Wall clock time and date at job start Mon Mar 30 2020 03:04:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09007 * 109.47099 * 2 1 4 4 C 1.50703 * 109.47682 * 119.99858 * 2 1 3 5 5 H 1.07993 * 119.99982 * 114.44339 * 4 2 1 6 6 C 1.37873 * 119.99820 * 294.45634 * 4 2 1 7 7 N 1.31516 * 120.00204 * 179.97438 * 6 4 2 8 8 Si 1.86803 * 120.00068 * 359.97438 * 6 4 2 9 9 H 1.48490 * 109.47344 * 90.00448 * 8 6 4 10 10 H 1.48502 * 109.47246 * 330.00164 * 8 6 4 11 11 H 1.48507 * 109.47093 * 210.00475 * 8 6 4 12 12 N 1.46896 * 109.47343 * 239.99923 * 2 1 3 13 13 C 1.47983 * 111.00399 * 179.50028 * 12 2 1 14 14 C 1.54210 * 107.03162 * 214.34163 * 13 12 2 15 15 C 1.53630 * 104.89971 * 1.79890 * 14 13 12 16 16 C 1.53177 * 111.01075 * 140.23509 * 15 14 13 17 17 C 1.55057 * 103.75428 * 124.28609 * 16 15 14 18 18 C 1.55072 * 102.12569 * 20.83403 * 17 16 15 19 19 O 1.42671 * 111.40949 * 261.22223 * 15 14 13 20 20 C 1.48713 * 111.00028 * 61.94359 * 12 2 1 21 21 H 1.09000 * 109.47402 * 299.99860 * 1 2 3 22 22 H 1.08996 * 109.47299 * 60.00028 * 1 2 3 23 23 H 1.09007 * 109.47099 * 180.02562 * 1 2 3 24 24 H 0.96999 * 120.00151 * 179.97438 * 7 6 4 25 25 H 1.08996 * 109.92064 * 333.69206 * 13 12 2 26 26 H 1.09009 * 109.91941 * 94.79486 * 13 12 2 27 27 H 1.08997 * 110.35302 * 120.65165 * 14 13 12 28 28 H 1.08992 * 110.35629 * 242.83171 * 14 13 12 29 29 H 1.09008 * 110.56533 * 242.84873 * 16 15 14 30 30 H 1.09001 * 110.56939 * 5.56579 * 16 15 14 31 31 H 1.09004 * 110.87406 * 138.99720 * 17 16 15 32 32 H 1.09000 * 110.87068 * 262.67798 * 17 16 15 33 33 H 1.09000 * 110.58528 * 82.12343 * 18 17 16 34 34 H 1.08999 * 110.58372 * 204.88339 * 18 17 16 35 35 H 1.09000 * 110.67393 * 277.18708 * 20 12 2 36 36 H 1.09006 * 110.67595 * 40.34403 * 20 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 1.2305 5 1 2.5773 -1.6377 1.1339 6 6 1.7962 -0.1764 2.4795 7 7 2.2342 -0.7965 3.5533 8 14 0.8540 1.4279 2.6464 9 1 -0.5974 1.1392 2.7687 10 1 1.0919 2.2690 1.4459 11 1 1.3186 2.1511 3.8575 12 7 2.0196 -0.6925 -1.1994 13 6 3.4989 -0.7018 -1.2396 14 6 3.9111 -0.5974 -2.7220 15 6 2.5871 -0.4836 -3.4930 16 6 2.7051 0.5234 -4.6412 17 6 2.2910 -0.2937 -5.8922 18 6 1.4853 -1.4616 -5.2664 19 8 2.1903 -1.7422 -4.0351 20 6 1.5817 0.0085 -2.4357 21 1 -0.3634 0.5138 0.8900 22 1 -0.3634 0.5138 -0.8899 23 1 -0.3634 -1.0277 0.0005 24 1 2.0684 -0.4207 4.4320 25 1 3.8909 0.1501 -0.6842 26 1 3.8762 -1.6302 -0.8106 27 1 4.5217 0.2908 -2.8840 28 1 4.4545 -1.4911 -3.0283 29 1 2.0239 1.3605 -4.4879 30 1 3.7314 0.8785 -4.7353 31 1 1.6618 0.3015 -6.5541 32 1 3.1685 -0.6665 -6.4205 33 1 0.4607 -1.1526 -5.0594 34 1 1.4969 -2.3308 -5.9240 35 1 0.5665 -0.2836 -2.7045 36 1 1.6522 1.0891 -2.3109 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000885707490.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:04:12 Heat of formation + Delta-G solvation = -35.114887 kcal Electronic energy + Delta-G solvation = -16466.252372 eV Core-core repulsion = 13950.471948 eV Total energy + Delta-G solvation = -2515.780424 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.09696 -37.05380 -33.48248 -32.07213 -31.41410 -28.82603 -28.25218 -25.44640 -24.29887 -21.71140 -21.49149 -19.77242 -19.34528 -16.71467 -16.19667 -16.03406 -14.93600 -14.65077 -14.09409 -13.86527 -13.73026 -13.10483 -12.55960 -12.42463 -12.15573 -12.05091 -11.74144 -11.61625 -11.38467 -11.05368 -10.87266 -10.71039 -10.42252 -10.33425 -10.24817 -10.04832 -9.57132 -9.31531 -9.00598 -8.54398 -7.34588 -6.03846 -4.02041 3.27581 3.36506 3.38083 3.98985 4.41810 4.56297 4.67680 4.83750 4.95401 5.13704 5.25027 5.29854 5.34438 5.55308 5.65148 5.73419 5.75786 5.85482 5.94046 6.07672 6.09016 6.17733 6.29849 6.37898 6.52829 6.57919 6.62828 6.81888 6.86039 7.20490 7.32571 7.61593 7.95482 8.05930 8.68971 9.05221 9.58534 11.09284 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.048886 B = 0.007466 C = 0.007144 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 572.624200 B = 3749.534023 C = 3918.198627 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.171 3.829 3 H -0.001 1.001 4 C -0.502 4.502 5 H 0.082 0.918 6 C 0.070 3.930 7 N -0.900 5.900 8 Si 0.879 3.121 9 H -0.277 1.277 10 H -0.268 1.268 11 H -0.294 1.294 12 N -0.495 5.495 13 C 0.055 3.945 14 C -0.127 4.127 15 C 0.102 3.898 16 C -0.144 4.144 17 C -0.155 4.155 18 C 0.042 3.958 19 O -0.345 6.345 20 C 0.023 3.977 21 H 0.041 0.959 22 H 0.024 0.976 23 H 0.060 0.940 24 H 0.263 0.737 25 H 0.045 0.955 26 H 0.077 0.923 27 H 0.071 0.929 28 H 0.077 0.923 29 H 0.076 0.924 30 H 0.077 0.923 31 H 0.076 0.924 32 H 0.074 0.926 33 H 0.058 0.942 34 H 0.088 0.912 35 H 0.076 0.924 36 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.084 3.697 -17.161 17.554 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.063 3.937 3 H 0.017 0.983 4 C -0.540 4.540 5 H 0.100 0.900 6 C -0.132 4.132 7 N -0.539 5.539 8 Si 0.709 3.291 9 H -0.204 1.204 10 H -0.193 1.193 11 H -0.221 1.221 12 N -0.219 5.219 13 C -0.073 4.073 14 C -0.165 4.165 15 C 0.062 3.938 16 C -0.182 4.182 17 C -0.192 4.192 18 C -0.035 4.035 19 O -0.264 6.264 20 C -0.106 4.106 21 H 0.060 0.940 22 H 0.043 0.957 23 H 0.079 0.921 24 H 0.073 0.927 25 H 0.063 0.937 26 H 0.095 0.905 27 H 0.090 0.910 28 H 0.096 0.904 29 H 0.094 0.906 30 H 0.096 0.904 31 H 0.094 0.906 32 H 0.093 0.907 33 H 0.076 0.924 34 H 0.106 0.894 35 H 0.095 0.905 36 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -0.072 2.966 -16.803 17.063 hybrid contribution -0.384 1.940 0.213 1.989 sum -0.457 4.906 -16.590 17.306 Atomic orbital electron populations 1.22096 0.98436 1.01289 0.98087 1.19942 0.91774 0.92504 0.89439 0.98310 1.20957 1.35443 1.09534 0.88072 0.90046 1.24917 0.95515 0.96902 0.95822 1.69887 1.46654 1.39349 0.97962 0.86942 0.80313 0.84625 0.77221 1.20367 1.19334 1.22142 1.64740 1.07216 1.49031 1.00943 1.22637 0.89458 1.01983 0.93202 1.22582 0.95446 1.02211 0.96234 1.22258 0.94967 0.83835 0.92777 1.22930 1.02689 0.98537 0.94042 1.23171 1.00701 0.97548 0.97814 1.23589 0.95748 0.97786 0.86356 1.88880 1.74014 1.26661 1.36839 1.23553 0.99009 0.96042 0.91987 0.93998 0.95672 0.92119 0.92685 0.93658 0.90499 0.91041 0.90450 0.90560 0.90383 0.90575 0.90722 0.92357 0.89376 0.90544 0.94067 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.23 8.68 37.15 0.32 -2.90 16 2 C 0.17 4.21 1.31 -68.87 -0.09 4.12 16 3 H 0.00 -0.01 6.67 -51.92 -0.35 -0.36 16 4 C -0.50 -14.42 8.53 -34.44 -0.29 -14.71 16 5 H 0.08 2.57 7.71 -52.49 -0.40 2.16 16 6 C 0.07 2.04 5.45 -17.82 -0.10 1.95 16 7 N -0.90 -27.84 13.96 55.43 0.77 -27.07 16 8 Si 0.88 22.11 24.67 -169.99 -4.19 17.92 16 9 H -0.28 -6.80 6.88 56.52 0.39 -6.41 16 10 H -0.27 -6.50 6.38 56.52 0.36 -6.13 16 11 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 12 N -0.50 -10.92 5.10 -224.13 -1.14 -12.07 16 13 C 0.06 1.12 5.77 -2.59 -0.01 1.10 16 14 C -0.13 -2.02 6.24 -25.77 -0.16 -2.18 16 15 C 0.10 1.59 1.05 -89.69 -0.09 1.49 16 16 C -0.14 -1.69 6.26 -25.55 -0.16 -1.85 16 17 C -0.15 -1.54 7.17 -24.55 -0.18 -1.72 16 18 C 0.04 0.50 7.73 38.25 0.30 0.80 16 19 O -0.35 -5.70 10.93 -35.23 -0.39 -6.08 16 20 C 0.02 0.41 4.50 -2.31 -0.01 0.40 16 21 H 0.04 0.98 4.02 -51.93 -0.21 0.77 16 22 H 0.02 0.49 7.01 -51.93 -0.36 0.13 16 23 H 0.06 1.40 8.14 -51.92 -0.42 0.98 16 24 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 25 H 0.05 0.95 7.71 -51.93 -0.40 0.55 16 26 H 0.08 1.65 8.00 -51.92 -0.42 1.23 16 27 H 0.07 0.97 7.47 -51.93 -0.39 0.59 16 28 H 0.08 1.19 8.08 -51.93 -0.42 0.77 16 29 H 0.08 0.85 7.58 -51.92 -0.39 0.45 16 30 H 0.08 0.83 7.38 -51.93 -0.38 0.45 16 31 H 0.08 0.62 8.14 -51.93 -0.42 0.19 16 32 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 35 H 0.08 1.36 7.72 -51.93 -0.40 0.96 16 36 H 0.04 0.72 7.68 -51.93 -0.40 0.32 16 LS Contribution 273.80 15.07 4.13 4.13 Total: -1.00 -31.59 273.80 -7.13 -38.71 By element: Atomic # 1 Polarization: 3.79 SS G_CDS: -5.83 Total: -2.04 kcal Atomic # 6 Polarization: -13.02 SS G_CDS: -0.48 Total: -13.50 kcal Atomic # 7 Polarization: -38.77 SS G_CDS: -0.37 Total: -39.14 kcal Atomic # 8 Polarization: -5.70 SS G_CDS: -0.39 Total: -6.08 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -4.19 Total: 17.92 kcal Total LS contribution 4.13 Total: 4.13 kcal Total: -31.59 -7.13 -38.71 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885707490.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.599 kcal (2) G-P(sol) polarization free energy of solvation -31.585 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.987 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.128 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.713 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.115 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds