Wall clock time and date at job start Mon Mar 30 2020 02:42:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08999 * 109.60434 * 2 1 4 4 C 1.53353 * 109.60197 * 239.51446 * 2 1 3 5 5 C 1.53063 * 108.42493 * 172.71577 * 4 2 1 6 6 H 1.09002 * 109.39616 * 169.03434 * 5 4 2 7 7 C 1.52999 * 109.39817 * 288.85321 * 5 4 2 8 8 C 1.50155 * 109.95230 * 48.68960 * 5 4 2 9 9 O 1.21284 * 118.23212 * 162.62472 * 8 5 4 10 10 N 1.33354 * 123.52002 * 342.90484 * 8 5 4 11 11 C 1.46499 * 117.94707 * 181.94416 * 10 8 5 12 12 C 1.52992 * 109.47267 * 269.73594 * 11 10 8 13 13 C 1.50700 * 109.47257 * 179.97438 * 12 11 10 14 14 H 1.07999 * 119.99988 * 359.97438 * 13 12 11 15 15 C 1.37885 * 120.00047 * 180.02562 * 13 12 11 16 16 N 1.31518 * 119.99792 * 359.72305 * 15 13 12 17 17 Si 1.86795 * 120.00009 * 180.02562 * 15 13 12 18 18 H 1.48503 * 109.47163 * 59.99902 * 17 15 13 19 19 H 1.48495 * 109.47159 * 179.97438 * 17 15 13 20 20 H 1.48505 * 109.47290 * 299.99897 * 17 15 13 21 21 C 1.45761 * 124.10386 * 1.66248 * 10 8 5 22 22 H 1.09006 * 109.46802 * 299.67395 * 1 2 3 23 23 H 1.08999 * 109.47228 * 59.66595 * 1 2 3 24 24 H 1.08993 * 109.47592 * 179.67219 * 1 2 3 25 25 H 1.09003 * 109.66845 * 292.44975 * 4 2 1 26 26 H 1.08996 * 109.67121 * 52.94037 * 4 2 1 27 27 H 1.09000 * 109.47002 * 60.00849 * 7 5 4 28 28 H 1.09007 * 109.46814 * 180.02562 * 7 5 4 29 29 H 1.08998 * 109.47795 * 300.00019 * 7 5 4 30 30 H 1.09004 * 109.47024 * 149.73310 * 11 10 8 31 31 H 1.09005 * 109.47136 * 29.73694 * 11 10 8 32 32 H 1.09004 * 109.47330 * 59.99904 * 12 11 10 33 33 H 1.08997 * 109.47279 * 300.00390 * 12 11 10 34 34 H 0.97000 * 119.99468 * 179.97438 * 16 15 13 35 35 H 1.09004 * 109.29445 * 101.52171 * 21 10 8 36 36 H 1.08997 * 109.29436 * 221.10050 * 21 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8957 1.0268 0.0000 4 6 2.0444 -0.7329 -1.2449 5 6 3.5637 -0.5603 -1.3146 6 1 3.9695 -1.2288 -2.0739 7 6 3.8943 0.8874 -1.6831 8 6 4.1775 -0.8815 0.0175 9 8 5.3683 -1.1079 0.0609 10 7 3.4828 -0.9364 1.1545 11 6 4.2133 -1.2186 2.3926 12 6 4.2507 -2.7296 2.6296 13 6 5.0027 -3.0199 3.9029 14 1 5.4134 -2.2079 4.4846 15 6 5.1674 -4.3223 4.3246 16 7 4.6635 -5.3108 3.6186 17 14 6.0990 -4.6821 5.9033 18 1 5.4157 -4.0195 7.0432 19 1 6.1353 -6.1486 6.1333 20 1 7.4860 -4.1640 5.7886 21 6 2.0430 -0.7275 1.2433 22 1 -0.3633 0.5088 0.8930 23 1 -0.3633 0.5190 -0.8870 24 1 -0.3634 -1.0275 -0.0059 25 1 1.7983 -1.7925 -1.1748 26 1 1.5848 -0.3077 -2.1371 27 1 3.4863 1.5572 -0.9262 28 1 4.9761 1.0115 -1.7335 29 1 3.4562 1.1248 -2.6526 30 1 3.7121 -0.7318 3.2292 31 1 5.2316 -0.8388 2.3082 32 1 4.7519 -3.2164 1.7930 33 1 3.2325 -3.1094 2.7139 34 1 4.7797 -6.2270 3.9151 35 1 1.5435 -1.6926 1.3279 36 1 1.8199 -0.1278 2.1257 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000885704119.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:42:19 Heat of formation + Delta-G solvation = -83.408095 kcal Electronic energy + Delta-G solvation = -16073.995223 eV Core-core repulsion = 13556.120648 eV Total energy + Delta-G solvation = -2517.874575 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.68754 -37.96606 -36.70822 -34.94400 -33.28072 -31.61406 -27.76526 -27.48272 -26.68101 -24.30647 -23.08394 -21.91043 -19.02887 -18.69174 -17.61661 -17.16537 -16.78212 -16.36571 -15.55762 -15.22934 -14.80047 -14.67594 -14.30686 -14.24083 -13.60782 -13.33904 -13.19133 -13.01269 -12.83854 -12.79462 -12.60159 -12.32504 -12.10383 -11.91183 -11.72426 -11.55351 -11.45584 -11.28965 -10.60849 -10.52037 -9.59740 -8.24941 -6.38106 1.37053 1.42116 1.49708 1.69019 2.13001 2.40274 3.08044 3.52630 3.73172 3.76882 3.85180 4.24914 4.32727 4.42758 4.48841 4.61603 4.62638 4.66071 4.78624 4.88674 4.93084 4.94948 5.00392 5.06483 5.15195 5.23544 5.29328 5.40850 5.45557 5.52270 5.57712 5.79197 6.14758 6.61334 6.77120 7.26276 7.31587 8.87396 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.039481 B = 0.006540 C = 0.006057 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 709.024799 B = 4280.089108 C = 4621.464415 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.100 4.100 3 H 0.092 0.908 4 C -0.109 4.109 5 C -0.101 4.101 6 H 0.097 0.903 7 C -0.130 4.130 8 C 0.499 3.501 9 O -0.611 6.611 10 N -0.600 5.600 11 C 0.124 3.876 12 C 0.029 3.971 13 C -0.547 4.547 14 H 0.065 0.935 15 C -0.001 4.001 16 N -0.934 5.934 17 Si 0.973 3.027 18 H -0.259 1.259 19 H -0.281 1.281 20 H -0.270 1.270 21 C 0.108 3.892 22 H 0.065 0.935 23 H 0.081 0.919 24 H 0.054 0.946 25 H 0.058 0.942 26 H 0.112 0.888 27 H 0.065 0.935 28 H 0.043 0.957 29 H 0.100 0.900 30 H 0.086 0.914 31 H 0.052 0.948 32 H -0.029 1.029 33 H -0.003 1.003 34 H 0.265 0.735 35 H 0.054 0.946 36 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.744 13.345 -9.094 19.397 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.119 4.119 3 H 0.110 0.890 4 C -0.146 4.146 5 C -0.122 4.122 6 H 0.115 0.885 7 C -0.188 4.188 8 C 0.289 3.711 9 O -0.494 6.494 10 N -0.329 5.329 11 C 0.001 3.999 12 C -0.009 4.009 13 C -0.585 4.585 14 H 0.083 0.917 15 C -0.199 4.199 16 N -0.574 5.574 17 Si 0.796 3.204 18 H -0.183 1.183 19 H -0.206 1.206 20 H -0.195 1.195 21 C -0.014 4.014 22 H 0.084 0.916 23 H 0.100 0.900 24 H 0.073 0.927 25 H 0.077 0.923 26 H 0.130 0.870 27 H 0.084 0.916 28 H 0.062 0.938 29 H 0.119 0.881 30 H 0.104 0.896 31 H 0.070 0.930 32 H -0.010 1.010 33 H 0.015 0.985 34 H 0.073 0.927 35 H 0.073 0.927 36 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -10.205 13.061 -9.079 18.899 hybrid contribution 0.846 -0.965 0.884 1.559 sum -9.359 12.096 -8.195 17.351 Atomic orbital electron populations 1.21707 0.91646 1.02590 1.03457 1.21511 0.98034 0.99876 0.92468 0.89006 1.21830 0.91742 1.01162 0.99900 1.21302 0.98016 1.01218 0.91690 0.88461 1.21724 1.01560 0.91978 1.03493 1.21073 0.86673 0.76011 0.87341 1.90674 1.18659 1.52335 1.87686 1.47588 1.09605 1.68274 1.07458 1.21484 0.96248 0.96917 0.85209 1.19117 0.95082 0.91815 0.94890 1.21540 1.35643 0.93064 1.08294 0.91706 1.26064 0.96564 0.95970 1.01287 1.70120 1.46612 0.99767 1.40894 0.85388 0.78973 0.77178 0.78821 1.18291 1.20591 1.19529 1.21779 0.78010 1.00693 1.00927 0.91555 0.90029 0.92667 0.92276 0.86963 0.91587 0.93751 0.88102 0.89576 0.92977 1.01043 0.98451 0.92654 0.92718 0.89436 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.82 9.19 71.98 0.66 -1.16 16 2 C -0.10 -1.89 2.75 -10.71 -0.03 -1.92 16 3 H 0.09 1.56 6.46 -2.39 -0.02 1.55 16 4 C -0.11 -2.15 4.76 30.73 0.15 -2.00 16 5 C -0.10 -2.71 3.04 -11.69 -0.04 -2.74 16 6 H 0.10 2.65 8.14 -2.39 -0.02 2.63 16 7 C -0.13 -2.68 8.97 71.98 0.65 -2.04 16 8 C 0.50 19.86 6.69 87.71 0.59 20.45 16 9 O -0.61 -31.13 16.21 -3.04 -0.05 -31.18 16 10 N -0.60 -23.08 2.81 -826.67 -2.32 -25.40 16 11 C 0.12 5.75 5.14 86.38 0.44 6.19 16 12 C 0.03 1.67 5.29 29.85 0.16 1.83 16 13 C -0.55 -32.99 9.11 25.60 0.23 -32.76 16 14 H 0.06 3.69 7.74 -2.91 -0.02 3.67 16 15 C 0.00 -0.06 5.46 84.66 0.46 0.40 16 16 N -0.93 -59.57 13.29 21.45 0.28 -59.29 16 17 Si 0.97 45.87 29.54 68.60 2.03 47.90 16 18 H -0.26 -11.39 7.11 99.48 0.71 -10.68 16 19 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 20 H -0.27 -12.42 7.11 99.48 0.71 -11.71 16 21 C 0.11 3.00 5.69 86.49 0.49 3.50 16 22 H 0.07 0.81 8.14 -2.38 -0.02 0.79 16 23 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16 24 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 25 H 0.06 1.33 8.13 -2.39 -0.02 1.31 16 26 H 0.11 1.42 8.10 -2.39 -0.02 1.40 16 27 H 0.07 1.26 6.58 -2.39 -0.02 1.24 16 28 H 0.04 1.09 8.14 -2.38 -0.02 1.07 16 29 H 0.10 1.36 8.14 -2.39 -0.02 1.34 16 30 H 0.09 3.51 7.86 -2.38 -0.02 3.49 16 31 H 0.05 2.62 7.20 -2.38 -0.02 2.61 16 32 H -0.03 -1.93 8.14 -2.38 -0.02 -1.95 16 33 H 0.00 -0.17 8.14 -2.39 -0.02 -0.19 16 34 H 0.26 15.77 8.31 -92.71 -0.77 15.00 16 35 H 0.05 1.65 8.11 -2.38 -0.02 1.63 16 36 H 0.09 2.15 7.92 -2.39 -0.02 2.13 16 Total: -1.00 -78.24 290.81 4.73 -73.51 By element: Atomic # 1 Polarization: 3.68 SS G_CDS: 1.03 Total: 4.71 kcal Atomic # 6 Polarization: -14.01 SS G_CDS: 3.77 Total: -10.25 kcal Atomic # 7 Polarization: -82.65 SS G_CDS: -2.04 Total: -84.69 kcal Atomic # 8 Polarization: -31.13 SS G_CDS: -0.05 Total: -31.18 kcal Atomic # 14 Polarization: 45.87 SS G_CDS: 2.03 Total: 47.90 kcal Total: -78.24 4.73 -73.51 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885704119.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.897 kcal (2) G-P(sol) polarization free energy of solvation -78.242 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.139 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.731 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.511 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.408 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds