Wall clock time and date at job start Mon Mar 30 2020 03:04:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09007 * 109.47099 * 2 1 4 4 C 1.50703 * 109.47682 * 119.99858 * 2 1 3 5 5 H 1.07993 * 119.99982 * 114.44339 * 4 2 1 6 6 C 1.37873 * 119.99820 * 294.45634 * 4 2 1 7 7 N 1.31516 * 120.00204 * 179.97438 * 6 4 2 8 8 Si 1.86803 * 120.00068 * 359.97438 * 6 4 2 9 9 H 1.48490 * 109.47344 * 90.00448 * 8 6 4 10 10 H 1.48502 * 109.47246 * 330.00164 * 8 6 4 11 11 H 1.48507 * 109.47093 * 210.00475 * 8 6 4 12 12 N 1.46896 * 109.47343 * 239.99923 * 2 1 3 13 13 C 1.47983 * 111.00399 * 179.50028 * 12 2 1 14 14 C 1.54210 * 107.03162 * 214.34163 * 13 12 2 15 15 C 1.53630 * 104.89971 * 1.79890 * 14 13 12 16 16 C 1.53177 * 111.01075 * 140.23509 * 15 14 13 17 17 C 1.55057 * 103.75428 * 124.28609 * 16 15 14 18 18 C 1.55072 * 102.12569 * 20.83403 * 17 16 15 19 19 O 1.42671 * 111.40949 * 261.22223 * 15 14 13 20 20 C 1.48713 * 111.00028 * 61.94359 * 12 2 1 21 21 H 1.09000 * 109.47402 * 299.99860 * 1 2 3 22 22 H 1.08996 * 109.47299 * 60.00028 * 1 2 3 23 23 H 1.09007 * 109.47099 * 180.02562 * 1 2 3 24 24 H 0.96999 * 120.00151 * 179.97438 * 7 6 4 25 25 H 1.08996 * 109.92064 * 333.69206 * 13 12 2 26 26 H 1.09009 * 109.91941 * 94.79486 * 13 12 2 27 27 H 1.08997 * 110.35302 * 120.65165 * 14 13 12 28 28 H 1.08992 * 110.35629 * 242.83171 * 14 13 12 29 29 H 1.09008 * 110.56533 * 242.84873 * 16 15 14 30 30 H 1.09001 * 110.56939 * 5.56579 * 16 15 14 31 31 H 1.09004 * 110.87406 * 138.99720 * 17 16 15 32 32 H 1.09000 * 110.87068 * 262.67798 * 17 16 15 33 33 H 1.09000 * 110.58528 * 82.12343 * 18 17 16 34 34 H 1.08999 * 110.58372 * 204.88339 * 18 17 16 35 35 H 1.09000 * 110.67393 * 277.18708 * 20 12 2 36 36 H 1.09006 * 110.67595 * 40.34403 * 20 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 1.2305 5 1 2.5773 -1.6377 1.1339 6 6 1.7962 -0.1764 2.4795 7 7 2.2342 -0.7965 3.5533 8 14 0.8540 1.4279 2.6464 9 1 -0.5974 1.1392 2.7687 10 1 1.0919 2.2690 1.4459 11 1 1.3186 2.1511 3.8575 12 7 2.0196 -0.6925 -1.1994 13 6 3.4989 -0.7018 -1.2396 14 6 3.9111 -0.5974 -2.7220 15 6 2.5871 -0.4836 -3.4930 16 6 2.7051 0.5234 -4.6412 17 6 2.2910 -0.2937 -5.8922 18 6 1.4853 -1.4616 -5.2664 19 8 2.1903 -1.7422 -4.0351 20 6 1.5817 0.0085 -2.4357 21 1 -0.3634 0.5138 0.8900 22 1 -0.3634 0.5138 -0.8899 23 1 -0.3634 -1.0277 0.0005 24 1 2.0684 -0.4207 4.4320 25 1 3.8909 0.1501 -0.6842 26 1 3.8762 -1.6302 -0.8106 27 1 4.5217 0.2908 -2.8840 28 1 4.4545 -1.4911 -3.0283 29 1 2.0239 1.3605 -4.4879 30 1 3.7314 0.8785 -4.7353 31 1 1.6618 0.3015 -6.5541 32 1 3.1685 -0.6665 -6.4205 33 1 0.4607 -1.1526 -5.0594 34 1 1.4969 -2.3308 -5.9240 35 1 0.5665 -0.2836 -2.7045 36 1 1.6522 1.0891 -2.3109 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000885707490.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:04:12 Heat of formation + Delta-G solvation = -58.813068 kcal Electronic energy + Delta-G solvation = -16467.280002 eV Core-core repulsion = 13950.471948 eV Total energy + Delta-G solvation = -2516.808054 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.30613 -38.56658 -35.34261 -33.51332 -32.90201 -30.17932 -29.84940 -27.21160 -25.81631 -23.10614 -22.63038 -21.13943 -20.99966 -18.85143 -17.54803 -17.16270 -16.50528 -15.97898 -15.72318 -15.41750 -14.96400 -14.71278 -14.40568 -14.00631 -13.67951 -13.43043 -13.11233 -12.85470 -12.73764 -12.53702 -12.45971 -12.15112 -12.03834 -11.76045 -11.67118 -11.48612 -11.35545 -11.12689 -10.76508 -10.47649 -9.06375 -8.30408 -6.34355 1.28432 1.31949 1.42556 2.29912 2.95948 3.03045 3.28690 3.60423 3.63799 3.89828 4.01813 4.18065 4.25385 4.42635 4.48240 4.56670 4.65887 4.68041 4.72278 4.81941 4.85503 4.91335 4.92841 4.95458 4.98244 5.09151 5.17323 5.20323 5.29403 5.40635 5.63654 5.99389 6.12648 6.31812 6.64946 6.72105 7.30825 8.86678 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.048886 B = 0.007466 C = 0.007144 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 572.624200 B = 3749.534023 C = 3918.198627 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.176 3.824 3 H -0.004 1.004 4 C -0.508 4.508 5 H 0.032 0.968 6 C 0.011 3.989 7 N -0.949 5.949 8 Si 0.946 3.054 9 H -0.263 1.263 10 H -0.248 1.248 11 H -0.291 1.291 12 N -0.520 5.520 13 C 0.053 3.947 14 C -0.118 4.118 15 C 0.103 3.897 16 C -0.140 4.140 17 C -0.143 4.143 18 C 0.031 3.969 19 O -0.380 6.380 20 C 0.021 3.979 21 H 0.038 0.962 22 H 0.060 0.940 23 H 0.048 0.952 24 H 0.266 0.734 25 H 0.030 0.970 26 H 0.045 0.955 27 H 0.100 0.900 28 H 0.079 0.921 29 H 0.087 0.913 30 H 0.093 0.907 31 H 0.101 0.899 32 H 0.083 0.917 33 H 0.060 0.940 34 H 0.103 0.897 35 H 0.078 0.922 36 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.865 5.942 -19.892 20.778 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.068 3.932 3 H 0.014 0.986 4 C -0.546 4.546 5 H 0.050 0.950 6 C -0.186 4.186 7 N -0.589 5.589 8 Si 0.772 3.228 9 H -0.188 1.188 10 H -0.172 1.172 11 H -0.218 1.218 12 N -0.244 5.244 13 C -0.075 4.075 14 C -0.155 4.155 15 C 0.062 3.938 16 C -0.177 4.177 17 C -0.181 4.181 18 C -0.045 4.045 19 O -0.299 6.299 20 C -0.107 4.107 21 H 0.057 0.943 22 H 0.079 0.921 23 H 0.068 0.932 24 H 0.075 0.925 25 H 0.049 0.951 26 H 0.064 0.936 27 H 0.118 0.882 28 H 0.098 0.902 29 H 0.105 0.895 30 H 0.112 0.888 31 H 0.120 0.880 32 H 0.102 0.898 33 H 0.079 0.921 34 H 0.121 0.879 35 H 0.096 0.904 36 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -1.027 5.205 -19.572 20.279 hybrid contribution -0.043 1.094 1.047 1.515 sum -1.070 6.300 -18.526 19.597 Atomic orbital electron populations 1.21991 0.96715 1.01107 0.99600 1.19764 0.93002 0.91632 0.88839 0.98639 1.21160 1.34864 1.08115 0.90497 0.95006 1.25814 0.96594 1.00960 0.95194 1.70047 1.48546 1.41633 0.98706 0.85859 0.79247 0.79849 0.77895 1.18835 1.17226 1.21844 1.64602 1.08165 1.49979 1.01694 1.22579 0.88829 0.99725 0.96363 1.22557 0.96487 1.03737 0.92761 1.22267 0.93184 0.84798 0.93508 1.22923 1.04132 0.97809 0.92885 1.23154 1.01123 0.96504 0.97296 1.23868 0.95835 0.99575 0.85192 1.88851 1.74647 1.27579 1.38860 1.23669 0.99902 0.96362 0.90721 0.94336 0.92126 0.93243 0.92465 0.95144 0.93599 0.88157 0.90214 0.89483 0.88804 0.88043 0.89783 0.92130 0.87888 0.90356 0.92925 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.01 8.68 71.98 0.63 -5.39 16 2 C 0.18 8.66 1.31 44.17 0.06 8.71 16 3 H 0.00 -0.19 6.67 -2.38 -0.02 -0.20 16 4 C -0.51 -30.36 8.53 25.60 0.22 -30.14 16 5 H 0.03 2.15 7.71 -2.91 -0.02 2.13 16 6 C 0.01 0.69 5.45 84.65 0.46 1.15 16 7 N -0.95 -60.81 13.96 21.45 0.30 -60.51 16 8 Si 0.95 45.37 24.67 68.60 1.69 47.06 16 9 H -0.26 -11.96 6.88 99.48 0.68 -11.27 16 10 H -0.25 -11.04 6.38 99.48 0.64 -10.41 16 11 H -0.29 -13.76 7.11 99.48 0.71 -13.06 16 12 N -0.52 -23.07 5.10 -863.03 -4.40 -27.48 16 13 C 0.05 2.22 5.77 86.50 0.50 2.72 16 14 C -0.12 -3.59 6.24 31.22 0.19 -3.39 16 15 C 0.10 2.96 1.05 -10.19 -0.01 2.95 16 16 C -0.14 -2.70 6.26 31.36 0.20 -2.50 16 17 C -0.14 -2.24 7.17 32.01 0.23 -2.01 16 18 C 0.03 0.66 7.73 72.69 0.56 1.22 16 19 O -0.38 -11.90 10.93 -148.98 -1.63 -13.53 16 20 C 0.02 0.73 4.50 86.28 0.39 1.12 16 21 H 0.04 1.70 4.02 -2.39 -0.01 1.69 16 22 H 0.06 2.21 7.01 -2.39 -0.02 2.20 16 23 H 0.05 2.25 8.14 -2.38 -0.02 2.23 16 24 H 0.27 15.90 8.31 -92.71 -0.77 15.13 16 25 H 0.03 1.32 7.71 -2.39 -0.02 1.30 16 26 H 0.05 2.12 8.00 -2.38 -0.02 2.10 16 27 H 0.10 2.46 7.47 -2.39 -0.02 2.45 16 28 H 0.08 2.39 8.08 -2.39 -0.02 2.37 16 29 H 0.09 1.52 7.58 -2.38 -0.02 1.50 16 30 H 0.09 1.55 7.38 -2.39 -0.02 1.53 16 31 H 0.10 1.11 8.14 -2.38 -0.02 1.10 16 32 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 33 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 34 H 0.10 1.80 8.14 -2.39 -0.02 1.78 16 35 H 0.08 2.61 7.72 -2.39 -0.02 2.59 16 36 H 0.05 1.68 7.68 -2.38 -0.02 1.66 16 Total: -1.00 -71.17 273.80 0.33 -70.84 By element: Atomic # 1 Polarization: 8.23 SS G_CDS: 0.95 Total: 9.17 kcal Atomic # 6 Polarization: -28.99 SS G_CDS: 3.42 Total: -25.56 kcal Atomic # 7 Polarization: -83.88 SS G_CDS: -4.10 Total: -87.99 kcal Atomic # 8 Polarization: -11.90 SS G_CDS: -1.63 Total: -13.53 kcal Atomic # 14 Polarization: 45.37 SS G_CDS: 1.69 Total: 47.06 kcal Total: -71.17 0.33 -70.84 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885707490.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.031 kcal (2) G-P(sol) polarization free energy of solvation -71.173 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.142 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.329 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.844 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.813 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds