 109.46822 * 60.00271 * 5 4 2 26 26 H 1.08995 * 109.47532 * 300.00869 * 5 4 2 27 27 H 1.09002 * 109.46991 * 191.30304 * 7 6 5 28 28 H 1.09001 * 109.47459 * 311.30161 * 7 6 5 29 29 H 0.97002 * 120.00323 * 179.97438 * 11 10 8 30 30 H 1.09005 * 109.46774 * 311.45553 * 16 6 5 31 31 H 1.09000 * 109.47139 * 71.45513 * 16 6 5 32 32 H 1.08995 * 115.55278 * 28.83511 * 17 16 6 33 33 H 1.08995 * 117.50195 * 359.97438 * 18 17 16 34 34 H 1.09004 * 117.49922 * 145.02395 * 18 17 16 35 35 H 1.09004 * 117.50117 * 252.51409 * 19 18 17 36 36 H 1.09002 * 117.50445 * 107.48868 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1108 1.0458 0.0000 4 6 2.2604 -1.3051 0.0006 5 6 3.7647 -1.0257 -0.0002 6 7 4.4992 -2.2978 -0.0002 7 6 5.9321 -2.0785 0.2373 8 6 6.1469 -1.6714 1.6724 9 1 5.2984 -1.5102 2.3206 10 6 7.4267 -1.5050 2.1575 11 7 8.4600 -1.7018 1.3681 12 14 7.6930 -0.9998 3.9361 13 1 7.0986 -2.0214 4.8351 14 1 9.1489 -0.8887 4.2064 15 1 7.0431 0.3129 4.1804 16 6 4.2797 -3.0324 -1.2533 17 6 4.8149 -4.4584 -1.1090 18 6 5.9704 -4.8749 -2.0213 19 6 4.5648 -5.4273 -2.2665 20 1 -0.3634 -1.0277 0.0005 21 1 -0.3633 0.5139 0.8900 22 1 -0.3634 0.5138 -0.8900 23 1 1.9971 -1.8771 -0.8892 24 1 1.9971 -1.8764 0.8907 25 1 4.0284 -0.4535 0.8894 26 1 4.0277 -0.4546 -0.8905 27 1 6.4791 -2.9994 0.0351 28 1 6.2931 -1.2892 -0.4222 29 1 9.3604 -1.5844 1.7093 30 1 3.2125 -3.0653 -1.4730 31 1 4.8025 -2.5285 -2.0662 32 1 4.7988 -4.8666 -0.0986 33 1 6.3490 -4.1331 -2.7246 34 1 6.7149 -5.5573 -1.6110 35 1 4.3845 -6.4730 -2.0174 36 1 4.0189 -5.0488 -3.1307 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000772802633.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:14:05 Heat of formation + Delta-G solvation = -39.332737 kcal Electronic energy + Delta-G solvation = -15606.728941 eV Core-core repulsion = 13090.765617 eV Total energy + Delta-G solvation = -2515.963324 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.55484 -39.20194 -36.99672 -34.77057 -32.64567 -30.45958 -29.48483 -26.76551 -24.70668 -23.14739 -22.34499 -21.05888 -20.38990 -18.57510 -17.23682 -16.87136 -16.58278 -16.30614 -15.95040 -15.51232 -15.22894 -14.78270 -14.32961 -14.12081 -13.82747 -13.29378 -12.98252 -12.94296 -12.80378 -12.67326 -12.39578 -12.34710 -12.25093 -11.94972 -11.80465 -11.40380 -11.07150 -10.69642 -10.56698 -10.51053 -9.06689 -8.20502 -6.30127 1.07533 1.37593 1.41348 1.48933 2.38730 2.88902 3.05845 3.13045 3.52100 3.91841 4.01091 4.07887 4.18849 4.22772 4.40966 4.53306 4.61366 4.70063 4.73862 4.80917 4.83258 4.86465 5.03179 5.04812 5.06589 5.23157 5.27887 5.29836 5.34920 5.43704 5.65262 6.07168 6.32395 6.63052 6.67537 6.85031 7.38606 8.90262 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.014697 B = 0.009771 C = 0.006225 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1904.708398 B = 2864.871221 C = 4496.958265 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.355 3.645 3 O -0.515 6.515 4 C -0.162 4.162 5 C 0.073 3.927 6 N -0.535 5.535 7 C 0.211 3.789 8 C -0.524 4.524 9 H 0.059 0.941 10 C 0.001 3.999 11 N -0.934 5.934 12 Si 0.966 3.034 13 H -0.264 1.264 14 H -0.281 1.281 15 H -0.273 1.273 16 C 0.083 3.917 17 C -0.154 4.154 18 C -0.200 4.200 19 C -0.144 4.144 20 H 0.111 0.889 21 H 0.097 0.903 22 H 0.101 0.899 23 H 0.124 0.876 24 H 0.121 0.879 25 H 0.049 0.951 26 H 0.004 0.996 27 H 0.021 0.979 28 H -0.055 1.055 29 H 0.264 0.736 30 H 0.102 0.898 31 H 0.009 0.991 32 H 0.093 0.907 33 H 0.080 0.920 34 H 0.086 0.914 35 H 0.111 0.889 36 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.640 -4.566 -5.299 17.133 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.248 4.248 2 C 0.234 3.766 3 O -0.393 6.393 4 C -0.199 4.199 5 C -0.055 4.055 6 N -0.259 5.259 7 C 0.084 3.916 8 C -0.562 4.562 9 H 0.077 0.923 10 C -0.197 4.197 11 N -0.575 5.575 12 Si 0.790 3.210 13 H -0.189 1.189 14 H -0.206 1.206 15 H -0.198 1.198 16 C -0.044 4.044 17 C -0.173 4.173 18 C -0.237 4.237 19 C -0.181 4.181 20 H 0.130 0.870 21 H 0.116 0.884 22 H 0.119 0.881 23 H 0.142 0.858 24 H 0.139 0.861 25 H 0.067 0.933 26 H 0.023 0.977 27 H 0.040 0.960 28 H -0.037 1.037 29 H 0.073 0.927 30 H 0.120 0.880 31 H 0.028 0.972 32 H 0.112 0.888 33 H 0.098 0.902 34 H 0.105 0.895 35 H 0.129 0.871 36 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -15.317 -4.311 -4.919 16.655 hybrid contribution 1.387 0.964 0.160 1.697 sum -13.930 -3.347 -4.759 15.096 Atomic orbital electron populations 1.22243 0.90406 1.06825 1.05327 1.25331 0.94037 0.89306 0.67927 1.90424 1.73510 1.36936 1.38436 1.22235 0.93072 0.97844 1.06740 1.21683 0.94124 0.90526 0.99170 1.62104 1.10946 1.19529 1.33279 1.19352 0.83822 0.93788 0.94603 1.21465 0.92226 1.45552 0.96964 0.92275 1.25895 0.95687 0.95552 1.02551 1.70081 0.98802 1.50813 1.37763 0.85495 0.77068 0.78978 0.79451 1.18859 1.20589 1.19833 1.21778 1.00995 0.91982 0.89674 1.22165 1.03355 0.95499 0.96254 1.23006 0.92758 1.04195 1.03764 1.23038 0.97020 0.99059 0.98954 0.86986 0.88429 0.88080 0.85837 0.86119 0.93264 0.97748 0.96044 1.03697 0.92739 0.88012 0.97228 0.88847 0.90175 0.89526 0.87088 0.87262 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.79 10.33 71.24 0.74 -2.06 16 2 C 0.35 9.33 7.27 29.10 0.21 9.54 16 3 O -0.52 -19.19 16.72 -1.44 -0.02 -19.21 16 4 C -0.16 -4.36 5.50 29.85 0.16 -4.19 16 5 C 0.07 3.00 4.09 86.30 0.35 3.35 16 6 N -0.53 -23.42 4.45 -900.79 -4.00 -27.42 16 7 C 0.21 11.72 4.60 85.56 0.39 12.12 16 8 C -0.52 -31.10 8.52 25.60 0.22 -30.88 16 9 H 0.06 3.45 7.37 -2.91 -0.02 3.43 16 10 C 0.00 0.06 5.46 84.65 0.46 0.52 16 11 N -0.93 -58.26 13.29 21.44 0.28 -57.97 16 12 Si 0.97 46.10 29.54 68.60 2.03 48.13 16 13 H -0.26 -12.00 7.11 99.48 0.71 -11.29 16 14 H -0.28 -12.98 7.11 99.48 0.71 -12.27 16 15 H -0.27 -12.77 7.11 99.48 0.71 -12.06 16 16 C 0.08 2.93 5.11 86.30 0.44 3.37 16 17 C -0.15 -5.14 4.73 -10.79 -0.05 -5.19 16 18 C -0.20 -6.42 10.05 30.60 0.31 -6.11 16 19 C -0.14 -3.48 10.25 30.60 0.31 -3.16 16 20 H 0.11 0.96 8.00 -2.39 -0.02 0.95 16 21 H 0.10 1.34 8.14 -2.39 -0.02 1.32 16 22 H 0.10 1.28 8.14 -2.39 -0.02 1.26 16 23 H 0.12 2.55 6.34 -2.38 -0.02 2.53 16 24 H 0.12 2.95 8.14 -2.39 -0.02 2.93 16 25 H 0.05 2.36 6.92 -2.38 -0.02 2.34 16 26 H 0.00 0.19 8.08 -2.39 -0.02 0.17 16 27 H 0.02 1.26 6.87 -2.39 -0.02 1.25 16 28 H -0.05 -3.39 8.06 -2.39 -0.02 -3.41 16 29 H 0.26 15.48 8.31 -92.71 -0.77 14.71 16 30 H 0.10 2.76 6.04 -2.38 -0.01 2.74 16 31 H 0.01 0.36 7.84 -2.39 -0.02 0.34 16 32 H 0.09 3.47 8.14 -2.39 -0.02 3.45 16 33 H 0.08 2.67 8.03 -2.39 -0.02 2.65 16 34 H 0.09 2.79 8.14 -2.38 -0.02 2.77 16 35 H 0.11 2.25 8.14 -2.38 -0.02 2.23 16 36 H 0.11 2.20 8.14 -2.39 -0.02 2.18 16 Total: -1.00 -73.82 300.08 2.87 -70.96 By element: Atomic # 1 Polarization: 7.17 SS G_CDS: 1.03 Total: 8.21 kcal Atomic # 6 Polarization: -26.24 SS G_CDS: 3.55 Total: -22.69 kcal Atomic # 7 Polarization: -81.68 SS G_CDS: -3.72 Total: -85.39 kcal Atomic # 8 Polarization: -19.19 SS G_CDS: -0.02 Total: -19.21 kcal Atomic # 14 Polarization: 46.10 SS G_CDS: 2.03 Total: 48.13 kcal Total: -73.82 2.87 -70.96 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000772802633.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.624 kcal (2) G-P(sol) polarization free energy of solvation -73.823 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.199 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.867 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.957 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.333 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds