Wall clock time and date at job start Mon Mar 30 2020 02:47:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.70782 * 2 1 4 4 C 1.53303 * 109.70975 * 120.62902 * 2 1 3 5 5 N 1.46828 * 109.39743 * 65.89367 * 4 2 1 6 6 C 1.46899 * 110.99863 * 189.75395 * 5 4 2 7 7 C 1.53000 * 109.46968 * 65.31482 * 6 5 4 8 8 C 1.50708 * 109.46999 * 179.97438 * 7 6 5 9 9 H 1.08003 * 119.99901 * 359.97438 * 8 7 6 10 10 C 1.37871 * 119.99887 * 180.02562 * 8 7 6 11 11 N 1.31512 * 120.00464 * 359.97438 * 10 8 7 12 12 Si 1.86801 * 119.99728 * 180.02562 * 10 8 7 13 13 H 1.48494 * 109.47512 * 89.99718 * 12 10 8 14 14 H 1.48500 * 109.47220 * 209.99928 * 12 10 8 15 15 H 1.48497 * 109.47413 * 329.99511 * 12 10 8 16 16 C 1.46827 * 111.56284 * 65.39092 * 5 4 2 17 17 C 1.53299 * 109.39832 * 294.60869 * 16 5 4 18 18 H 1.09000 * 109.74323 * 294.08822 * 17 16 5 19 19 C 1.53003 * 109.70895 * 173.48410 * 17 16 5 20 20 C 1.51430 * 109.71142 * 239.41786 * 2 1 3 21 21 O 1.20761 * 121.11673 * 109.32030 * 20 2 1 22 22 H 1.09002 * 109.47153 * 180.58240 * 1 2 3 23 23 H 1.09001 * 109.46832 * 60.58431 * 1 2 3 24 24 H 1.09004 * 109.47261 * 300.58413 * 1 2 3 25 25 H 1.08997 * 109.48262 * 185.87816 * 4 2 1 26 26 H 1.09007 * 109.48136 * 305.91675 * 4 2 1 27 27 H 1.08999 * 109.47202 * 185.31865 * 6 5 4 28 28 H 1.09008 * 109.47290 * 305.31386 * 6 5 4 29 29 H 1.08998 * 109.47136 * 299.99519 * 7 6 5 30 30 H 1.08995 * 109.47066 * 60.00161 * 7 6 5 31 31 H 0.96999 * 120.00628 * 179.97438 * 11 10 8 32 32 H 1.09007 * 109.47956 * 174.63598 * 16 5 4 33 33 H 1.08997 * 109.48873 * 54.59123 * 16 5 4 34 34 H 1.09007 * 109.47028 * 301.21197 * 19 17 16 35 35 H 1.08997 * 109.46942 * 61.21152 * 19 17 16 36 36 H 1.09002 * 109.47125 * 181.21467 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8976 1.0262 0.0000 4 6 2.0470 -0.7353 1.2419 5 7 1.6789 -2.1542 1.1570 6 6 1.9499 -2.8450 2.4248 7 6 1.0394 -2.2813 3.5175 8 6 1.3169 -2.9905 4.8180 9 1 2.0673 -3.7660 4.8607 10 6 0.6121 -2.6500 5.9529 11 7 -0.3021 -1.7060 5.9009 12 14 0.9566 -3.5286 7.5650 13 1 2.0184 -2.8028 8.3073 14 1 -0.2822 -3.5657 8.3831 15 1 1.4074 -4.9157 7.2863 16 6 2.3570 -2.8216 0.0387 17 6 1.8610 -2.2279 -1.2848 18 1 0.8066 -2.4670 -1.4234 19 6 2.6769 -2.8011 -2.4453 20 6 2.0407 -0.7253 -1.2273 21 8 2.5732 -0.1256 -2.1301 22 1 -0.3633 -1.0276 0.0104 23 1 -0.3633 0.5047 -0.8952 24 1 -0.3634 0.5229 0.8847 25 1 3.1319 -0.6435 1.2933 26 1 1.6021 -0.2971 2.1353 27 1 1.7576 -3.9113 2.3058 28 1 2.9921 -2.6930 2.7059 29 1 1.2318 -1.2150 3.6365 30 1 -0.0027 -2.4334 3.2363 31 1 -0.7983 -1.4667 6.6992 32 1 2.1357 -3.8886 0.0640 33 1 3.4332 -2.6711 0.1240 34 1 3.7316 -2.5688 -2.2976 35 1 2.5448 -3.8823 -2.4831 36 1 2.3356 -2.3603 -3.3820 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000829232924.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:47:57 Heat of formation + Delta-G solvation = -53.771946 kcal Electronic energy + Delta-G solvation = -15972.866957 eV Core-core repulsion = 13456.277503 eV Total energy + Delta-G solvation = -2516.589455 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.18255 -37.42479 -33.87128 -33.48927 -32.38096 -29.33564 -26.62739 -25.91424 -24.32246 -22.35122 -22.07286 -19.93403 -18.29080 -16.59781 -15.84124 -15.71864 -15.01314 -14.72375 -14.50764 -14.31527 -13.76474 -13.00507 -12.85805 -12.39370 -12.28020 -12.23966 -12.02854 -11.68937 -11.40557 -11.31048 -11.10293 -10.98381 -10.94955 -10.57763 -10.46585 -9.90164 -9.43612 -9.21374 -9.08764 -8.36228 -7.85132 -6.03108 -4.05590 2.04411 3.30003 3.36697 3.39501 4.05667 4.25426 4.47295 4.81303 4.91910 5.02598 5.17774 5.32561 5.33396 5.43775 5.56892 5.71437 5.74181 5.84453 5.92883 5.97309 6.01288 6.12087 6.14306 6.18225 6.34120 6.42220 6.53840 6.89268 7.33513 7.45811 7.59997 7.73512 7.83707 8.02929 8.38953 9.01414 9.58455 11.08149 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.048029 B = 0.005977 C = 0.005544 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 582.841262 B = 4683.442846 C = 5049.222382 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.134 4.134 3 H 0.091 0.909 4 C 0.061 3.939 5 N -0.539 5.539 6 C 0.064 3.936 7 C 0.028 3.972 8 C -0.523 4.523 9 H 0.054 0.946 10 C 0.059 3.941 11 N -0.893 5.893 12 Si 0.892 3.108 13 H -0.281 1.281 14 H -0.286 1.286 15 H -0.274 1.274 16 C 0.065 3.935 17 C -0.137 4.137 18 H 0.112 0.888 19 C -0.138 4.138 20 C 0.372 3.628 21 O -0.465 6.465 22 H 0.076 0.924 23 H 0.046 0.954 24 H 0.069 0.931 25 H 0.030 0.970 26 H 0.101 0.899 27 H 0.064 0.936 28 H 0.021 0.979 29 H 0.018 0.982 30 H 0.026 0.974 31 H 0.261 0.739 32 H 0.083 0.917 33 H 0.031 0.969 34 H 0.055 0.945 35 H 0.062 0.938 36 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.129 -0.045 -12.292 12.684 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.154 4.154 3 H 0.109 0.891 4 C -0.067 4.067 5 N -0.264 5.264 6 C -0.062 4.062 7 C -0.010 4.010 8 C -0.562 4.562 9 H 0.072 0.928 10 C -0.142 4.142 11 N -0.532 5.532 12 Si 0.719 3.281 13 H -0.207 1.207 14 H -0.212 1.212 15 H -0.199 1.199 16 C -0.064 4.064 17 C -0.157 4.157 18 H 0.130 0.870 19 C -0.196 4.196 20 C 0.247 3.753 21 O -0.338 6.338 22 H 0.095 0.905 23 H 0.066 0.934 24 H 0.088 0.912 25 H 0.048 0.952 26 H 0.119 0.881 27 H 0.082 0.918 28 H 0.039 0.961 29 H 0.036 0.964 30 H 0.045 0.955 31 H 0.070 0.930 32 H 0.102 0.898 33 H 0.050 0.950 34 H 0.074 0.926 35 H 0.081 0.919 36 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 2.789 0.332 -12.738 13.044 hybrid contribution 0.989 -0.415 1.222 1.626 sum 3.779 -0.083 -11.516 12.121 Atomic orbital electron populations 1.21608 0.91699 1.03791 1.01711 1.22038 0.99069 0.99838 0.94459 0.89108 1.22195 0.97686 0.89181 0.97665 1.61853 1.57925 1.01705 1.04870 1.22339 0.98486 0.97698 0.87683 1.19118 0.95052 0.96062 0.90729 1.21182 1.20736 1.20216 0.94080 0.92803 1.24975 0.95064 0.95183 0.98989 1.69959 1.23938 1.30252 1.29028 0.86605 0.77673 0.80092 0.83681 1.20721 1.21197 1.19899 1.22095 0.95801 0.99174 0.89285 1.21949 1.03074 0.93981 0.96664 0.87040 1.21631 0.99926 1.00670 0.97351 1.25059 0.72891 0.91472 0.85832 1.90341 1.33631 1.71152 1.38715 0.90518 0.93445 0.91160 0.95166 0.88070 0.91750 0.96052 0.96426 0.95538 0.92968 0.89839 0.95042 0.92586 0.91874 0.91993 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.74 9.05 37.16 0.34 -1.41 16 2 C -0.13 -1.90 3.21 -91.26 -0.29 -2.19 16 3 H 0.09 1.22 8.14 -51.93 -0.42 0.80 16 4 C 0.06 0.98 4.76 -3.71 -0.02 0.96 16 5 N -0.54 -8.99 4.07 -234.36 -0.95 -9.94 16 6 C 0.06 1.27 4.90 -3.82 -0.02 1.25 16 7 C 0.03 0.68 4.90 -27.88 -0.14 0.55 16 8 C -0.52 -14.35 9.11 -34.44 -0.31 -14.67 16 9 H 0.05 1.44 7.74 -52.48 -0.41 1.03 16 10 C 0.06 1.66 5.46 -17.82 -0.10 1.57 16 11 N -0.89 -26.17 13.29 55.43 0.74 -25.44 16 12 Si 0.89 21.22 29.54 -169.99 -5.02 16.20 16 13 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 14 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 15 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 16 C 0.07 0.90 4.80 -3.71 -0.02 0.88 16 17 C -0.14 -1.73 2.94 -91.25 -0.27 -2.00 16 18 H 0.11 1.32 7.94 -51.93 -0.41 0.91 16 19 C -0.14 -1.53 8.65 37.16 0.32 -1.21 16 20 C 0.37 5.38 5.97 -28.31 -0.17 5.21 16 21 O -0.46 -7.75 16.91 6.00 0.10 -7.65 16 22 H 0.08 1.07 7.42 -51.93 -0.39 0.69 16 23 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 24 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 25 H 0.03 0.48 8.10 -51.93 -0.42 0.06 16 26 H 0.10 1.80 6.06 -51.92 -0.31 1.48 16 27 H 0.06 1.25 7.93 -51.93 -0.41 0.84 16 28 H 0.02 0.42 8.13 -51.92 -0.42 0.00 16 29 H 0.02 0.46 6.35 -51.93 -0.33 0.13 16 30 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 32 H 0.08 1.07 7.94 -51.93 -0.41 0.66 16 33 H 0.03 0.44 8.10 -51.93 -0.42 0.02 16 34 H 0.06 0.64 8.14 -51.92 -0.42 0.22 16 35 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 36 H 0.06 0.69 8.03 -51.93 -0.42 0.27 16 LS Contribution 289.78 15.07 4.37 4.37 Total: -1.00 -29.51 289.78 -7.47 -36.98 By element: Atomic # 1 Polarization: 2.57 SS G_CDS: -6.02 Total: -3.46 kcal Atomic # 6 Polarization: -10.39 SS G_CDS: -0.67 Total: -11.06 kcal Atomic # 7 Polarization: -35.16 SS G_CDS: -0.22 Total: -35.38 kcal Atomic # 8 Polarization: -7.75 SS G_CDS: 0.10 Total: -7.65 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.20 kcal Total LS contribution 4.37 Total: 4.37 kcal Total: -29.51 -7.47 -36.98 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000829232924.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.793 kcal (2) G-P(sol) polarization free energy of solvation -29.511 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.303 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.469 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.979 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.772 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds