Wall clock time and date at job start Mon Mar 30 2020 02:47:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.70324 * 2 1 4 4 C 1.53297 * 109.71312 * 239.41170 * 2 1 3 5 5 N 1.46823 * 109.40277 * 186.51741 * 4 2 1 6 6 C 1.46902 * 111.00392 * 189.75535 * 5 4 2 7 7 C 1.52991 * 109.47333 * 170.00258 * 6 5 4 8 8 C 1.50706 * 109.47203 * 179.97438 * 7 6 5 9 9 H 1.08002 * 119.99705 * 0.02562 * 8 7 6 10 10 C 1.37874 * 120.00268 * 180.02562 * 8 7 6 11 11 N 1.31519 * 119.99632 * 359.97438 * 10 8 7 12 12 Si 1.86800 * 120.00055 * 180.02562 * 10 8 7 13 13 H 1.48493 * 109.46941 * 359.97438 * 12 10 8 14 14 H 1.48494 * 109.47052 * 119.99692 * 12 10 8 15 15 H 1.48502 * 109.46664 * 239.99771 * 12 10 8 16 16 C 1.46834 * 111.56449 * 65.38907 * 5 4 2 17 17 C 1.53297 * 109.39919 * 294.61456 * 16 5 4 18 18 H 1.09003 * 109.71014 * 294.10395 * 17 16 5 19 19 C 1.52999 * 109.70879 * 173.48005 * 17 16 5 20 20 C 1.51438 * 108.24311 * 53.79055 * 17 16 5 21 21 O 1.20757 * 121.11179 * 130.99967 * 20 17 16 22 22 H 1.09002 * 109.47153 * 180.58513 * 1 2 3 23 23 H 1.09001 * 109.46832 * 60.58704 * 1 2 3 24 24 H 1.09004 * 109.47261 * 300.58685 * 1 2 3 25 25 H 1.08998 * 109.48440 * 306.50018 * 4 2 1 26 26 H 1.09001 * 109.47686 * 66.54140 * 4 2 1 27 27 H 1.09004 * 109.46874 * 290.00336 * 6 5 4 28 28 H 1.08997 * 109.46769 * 49.99775 * 6 5 4 29 29 H 1.08994 * 109.47171 * 299.99960 * 7 6 5 30 30 H 1.09001 * 109.47292 * 60.00415 * 7 6 5 31 31 H 0.96999 * 119.99695 * 180.02562 * 11 10 8 32 32 H 1.09000 * 109.48187 * 54.59006 * 16 5 4 33 33 H 1.08996 * 109.48369 * 174.63379 * 16 5 4 34 34 H 1.09001 * 109.47144 * 60.00194 * 19 17 16 35 35 H 1.09001 * 109.46938 * 179.97438 * 19 17 16 36 36 H 1.08996 * 109.46732 * 299.99799 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8975 1.0262 0.0000 4 6 2.0471 -0.7344 -1.2423 5 7 3.5068 -0.8672 -1.1581 6 6 4.0652 -1.3549 -2.4263 7 6 5.5907 -1.2447 -2.3878 8 6 6.1636 -1.7457 -3.6886 9 1 5.5053 -2.1062 -4.4652 10 6 7.5279 -1.7438 -3.8872 11 7 8.3294 -1.3043 -2.9416 12 14 8.2379 -2.3641 -5.4998 13 1 7.1335 -2.7997 -6.3918 14 1 9.0036 -1.2738 -6.1555 15 1 9.1409 -3.5126 -5.2338 16 6 3.9065 -1.7313 -0.0402 17 6 3.5157 -1.0646 1.2837 18 1 4.0969 -0.1529 1.4218 19 6 3.7801 -2.0267 2.4436 20 6 2.0407 -0.7263 1.2268 21 8 1.2967 -1.0252 2.1297 22 1 -0.3633 -1.0276 0.0105 23 1 -0.3633 0.5047 -0.8952 24 1 -0.3634 0.5229 0.8847 25 1 1.5943 -1.7245 -1.2941 26 1 1.7845 -0.1672 -2.1353 27 1 3.7798 -2.3967 -2.5721 28 1 3.6781 -0.7536 -3.2488 29 1 5.8762 -0.2030 -2.2419 30 1 5.9778 -1.8462 -1.5652 31 1 9.2893 -1.3027 -3.0814 32 1 3.4014 -2.6934 -0.1258 33 1 4.9855 -1.8834 -0.0661 34 1 4.8389 -2.2844 2.4678 35 1 3.5013 -1.5488 3.3828 36 1 3.1887 -2.9320 2.3067 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000829232923.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:47:55 Heat of formation + Delta-G solvation = -54.546346 kcal Electronic energy + Delta-G solvation = -15861.520791 eV Core-core repulsion = 13344.897756 eV Total energy + Delta-G solvation = -2516.623035 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.17240 -37.36417 -33.91090 -33.63080 -32.32464 -29.34382 -26.56818 -26.14600 -24.43931 -22.30239 -21.39499 -19.96438 -18.81049 -16.56450 -16.01158 -15.73231 -15.26409 -14.76613 -14.47048 -13.95813 -13.62539 -12.90267 -12.79593 -12.62244 -12.37406 -12.26292 -11.99915 -11.67955 -11.59816 -11.30294 -11.07695 -10.97719 -10.90783 -10.63910 -10.48199 -9.91760 -9.43627 -9.21110 -9.08897 -8.36620 -7.87087 -6.03306 -4.05744 2.06146 3.29168 3.36917 3.40490 4.03487 4.22411 4.46774 4.82523 4.90299 5.03822 5.22086 5.32785 5.32959 5.40238 5.54763 5.69319 5.71703 5.74730 5.91343 5.96496 5.98337 6.09220 6.13522 6.16997 6.27325 6.34678 6.43286 6.88744 7.33594 7.45440 7.62309 7.73571 7.83368 8.02739 8.38788 9.01502 9.58359 11.08065 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.044139 B = 0.005897 C = 0.005373 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 634.209627 B = 4746.842603 C = 5209.714203 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.138 4.138 3 H 0.111 0.889 4 C 0.065 3.935 5 N -0.544 5.544 6 C 0.064 3.936 7 C 0.026 3.974 8 C -0.522 4.522 9 H 0.055 0.945 10 C 0.059 3.941 11 N -0.893 5.893 12 Si 0.892 3.108 13 H -0.273 1.273 14 H -0.284 1.284 15 H -0.284 1.284 16 C 0.064 3.936 17 C -0.138 4.138 18 H 0.112 0.888 19 C -0.137 4.137 20 C 0.369 3.631 21 O -0.461 6.461 22 H 0.055 0.945 23 H 0.062 0.938 24 H 0.061 0.939 25 H 0.031 0.969 26 H 0.083 0.917 27 H 0.022 0.978 28 H 0.064 0.936 29 H 0.026 0.974 30 H 0.018 0.982 31 H 0.260 0.740 32 H 0.031 0.969 33 H 0.100 0.900 34 H 0.065 0.935 35 H 0.060 0.940 36 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.292 1.402 6.379 13.045 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.158 4.158 3 H 0.129 0.871 4 C -0.063 4.063 5 N -0.267 5.267 6 C -0.062 4.062 7 C -0.011 4.011 8 C -0.561 4.561 9 H 0.073 0.927 10 C -0.143 4.143 11 N -0.532 5.532 12 Si 0.720 3.280 13 H -0.198 1.198 14 H -0.210 1.210 15 H -0.210 1.210 16 C -0.064 4.064 17 C -0.157 4.157 18 H 0.130 0.870 19 C -0.195 4.195 20 C 0.245 3.755 21 O -0.334 6.334 22 H 0.074 0.926 23 H 0.081 0.919 24 H 0.080 0.920 25 H 0.050 0.950 26 H 0.101 0.899 27 H 0.040 0.960 28 H 0.083 0.917 29 H 0.045 0.955 30 H 0.036 0.964 31 H 0.070 0.930 32 H 0.049 0.951 33 H 0.118 0.882 34 H 0.084 0.916 35 H 0.079 0.921 36 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -11.315 1.720 6.964 13.398 hybrid contribution 0.269 -1.054 -1.141 1.577 sum -11.046 0.666 5.824 12.505 Atomic orbital electron populations 1.21620 0.93401 1.02373 1.02099 1.21966 0.96856 1.01954 0.94983 0.87094 1.22090 0.88966 0.98561 0.96710 1.61863 1.08193 1.51129 1.05560 1.22335 0.99494 0.96505 0.87842 1.19132 0.87106 0.98009 0.96843 1.21217 0.91753 1.42209 1.00948 0.92723 1.24986 0.97235 0.95392 0.96651 1.69977 1.03515 1.46836 1.32869 0.86543 0.79115 0.78529 0.83854 1.19780 1.20965 1.21035 1.22171 1.03031 0.92984 0.88213 1.21976 0.95027 1.01704 0.96986 0.87002 1.21614 1.02024 0.98811 0.97061 1.25037 0.90648 0.74132 0.85707 1.90326 1.60343 1.44232 1.38516 0.92577 0.91905 0.92002 0.95041 0.89865 0.96010 0.91732 0.95549 0.96390 0.93016 0.95089 0.88158 0.91558 0.92106 0.92641 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.51 8.63 37.16 0.32 -1.19 16 2 C -0.14 -1.75 3.17 -91.26 -0.29 -2.04 16 3 H 0.11 1.32 8.14 -51.93 -0.42 0.90 16 4 C 0.07 0.91 4.80 -3.71 -0.02 0.90 16 5 N -0.54 -9.24 4.58 -234.37 -1.07 -10.31 16 6 C 0.06 1.29 4.90 -3.83 -0.02 1.27 16 7 C 0.03 0.66 4.90 -27.88 -0.14 0.52 16 8 C -0.52 -14.40 9.11 -34.44 -0.31 -14.71 16 9 H 0.05 1.47 7.74 -52.49 -0.41 1.06 16 10 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 11 N -0.89 -26.30 13.29 55.43 0.74 -25.56 16 12 Si 0.89 21.26 29.54 -169.99 -5.02 16.24 16 13 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 14 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 15 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 16 C 0.06 1.03 4.66 -3.71 -0.02 1.02 16 17 C -0.14 -1.93 3.17 -91.26 -0.29 -2.21 16 18 H 0.11 1.51 8.14 -51.93 -0.42 1.09 16 19 C -0.14 -1.75 8.63 37.16 0.32 -1.43 16 20 C 0.37 5.27 6.48 -28.31 -0.18 5.08 16 21 O -0.46 -7.44 15.97 6.00 0.10 -7.35 16 22 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 23 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 24 H 0.06 0.68 8.06 -51.93 -0.42 0.26 16 25 H 0.03 0.44 8.10 -51.93 -0.42 0.02 16 26 H 0.08 1.08 7.94 -51.93 -0.41 0.67 16 27 H 0.02 0.44 8.13 -51.93 -0.42 0.01 16 28 H 0.06 1.26 7.93 -51.93 -0.41 0.85 16 29 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.02 0.47 6.35 -51.93 -0.33 0.14 16 31 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 32 H 0.03 0.49 8.10 -51.93 -0.42 0.07 16 33 H 0.10 1.79 6.06 -51.93 -0.31 1.48 16 34 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 35 H 0.06 0.75 8.06 -51.93 -0.42 0.33 16 36 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 LS Contribution 290.38 15.07 4.38 4.38 Total: -1.00 -29.66 290.38 -7.68 -37.34 By element: Atomic # 1 Polarization: 2.58 SS G_CDS: -6.07 Total: -3.49 kcal Atomic # 6 Polarization: -10.52 SS G_CDS: -0.72 Total: -11.24 kcal Atomic # 7 Polarization: -35.54 SS G_CDS: -0.34 Total: -35.87 kcal Atomic # 8 Polarization: -7.44 SS G_CDS: 0.10 Total: -7.35 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.24 kcal Total LS contribution 4.38 Total: 4.38 kcal Total: -29.66 -7.68 -37.34 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000829232923.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.205 kcal (2) G-P(sol) polarization free energy of solvation -29.664 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.869 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.678 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.342 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.546 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds