Wall clock time and date at job start Mon Mar 30 2020 02:47:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.70324 * 2 1 4 4 C 1.53297 * 109.71312 * 239.41170 * 2 1 3 5 5 N 1.46823 * 109.40277 * 186.51741 * 4 2 1 6 6 C 1.46902 * 111.00392 * 189.75535 * 5 4 2 7 7 C 1.52991 * 109.47333 * 170.00258 * 6 5 4 8 8 C 1.50706 * 109.47203 * 179.97438 * 7 6 5 9 9 H 1.08002 * 119.99705 * 0.02562 * 8 7 6 10 10 C 1.37874 * 120.00268 * 180.02562 * 8 7 6 11 11 N 1.31519 * 119.99632 * 359.97438 * 10 8 7 12 12 Si 1.86800 * 120.00055 * 180.02562 * 10 8 7 13 13 H 1.48493 * 109.46941 * 359.97438 * 12 10 8 14 14 H 1.48494 * 109.47052 * 119.99692 * 12 10 8 15 15 H 1.48502 * 109.46664 * 239.99771 * 12 10 8 16 16 C 1.46834 * 111.56449 * 65.38907 * 5 4 2 17 17 C 1.53297 * 109.39919 * 294.61456 * 16 5 4 18 18 H 1.09003 * 109.71014 * 294.10395 * 17 16 5 19 19 C 1.52999 * 109.70879 * 173.48005 * 17 16 5 20 20 C 1.51438 * 108.24311 * 53.79055 * 17 16 5 21 21 O 1.20757 * 121.11179 * 130.99967 * 20 17 16 22 22 H 1.09002 * 109.47153 * 180.58513 * 1 2 3 23 23 H 1.09001 * 109.46832 * 60.58704 * 1 2 3 24 24 H 1.09004 * 109.47261 * 300.58685 * 1 2 3 25 25 H 1.08998 * 109.48440 * 306.50018 * 4 2 1 26 26 H 1.09001 * 109.47686 * 66.54140 * 4 2 1 27 27 H 1.09004 * 109.46874 * 290.00336 * 6 5 4 28 28 H 1.08997 * 109.46769 * 49.99775 * 6 5 4 29 29 H 1.08994 * 109.47171 * 299.99960 * 7 6 5 30 30 H 1.09001 * 109.47292 * 60.00415 * 7 6 5 31 31 H 0.96999 * 119.99695 * 180.02562 * 11 10 8 32 32 H 1.09000 * 109.48187 * 54.59006 * 16 5 4 33 33 H 1.08996 * 109.48369 * 174.63379 * 16 5 4 34 34 H 1.09001 * 109.47144 * 60.00194 * 19 17 16 35 35 H 1.09001 * 109.46938 * 179.97438 * 19 17 16 36 36 H 1.08996 * 109.46732 * 299.99799 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8975 1.0262 0.0000 4 6 2.0471 -0.7344 -1.2423 5 7 3.5068 -0.8672 -1.1581 6 6 4.0652 -1.3549 -2.4263 7 6 5.5907 -1.2447 -2.3878 8 6 6.1636 -1.7457 -3.6886 9 1 5.5053 -2.1062 -4.4652 10 6 7.5279 -1.7438 -3.8872 11 7 8.3294 -1.3043 -2.9416 12 14 8.2379 -2.3641 -5.4998 13 1 7.1335 -2.7997 -6.3918 14 1 9.0036 -1.2738 -6.1555 15 1 9.1409 -3.5126 -5.2338 16 6 3.9065 -1.7313 -0.0402 17 6 3.5157 -1.0646 1.2837 18 1 4.0969 -0.1529 1.4218 19 6 3.7801 -2.0267 2.4436 20 6 2.0407 -0.7263 1.2268 21 8 1.2967 -1.0252 2.1297 22 1 -0.3633 -1.0276 0.0105 23 1 -0.3633 0.5047 -0.8952 24 1 -0.3634 0.5229 0.8847 25 1 1.5943 -1.7245 -1.2941 26 1 1.7845 -0.1672 -2.1353 27 1 3.7798 -2.3967 -2.5721 28 1 3.6781 -0.7536 -3.2488 29 1 5.8762 -0.2030 -2.2419 30 1 5.9778 -1.8462 -1.5652 31 1 9.2893 -1.3027 -3.0814 32 1 3.4014 -2.6934 -0.1258 33 1 4.9855 -1.8834 -0.0661 34 1 4.8389 -2.2844 2.4678 35 1 3.5013 -1.5488 3.3828 36 1 3.1887 -2.9320 2.3067 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000829232923.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:47:55 Heat of formation + Delta-G solvation = -72.726842 kcal Electronic energy + Delta-G solvation = -15862.309156 eV Core-core repulsion = 13344.897756 eV Total energy + Delta-G solvation = -2517.411401 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.35770 -38.71009 -35.54693 -34.86076 -33.95874 -31.07532 -27.74900 -27.45642 -26.06534 -23.86198 -22.49576 -21.60029 -19.95741 -18.57199 -17.14451 -17.03552 -16.65560 -16.41471 -15.93500 -15.38090 -14.95496 -14.45599 -14.15553 -13.89925 -13.72038 -13.46182 -13.21004 -13.03396 -12.90087 -12.74917 -12.70987 -12.39643 -12.27233 -12.00058 -11.89304 -11.70605 -11.27983 -11.15645 -10.52369 -10.29342 -9.26219 -8.17688 -6.27912 0.91255 1.42253 1.43055 1.55557 2.42028 2.85705 3.04174 3.16563 3.72426 3.81141 3.88719 4.11893 4.21852 4.31163 4.41890 4.54140 4.61066 4.64538 4.68658 4.75095 4.87068 4.96949 4.99151 5.04403 5.08910 5.12790 5.20450 5.26527 5.49299 5.69312 5.79676 6.07236 6.22718 6.32162 6.49493 6.89758 7.41164 8.94437 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.044139 B = 0.005897 C = 0.005373 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 634.209627 B = 4746.842603 C = 5209.714203 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.133 4.133 3 H 0.123 0.877 4 C 0.066 3.934 5 N -0.551 5.551 6 C 0.081 3.919 7 C 0.033 3.967 8 C -0.542 4.542 9 H 0.060 0.940 10 C 0.003 3.997 11 N -0.931 5.931 12 Si 0.963 3.037 13 H -0.262 1.262 14 H -0.279 1.279 15 H -0.280 1.280 16 C 0.068 3.932 17 C -0.135 4.135 18 H 0.117 0.883 19 C -0.134 4.134 20 C 0.371 3.629 21 O -0.479 6.479 22 H 0.049 0.951 23 H 0.084 0.916 24 H 0.062 0.938 25 H 0.034 0.966 26 H 0.098 0.902 27 H 0.021 0.979 28 H 0.072 0.928 29 H -0.003 1.003 30 H -0.002 1.002 31 H 0.263 0.737 32 H 0.032 0.968 33 H 0.076 0.924 34 H 0.071 0.929 35 H 0.067 0.933 36 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.409 1.476 5.606 13.696 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.152 4.152 3 H 0.141 0.859 4 C -0.061 4.061 5 N -0.275 5.275 6 C -0.046 4.046 7 C -0.004 4.004 8 C -0.581 4.581 9 H 0.078 0.922 10 C -0.195 4.195 11 N -0.571 5.571 12 Si 0.787 3.213 13 H -0.186 1.186 14 H -0.205 1.205 15 H -0.206 1.206 16 C -0.060 4.060 17 C -0.154 4.154 18 H 0.135 0.865 19 C -0.192 4.192 20 C 0.248 3.752 21 O -0.354 6.354 22 H 0.068 0.932 23 H 0.103 0.897 24 H 0.081 0.919 25 H 0.052 0.948 26 H 0.117 0.883 27 H 0.039 0.961 28 H 0.090 0.910 29 H 0.015 0.985 30 H 0.016 0.984 31 H 0.072 0.928 32 H 0.050 0.950 33 H 0.094 0.906 34 H 0.090 0.910 35 H 0.086 0.914 36 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -12.452 1.795 6.194 14.023 hybrid contribution 0.615 -1.064 -0.856 1.498 sum -11.837 0.731 5.337 13.005 Atomic orbital electron populations 1.21600 0.91808 1.02337 1.03252 1.21971 0.98068 1.01984 0.93147 0.85922 1.22173 0.86607 0.99214 0.98155 1.61775 1.10398 1.50998 1.04286 1.21972 0.96177 0.96774 0.89724 1.18966 0.90653 0.95470 0.95300 1.21664 0.92339 1.42081 1.01968 0.92192 1.25901 0.97764 0.95525 1.00308 1.70105 1.03891 1.48034 1.35077 0.85436 0.78435 0.77954 0.79431 1.18601 1.20470 1.20589 1.22082 1.01519 0.93316 0.89116 1.21960 0.95363 1.02013 0.96094 0.86542 1.21595 1.02395 0.98409 0.96791 1.25227 0.90338 0.73673 0.85998 1.90325 1.60594 1.45070 1.39372 0.93186 0.89749 0.91905 0.94798 0.88323 0.96070 0.90970 0.98466 0.98397 0.92833 0.95012 0.90613 0.90990 0.91443 0.92957 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.56 8.63 71.98 0.62 -1.94 16 2 C -0.13 -3.05 3.17 -11.21 -0.04 -3.08 16 3 H 0.12 2.59 8.14 -2.39 -0.02 2.57 16 4 C 0.07 1.72 4.80 86.42 0.42 2.13 16 5 N -0.55 -18.30 4.58 -895.41 -4.10 -22.39 16 6 C 0.08 3.19 4.90 86.30 0.42 3.62 16 7 C 0.03 1.71 4.90 29.85 0.15 1.85 16 8 C -0.54 -30.02 9.11 25.60 0.23 -29.79 16 9 H 0.06 3.18 7.74 -2.91 -0.02 3.16 16 10 C 0.00 0.17 5.46 84.65 0.46 0.63 16 11 N -0.93 -55.69 13.29 21.45 0.28 -55.40 16 12 Si 0.96 43.44 29.54 68.60 2.03 45.47 16 13 H -0.26 -11.25 7.11 99.48 0.71 -10.55 16 14 H -0.28 -12.31 7.11 99.48 0.71 -11.61 16 15 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 16 C 0.07 2.18 4.66 86.42 0.40 2.59 16 17 C -0.14 -3.68 3.17 -11.21 -0.04 -3.72 16 18 H 0.12 3.08 8.14 -2.39 -0.02 3.06 16 19 C -0.13 -3.33 8.63 71.98 0.62 -2.71 16 20 C 0.37 10.03 6.48 29.57 0.19 10.22 16 21 O -0.48 -14.78 15.97 -1.44 -0.02 -14.81 16 22 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 23 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 24 H 0.06 1.22 8.06 -2.38 -0.02 1.20 16 25 H 0.03 0.88 8.10 -2.39 -0.02 0.86 16 26 H 0.10 2.28 7.94 -2.39 -0.02 2.26 16 27 H 0.02 0.84 8.13 -2.39 -0.02 0.82 16 28 H 0.07 2.74 7.93 -2.39 -0.02 2.72 16 29 H 0.00 -0.17 8.14 -2.39 -0.02 -0.19 16 30 H 0.00 -0.12 6.35 -2.39 -0.02 -0.14 16 31 H 0.26 14.76 8.31 -92.71 -0.77 13.99 16 32 H 0.03 1.01 8.10 -2.39 -0.02 0.99 16 33 H 0.08 2.81 6.06 -2.39 -0.01 2.79 16 34 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 35 H 0.07 1.58 8.06 -2.39 -0.02 1.56 16 36 H 0.05 1.32 8.14 -2.39 -0.02 1.30 16 Total: -1.00 -62.93 290.38 2.66 -60.27 By element: Atomic # 1 Polarization: 6.04 SS G_CDS: 1.03 Total: 7.07 kcal Atomic # 6 Polarization: -23.65 SS G_CDS: 3.45 Total: -20.20 kcal Atomic # 7 Polarization: -73.98 SS G_CDS: -3.81 Total: -77.80 kcal Atomic # 8 Polarization: -14.78 SS G_CDS: -0.02 Total: -14.81 kcal Atomic # 14 Polarization: 43.44 SS G_CDS: 2.03 Total: 45.47 kcal Total: -62.93 2.66 -60.27 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000829232923.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.455 kcal (2) G-P(sol) polarization free energy of solvation -62.934 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.389 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.662 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.272 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.727 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds