Wall clock time and date at job start Mon Mar 30 2020 02:42:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08999 * 109.60434 * 2 1 4 4 C 1.53353 * 109.60197 * 239.51446 * 2 1 3 5 5 C 1.53063 * 108.42493 * 172.71577 * 4 2 1 6 6 H 1.09002 * 109.39616 * 169.03434 * 5 4 2 7 7 C 1.52999 * 109.39817 * 288.85321 * 5 4 2 8 8 C 1.50155 * 109.95230 * 48.68960 * 5 4 2 9 9 O 1.21284 * 118.23212 * 162.62472 * 8 5 4 10 10 N 1.33354 * 123.52002 * 342.90484 * 8 5 4 11 11 C 1.46499 * 117.94707 * 181.94416 * 10 8 5 12 12 C 1.52992 * 109.47267 * 269.73594 * 11 10 8 13 13 C 1.50700 * 109.47257 * 179.97438 * 12 11 10 14 14 H 1.07999 * 119.99988 * 359.97438 * 13 12 11 15 15 C 1.37885 * 120.00047 * 180.02562 * 13 12 11 16 16 N 1.31518 * 119.99792 * 359.72305 * 15 13 12 17 17 Si 1.86795 * 120.00009 * 180.02562 * 15 13 12 18 18 H 1.48503 * 109.47163 * 59.99902 * 17 15 13 19 19 H 1.48495 * 109.47159 * 179.97438 * 17 15 13 20 20 H 1.48505 * 109.47290 * 299.99897 * 17 15 13 21 21 C 1.45761 * 124.10386 * 1.66248 * 10 8 5 22 22 H 1.09006 * 109.46802 * 299.67395 * 1 2 3 23 23 H 1.08999 * 109.47228 * 59.66595 * 1 2 3 24 24 H 1.08993 * 109.47592 * 179.67219 * 1 2 3 25 25 H 1.09003 * 109.66845 * 292.44975 * 4 2 1 26 26 H 1.08996 * 109.67121 * 52.94037 * 4 2 1 27 27 H 1.09000 * 109.47002 * 60.00849 * 7 5 4 28 28 H 1.09007 * 109.46814 * 180.02562 * 7 5 4 29 29 H 1.08998 * 109.47795 * 300.00019 * 7 5 4 30 30 H 1.09004 * 109.47024 * 149.73310 * 11 10 8 31 31 H 1.09005 * 109.47136 * 29.73694 * 11 10 8 32 32 H 1.09004 * 109.47330 * 59.99904 * 12 11 10 33 33 H 1.08997 * 109.47279 * 300.00390 * 12 11 10 34 34 H 0.97000 * 119.99468 * 179.97438 * 16 15 13 35 35 H 1.09004 * 109.29445 * 101.52171 * 21 10 8 36 36 H 1.08997 * 109.29436 * 221.10050 * 21 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8957 1.0268 0.0000 4 6 2.0444 -0.7329 -1.2449 5 6 3.5637 -0.5603 -1.3146 6 1 3.9695 -1.2288 -2.0739 7 6 3.8943 0.8874 -1.6831 8 6 4.1775 -0.8815 0.0175 9 8 5.3683 -1.1079 0.0609 10 7 3.4828 -0.9364 1.1545 11 6 4.2133 -1.2186 2.3926 12 6 4.2507 -2.7296 2.6296 13 6 5.0027 -3.0199 3.9029 14 1 5.4134 -2.2079 4.4846 15 6 5.1674 -4.3223 4.3246 16 7 4.6635 -5.3108 3.6186 17 14 6.0990 -4.6821 5.9033 18 1 5.4157 -4.0195 7.0432 19 1 6.1353 -6.1486 6.1333 20 1 7.4860 -4.1640 5.7886 21 6 2.0430 -0.7275 1.2433 22 1 -0.3633 0.5088 0.8930 23 1 -0.3633 0.5190 -0.8870 24 1 -0.3634 -1.0275 -0.0059 25 1 1.7983 -1.7925 -1.1748 26 1 1.5848 -0.3077 -2.1371 27 1 3.4863 1.5572 -0.9262 28 1 4.9761 1.0115 -1.7335 29 1 3.4562 1.1248 -2.6526 30 1 3.7121 -0.7318 3.2292 31 1 5.2316 -0.8388 2.3082 32 1 4.7519 -3.2164 1.7930 33 1 3.2325 -3.1094 2.7139 34 1 4.7797 -6.2270 3.9151 35 1 1.5435 -1.6926 1.3279 36 1 1.8199 -0.1278 2.1257 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000885704119.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:42:19 Heat of formation + Delta-G solvation = -61.260350 kcal Electronic energy + Delta-G solvation = -16073.034824 eV Core-core repulsion = 13556.120648 eV Total energy + Delta-G solvation = -2516.914176 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.28309 -36.64749 -35.08873 -32.89237 -32.15457 -29.63330 -26.82329 -26.16277 -24.92172 -22.83577 -21.61563 -20.41560 -17.76646 -16.53669 -16.24819 -15.60071 -15.32246 -14.55941 -14.17250 -14.02793 -13.59497 -13.18481 -12.75546 -12.50185 -12.29469 -12.20755 -12.03931 -11.83418 -11.32020 -11.24016 -11.03317 -10.85206 -10.67405 -10.62657 -10.39183 -9.80249 -9.76735 -9.27979 -8.91777 -8.30733 -7.93996 -5.96410 -3.99129 3.20612 3.36514 3.40317 3.42912 3.59236 4.50047 4.61371 4.70080 4.70869 4.88566 5.24543 5.36305 5.39575 5.46159 5.52174 5.56798 5.65209 5.74787 5.84348 5.88010 5.96848 5.98600 6.08175 6.16248 6.24887 6.36383 6.61638 6.93220 6.99863 7.68666 7.80983 8.05271 8.13854 8.42361 8.78609 9.07610 9.64121 11.15189 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.039481 B = 0.006540 C = 0.006057 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 709.024799 B = 4280.089108 C = 4621.464415 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.110 4.110 3 H 0.079 0.921 4 C -0.114 4.114 5 C -0.106 4.106 6 H 0.100 0.900 7 C -0.137 4.137 8 C 0.512 3.488 9 O -0.551 6.551 10 N -0.598 5.598 11 C 0.111 3.889 12 C 0.016 3.984 13 C -0.520 4.520 14 H 0.055 0.945 15 C 0.058 3.942 16 N -0.895 5.895 17 Si 0.895 3.105 18 H -0.277 1.277 19 H -0.287 1.287 20 H -0.276 1.276 21 C 0.118 3.882 22 H 0.058 0.942 23 H 0.057 0.943 24 H 0.059 0.941 25 H 0.071 0.929 26 H 0.072 0.928 27 H 0.057 0.943 28 H 0.063 0.937 29 H 0.063 0.937 30 H 0.061 0.939 31 H 0.074 0.926 32 H 0.021 0.979 33 H 0.014 0.986 34 H 0.261 0.739 35 H 0.066 0.934 36 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.223 11.682 -9.115 17.453 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.129 4.129 3 H 0.097 0.903 4 C -0.151 4.151 5 C -0.128 4.128 6 H 0.118 0.882 7 C -0.194 4.194 8 C 0.300 3.700 9 O -0.429 6.429 10 N -0.329 5.329 11 C -0.010 4.010 12 C -0.022 4.022 13 C -0.559 4.559 14 H 0.074 0.926 15 C -0.143 4.143 16 N -0.534 5.534 17 Si 0.722 3.278 18 H -0.202 1.202 19 H -0.213 1.213 20 H -0.202 1.202 21 C -0.005 4.005 22 H 0.077 0.923 23 H 0.076 0.924 24 H 0.078 0.922 25 H 0.090 0.910 26 H 0.091 0.909 27 H 0.076 0.924 28 H 0.082 0.918 29 H 0.082 0.918 30 H 0.079 0.921 31 H 0.092 0.908 32 H 0.040 0.960 33 H 0.032 0.968 34 H 0.070 0.930 35 H 0.084 0.916 36 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -8.631 11.372 -9.093 16.926 hybrid contribution 0.385 -0.411 0.915 1.075 sum -8.246 10.961 -8.178 15.969 Atomic orbital electron populations 1.21731 0.94003 1.02352 1.01887 1.21509 0.96347 1.00083 0.94916 0.90303 1.21791 0.94000 1.01395 0.97955 1.21242 0.96262 0.99538 0.95714 0.88211 1.21721 1.02424 0.93978 1.01297 1.19885 0.87178 0.77488 0.85497 1.90713 1.15839 1.49676 1.86656 1.47479 1.07772 1.69010 1.08685 1.21915 0.96188 1.00495 0.82426 1.19328 0.97096 0.88702 0.97102 1.21082 1.35048 0.92245 1.07486 0.92627 1.25002 0.95772 0.96323 0.97228 1.69971 1.45410 0.99199 1.38786 0.86619 0.80520 0.77046 0.83576 1.20240 1.21288 1.20163 1.21415 0.81017 1.00305 0.97771 0.92337 0.92351 0.92194 0.91007 0.90907 0.92381 0.91820 0.91836 0.92095 0.90808 0.96012 0.96762 0.92967 0.91567 0.91030 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.21 9.19 37.16 0.34 -0.87 16 2 C -0.11 -1.20 2.75 -90.48 -0.25 -1.44 16 3 H 0.08 0.83 6.46 -51.93 -0.34 0.49 16 4 C -0.11 -1.27 4.76 -26.52 -0.13 -1.40 16 5 C -0.11 -1.48 3.04 -92.00 -0.28 -1.76 16 6 H 0.10 1.37 8.14 -51.93 -0.42 0.95 16 7 C -0.14 -1.57 8.97 37.16 0.33 -1.23 16 8 C 0.51 9.89 6.69 -11.88 -0.08 9.81 16 9 O -0.55 -13.23 16.21 5.55 0.09 -13.14 16 10 N -0.60 -11.28 2.81 -174.97 -0.49 -11.77 16 11 C 0.11 2.48 5.14 -4.05 -0.02 2.45 16 12 C 0.02 0.43 5.29 -27.89 -0.15 0.28 16 13 C -0.52 -15.27 9.11 -34.44 -0.31 -15.58 16 14 H 0.06 1.57 7.74 -52.49 -0.41 1.16 16 15 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 16 N -0.89 -27.76 13.29 55.43 0.74 -27.03 16 17 Si 0.89 22.23 29.54 -169.99 -5.02 17.21 16 18 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 19 H -0.29 -7.04 7.11 56.52 0.40 -6.63 16 20 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 21 C 0.12 1.70 5.69 -4.49 -0.03 1.68 16 22 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 23 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 24 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 25 H 0.07 0.86 8.13 -51.93 -0.42 0.44 16 26 H 0.07 0.64 8.10 -51.93 -0.42 0.22 16 27 H 0.06 0.64 6.58 -51.93 -0.34 0.30 16 28 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 29 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.06 1.24 7.86 -51.93 -0.41 0.83 16 31 H 0.07 1.77 7.20 -51.93 -0.37 1.40 16 32 H 0.02 0.67 8.14 -51.93 -0.42 0.24 16 33 H 0.01 0.40 8.14 -51.93 -0.42 -0.02 16 34 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 35 H 0.07 1.00 8.11 -51.93 -0.42 0.58 16 36 H 0.07 0.94 7.92 -51.93 -0.41 0.53 16 LS Contribution 290.81 15.07 4.38 4.38 Total: -1.00 -33.98 290.81 -7.03 -41.01 By element: Atomic # 1 Polarization: 1.82 SS G_CDS: -6.06 Total: -4.24 kcal Atomic # 6 Polarization: -5.77 SS G_CDS: -0.66 Total: -6.44 kcal Atomic # 7 Polarization: -39.04 SS G_CDS: 0.24 Total: -38.80 kcal Atomic # 8 Polarization: -13.23 SS G_CDS: 0.09 Total: -13.14 kcal Atomic # 14 Polarization: 22.23 SS G_CDS: -5.02 Total: 17.21 kcal Total LS contribution 4.38 Total: 4.38 kcal Total: -33.98 -7.03 -41.01 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885704119.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.252 kcal (2) G-P(sol) polarization free energy of solvation -33.983 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.235 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.025 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.008 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.260 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds