Wall clock time and date at job start Mon Mar 30 2020 02:47:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.70782 * 2 1 4 4 C 1.53303 * 109.70975 * 120.62902 * 2 1 3 5 5 N 1.46828 * 109.39743 * 65.89367 * 4 2 1 6 6 C 1.46899 * 110.99863 * 189.75395 * 5 4 2 7 7 C 1.53000 * 109.46968 * 65.31482 * 6 5 4 8 8 C 1.50708 * 109.46999 * 179.97438 * 7 6 5 9 9 H 1.08003 * 119.99901 * 359.97438 * 8 7 6 10 10 C 1.37871 * 119.99887 * 180.02562 * 8 7 6 11 11 N 1.31512 * 120.00464 * 359.97438 * 10 8 7 12 12 Si 1.86801 * 119.99728 * 180.02562 * 10 8 7 13 13 H 1.48494 * 109.47512 * 89.99718 * 12 10 8 14 14 H 1.48500 * 109.47220 * 209.99928 * 12 10 8 15 15 H 1.48497 * 109.47413 * 329.99511 * 12 10 8 16 16 C 1.46827 * 111.56284 * 65.39092 * 5 4 2 17 17 C 1.53299 * 109.39832 * 294.60869 * 16 5 4 18 18 H 1.09000 * 109.74323 * 294.08822 * 17 16 5 19 19 C 1.53003 * 109.70895 * 173.48410 * 17 16 5 20 20 C 1.51430 * 109.71142 * 239.41786 * 2 1 3 21 21 O 1.20761 * 121.11673 * 109.32030 * 20 2 1 22 22 H 1.09002 * 109.47153 * 180.58240 * 1 2 3 23 23 H 1.09001 * 109.46832 * 60.58431 * 1 2 3 24 24 H 1.09004 * 109.47261 * 300.58413 * 1 2 3 25 25 H 1.08997 * 109.48262 * 185.87816 * 4 2 1 26 26 H 1.09007 * 109.48136 * 305.91675 * 4 2 1 27 27 H 1.08999 * 109.47202 * 185.31865 * 6 5 4 28 28 H 1.09008 * 109.47290 * 305.31386 * 6 5 4 29 29 H 1.08998 * 109.47136 * 299.99519 * 7 6 5 30 30 H 1.08995 * 109.47066 * 60.00161 * 7 6 5 31 31 H 0.96999 * 120.00628 * 179.97438 * 11 10 8 32 32 H 1.09007 * 109.47956 * 174.63598 * 16 5 4 33 33 H 1.08997 * 109.48873 * 54.59123 * 16 5 4 34 34 H 1.09007 * 109.47028 * 301.21197 * 19 17 16 35 35 H 1.08997 * 109.46942 * 61.21152 * 19 17 16 36 36 H 1.09002 * 109.47125 * 181.21467 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8976 1.0262 0.0000 4 6 2.0470 -0.7353 1.2419 5 7 1.6789 -2.1542 1.1570 6 6 1.9499 -2.8450 2.4248 7 6 1.0394 -2.2813 3.5175 8 6 1.3169 -2.9905 4.8180 9 1 2.0673 -3.7660 4.8607 10 6 0.6121 -2.6500 5.9529 11 7 -0.3021 -1.7060 5.9009 12 14 0.9566 -3.5286 7.5650 13 1 2.0184 -2.8028 8.3073 14 1 -0.2822 -3.5657 8.3831 15 1 1.4074 -4.9157 7.2863 16 6 2.3570 -2.8216 0.0387 17 6 1.8610 -2.2279 -1.2848 18 1 0.8066 -2.4670 -1.4234 19 6 2.6769 -2.8011 -2.4453 20 6 2.0407 -0.7253 -1.2273 21 8 2.5732 -0.1256 -2.1301 22 1 -0.3633 -1.0276 0.0104 23 1 -0.3633 0.5047 -0.8952 24 1 -0.3634 0.5229 0.8847 25 1 3.1319 -0.6435 1.2933 26 1 1.6021 -0.2971 2.1353 27 1 1.7576 -3.9113 2.3058 28 1 2.9921 -2.6930 2.7059 29 1 1.2318 -1.2150 3.6365 30 1 -0.0027 -2.4334 3.2363 31 1 -0.7983 -1.4667 6.6992 32 1 2.1357 -3.8886 0.0640 33 1 3.4332 -2.6711 0.1240 34 1 3.7316 -2.5688 -2.2976 35 1 2.5448 -3.8823 -2.4831 36 1 2.3356 -2.3603 -3.3820 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000829232924.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:47:57 Heat of formation + Delta-G solvation = -71.546047 kcal Electronic energy + Delta-G solvation = -15973.637700 eV Core-core repulsion = 13456.277503 eV Total energy + Delta-G solvation = -2517.360198 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.38256 -38.76398 -35.59106 -34.60885 -34.05281 -31.07440 -27.79307 -27.32159 -25.89082 -23.82847 -23.28615 -21.52259 -19.44447 -18.57354 -17.15980 -16.93499 -16.55013 -16.19457 -15.87694 -15.65857 -15.21326 -14.51876 -14.19807 -14.00778 -13.56373 -13.29915 -13.16599 -13.10703 -12.86003 -12.78903 -12.59760 -12.44528 -12.30294 -12.05460 -11.79495 -11.65226 -11.27909 -11.15386 -10.50859 -10.29933 -9.22469 -8.16698 -6.26800 0.87857 1.43133 1.43562 1.54522 2.42525 2.87131 3.07056 3.17489 3.70239 3.81534 3.84662 4.07736 4.23061 4.35665 4.45233 4.55789 4.64224 4.66314 4.70695 4.77117 4.88633 4.96279 5.01067 5.04168 5.08848 5.14643 5.26107 5.41547 5.50453 5.70974 5.80884 6.08428 6.24355 6.33107 6.45814 6.90806 7.42116 8.95038 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.048029 B = 0.005977 C = 0.005544 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 582.841262 B = 4683.442846 C = 5049.222382 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.132 4.132 3 H 0.097 0.903 4 C 0.064 3.936 5 N -0.544 5.544 6 C 0.080 3.920 7 C 0.035 3.965 8 C -0.543 4.543 9 H 0.059 0.941 10 C 0.004 3.996 11 N -0.930 5.930 12 Si 0.961 3.039 13 H -0.275 1.275 14 H -0.284 1.284 15 H -0.263 1.263 16 C 0.066 3.934 17 C -0.131 4.131 18 H 0.124 0.876 19 C -0.134 4.134 20 C 0.374 3.626 21 O -0.486 6.486 22 H 0.070 0.930 23 H 0.064 0.936 24 H 0.062 0.938 25 H 0.031 0.969 26 H 0.076 0.924 27 H 0.072 0.928 28 H 0.020 0.980 29 H -0.003 1.003 30 H -0.002 1.002 31 H 0.263 0.737 32 H 0.100 0.900 33 H 0.034 0.966 34 H 0.049 0.951 35 H 0.085 0.915 36 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.722 -1.247 -12.875 13.460 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.151 4.151 3 H 0.115 0.885 4 C -0.065 4.065 5 N -0.268 5.268 6 C -0.047 4.047 7 C -0.002 4.002 8 C -0.581 4.581 9 H 0.078 0.922 10 C -0.194 4.194 11 N -0.570 5.570 12 Si 0.786 3.214 13 H -0.201 1.201 14 H -0.209 1.209 15 H -0.187 1.187 16 C -0.062 4.062 17 C -0.150 4.150 18 H 0.142 0.858 19 C -0.191 4.191 20 C 0.252 3.748 21 O -0.362 6.362 22 H 0.089 0.911 23 H 0.083 0.917 24 H 0.081 0.919 25 H 0.050 0.950 26 H 0.095 0.905 27 H 0.090 0.910 28 H 0.038 0.962 29 H 0.015 0.985 30 H 0.016 0.984 31 H 0.071 0.929 32 H 0.118 0.882 33 H 0.052 0.948 34 H 0.068 0.932 35 H 0.104 0.896 36 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 3.392 -0.878 -13.336 13.788 hybrid contribution 0.794 -0.004 1.376 1.589 sum 4.186 -0.882 -11.959 12.701 Atomic orbital electron populations 1.21562 0.91055 1.03511 1.02221 1.22021 0.99570 0.99967 0.93553 0.88491 1.22111 0.97595 0.89055 0.97697 1.61755 1.58782 1.01881 1.04353 1.21975 0.96946 0.97931 0.87805 1.18945 0.94453 0.94924 0.91876 1.21643 1.20725 1.20417 0.95364 0.92246 1.25879 0.94807 0.95907 1.02827 1.70089 1.25023 1.31781 1.30119 0.85508 0.77582 0.79269 0.79040 1.20051 1.20925 1.18735 1.22182 0.95704 0.99877 0.88436 1.21954 1.04144 0.92358 0.96567 0.85803 1.21617 0.99119 1.02027 0.96360 1.25260 0.71948 0.92417 0.85202 1.90341 1.34598 1.71781 1.39435 0.91134 0.91686 0.91930 0.95033 0.90520 0.90960 0.96159 0.98492 0.98351 0.92862 0.88199 0.94791 0.93173 0.89617 0.91990 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.28 9.05 71.98 0.65 -2.63 16 2 C -0.13 -3.62 3.21 -11.21 -0.04 -3.66 16 3 H 0.10 2.55 8.14 -2.39 -0.02 2.53 16 4 C 0.06 2.04 4.76 86.42 0.41 2.45 16 5 N -0.54 -17.68 4.07 -895.37 -3.64 -21.32 16 6 C 0.08 3.15 4.90 86.30 0.42 3.57 16 7 C 0.04 1.79 4.90 29.85 0.15 1.93 16 8 C -0.54 -29.92 9.11 25.60 0.23 -29.69 16 9 H 0.06 3.13 7.74 -2.91 -0.02 3.11 16 10 C 0.00 0.22 5.46 84.65 0.46 0.68 16 11 N -0.93 -55.43 13.29 21.44 0.28 -55.14 16 12 Si 0.96 43.34 29.54 68.60 2.03 45.37 16 13 H -0.27 -12.05 7.11 99.48 0.71 -11.35 16 14 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 15 H -0.26 -11.31 7.11 99.48 0.71 -10.60 16 16 C 0.07 1.68 4.80 86.42 0.42 2.09 16 17 C -0.13 -3.00 2.94 -11.20 -0.03 -3.03 16 18 H 0.12 2.59 7.94 -2.39 -0.02 2.57 16 19 C -0.13 -2.58 8.65 71.98 0.62 -1.96 16 20 C 0.37 10.24 5.97 29.57 0.18 10.42 16 21 O -0.49 -15.51 16.91 -1.45 -0.02 -15.53 16 22 H 0.07 1.92 7.42 -2.39 -0.02 1.90 16 23 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 24 H 0.06 1.71 8.14 -2.38 -0.02 1.69 16 25 H 0.03 0.99 8.10 -2.39 -0.02 0.97 16 26 H 0.08 2.84 6.06 -2.38 -0.01 2.82 16 27 H 0.07 2.71 7.93 -2.39 -0.02 2.69 16 28 H 0.02 0.79 8.13 -2.38 -0.02 0.77 16 29 H 0.00 -0.17 6.35 -2.39 -0.02 -0.19 16 30 H 0.00 -0.11 8.14 -2.39 -0.02 -0.13 16 31 H 0.26 14.75 8.31 -92.71 -0.77 13.98 16 32 H 0.10 2.26 7.94 -2.38 -0.02 2.24 16 33 H 0.03 0.87 8.10 -2.39 -0.02 0.85 16 34 H 0.05 1.03 8.14 -2.38 -0.02 1.01 16 35 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 36 H 0.06 1.22 8.03 -2.39 -0.02 1.20 16 Total: -1.00 -62.71 289.78 3.15 -59.56 By element: Atomic # 1 Polarization: 5.86 SS G_CDS: 1.03 Total: 6.89 kcal Atomic # 6 Polarization: -23.29 SS G_CDS: 3.47 Total: -19.82 kcal Atomic # 7 Polarization: -73.11 SS G_CDS: -3.36 Total: -76.47 kcal Atomic # 8 Polarization: -15.51 SS G_CDS: -0.02 Total: -15.53 kcal Atomic # 14 Polarization: 43.34 SS G_CDS: 2.03 Total: 45.37 kcal Total: -62.71 3.15 -59.56 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000829232924.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.986 kcal (2) G-P(sol) polarization free energy of solvation -62.706 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.691 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.145 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.560 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.546 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds