Wall clock time and date at job start Mon Mar 30 2020 02:37:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09002 * 109.47378 * 2 1 4 4 C 1.53001 * 109.47391 * 239.99872 * 2 1 3 5 5 C 1.50693 * 109.47512 * 176.51991 * 4 2 1 6 6 H 1.08005 * 120.00222 * 355.00189 * 5 4 2 7 7 C 1.37875 * 120.00165 * 174.72639 * 5 4 2 8 8 N 1.31510 * 120.00156 * 0.27454 * 7 5 4 9 9 Si 1.86806 * 119.99890 * 180.27258 * 7 5 4 10 10 H 1.48500 * 109.46938 * 60.00339 * 9 7 5 11 11 H 1.48497 * 109.47019 * 179.97438 * 9 7 5 12 12 H 1.48494 * 109.47423 * 299.99901 * 9 7 5 13 13 N 1.46907 * 109.47127 * 119.99661 * 2 1 3 14 14 C 1.47093 * 110.99708 * 60.65153 * 13 2 1 15 15 C 1.51321 * 108.53609 * 179.74511 * 14 13 2 16 16 O 1.20760 * 120.99881 * 230.29025 * 15 14 13 17 17 C 1.51420 * 117.99167 * 50.27287 * 15 14 13 18 18 C 1.53375 * 108.11586 * 310.90046 * 17 15 14 19 19 C 1.46800 * 110.99902 * 296.48034 * 13 2 1 20 20 H 1.09006 * 109.39700 * 69.32322 * 19 13 2 21 21 C 1.53000 * 109.39973 * 309.58263 * 19 13 2 22 22 H 1.09003 * 109.46763 * 55.48554 * 1 2 3 23 23 H 1.08992 * 109.47041 * 175.48668 * 1 2 3 24 24 H 1.08996 * 109.46663 * 295.48946 * 1 2 3 25 25 H 1.08996 * 109.47206 * 56.51405 * 4 2 1 26 26 H 1.09004 * 109.46874 * 296.51735 * 4 2 1 27 27 H 0.97001 * 120.00507 * 179.97438 * 8 7 5 28 28 H 1.08998 * 109.62482 * 299.45555 * 14 13 2 29 29 H 1.09002 * 109.62745 * 60.02748 * 14 13 2 30 30 H 1.08992 * 109.73283 * 70.55359 * 17 15 14 31 31 H 1.09001 * 109.73033 * 191.24808 * 17 15 14 32 32 H 1.09005 * 109.52792 * 172.35980 * 18 17 15 33 33 H 1.09006 * 109.53273 * 292.56709 * 18 17 15 34 34 H 1.09002 * 109.46904 * 66.73759 * 21 19 13 35 35 H 1.09004 * 109.46660 * 186.72946 * 21 19 13 36 36 H 1.08995 * 109.47300 * 306.73186 * 21 19 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 3.5445 -0.6470 -1.2931 6 1 4.0785 -0.0687 -0.5536 7 6 4.2398 -1.3220 -2.2739 8 7 3.5897 -2.0263 -3.1744 9 14 6.1052 -1.2362 -2.3237 10 1 6.6595 -1.7749 -1.0558 11 1 6.6075 -2.0425 -3.4650 12 1 6.5315 0.1766 -2.4896 13 7 2.0197 -0.6925 1.1995 14 6 1.5608 -2.0897 1.2258 15 6 2.1000 -2.7498 2.4761 16 8 2.6777 -3.8087 2.4207 17 6 1.8936 -2.0421 3.7988 18 6 2.3316 -0.5817 3.6317 19 6 1.6189 0.0202 2.4188 20 1 0.5406 -0.0681 2.5518 21 6 1.9941 1.4979 2.2903 22 1 -0.3633 0.5823 -0.8468 23 1 -0.3633 -1.0244 -0.0809 24 1 -0.3632 0.4422 0.9276 25 1 1.6267 -0.2448 -2.1381 26 1 1.7286 -1.7654 -1.2185 27 1 4.0787 -2.5009 -3.8647 28 1 0.4713 -2.1171 1.2382 29 1 1.9329 -2.6139 0.3455 30 1 0.8404 -2.0809 4.0765 31 1 2.4964 -2.5211 4.5704 32 1 2.0677 -0.0175 4.5263 33 1 3.4100 -0.5399 3.4784 34 1 1.3919 1.9588 1.5073 35 1 1.8072 2.0038 3.2376 36 1 3.0501 1.5837 2.0346 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000885707509.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:37:56 Heat of formation + Delta-G solvation = -41.994079 kcal Electronic energy + Delta-G solvation = -16547.866986 eV Core-core repulsion = 14031.788258 eV Total energy + Delta-G solvation = -2516.078728 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.86323 -37.79613 -34.44268 -32.37182 -30.97073 -29.85638 -27.34538 -25.79398 -24.22516 -23.10545 -20.88466 -19.49207 -18.29798 -16.24344 -16.06424 -15.28450 -14.89546 -14.55864 -14.45453 -13.99993 -13.55951 -13.19542 -12.76885 -12.30613 -12.21317 -12.13591 -11.70374 -11.66440 -11.38918 -11.05448 -11.00165 -10.68954 -10.62728 -10.47321 -10.38046 -9.87076 -9.25524 -9.06218 -8.96217 -8.24479 -7.59988 -5.87951 -3.86148 2.28164 3.43063 3.47048 3.50991 4.33373 4.48157 4.58494 4.90627 4.99669 5.18396 5.43254 5.49217 5.55071 5.61945 5.69805 5.70721 5.84161 5.85852 5.90456 5.97090 6.07100 6.15354 6.30487 6.38405 6.51889 6.54729 6.67059 6.92921 7.41109 7.62726 7.78622 7.86717 7.93909 8.12084 8.55942 9.18921 9.76097 11.23873 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.024269 B = 0.009751 C = 0.008771 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1153.457173 B = 2870.845480 C = 3191.492543 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.084 3.916 3 H 0.081 0.919 4 C 0.026 3.974 5 C -0.493 4.493 6 H 0.060 0.940 7 C 0.053 3.947 8 N -0.903 5.903 9 Si 0.889 3.111 10 H -0.278 1.278 11 H -0.291 1.291 12 H -0.279 1.279 13 N -0.497 5.497 14 C 0.007 3.993 15 C 0.370 3.630 16 O -0.458 6.458 17 C -0.171 4.171 18 C -0.104 4.104 19 C 0.069 3.931 20 H 0.039 0.961 21 C -0.145 4.145 22 H 0.057 0.943 23 H 0.051 0.949 24 H 0.043 0.957 25 H 0.017 0.983 26 H 0.022 0.978 27 H 0.258 0.742 28 H 0.058 0.942 29 H 0.118 0.882 30 H 0.091 0.909 31 H 0.084 0.916 32 H 0.072 0.928 33 H 0.077 0.923 34 H 0.059 0.941 35 H 0.052 0.948 36 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.604 4.706 12.284 14.719 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.246 4.246 2 C -0.024 4.024 3 H 0.099 0.901 4 C -0.011 4.011 5 C -0.531 4.531 6 H 0.078 0.922 7 C -0.147 4.147 8 N -0.543 5.543 9 Si 0.718 3.282 10 H -0.203 1.203 11 H -0.216 1.216 12 H -0.205 1.205 13 N -0.223 5.223 14 C -0.121 4.121 15 C 0.245 3.755 16 O -0.329 6.329 17 C -0.209 4.209 18 C -0.142 4.142 19 C -0.039 4.039 20 H 0.056 0.944 21 C -0.203 4.203 22 H 0.076 0.924 23 H 0.070 0.930 24 H 0.062 0.938 25 H 0.035 0.965 26 H 0.041 0.959 27 H 0.068 0.932 28 H 0.076 0.924 29 H 0.136 0.864 30 H 0.109 0.891 31 H 0.103 0.897 32 H 0.090 0.910 33 H 0.096 0.904 34 H 0.078 0.922 35 H 0.071 0.929 36 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -5.737 4.015 12.086 13.968 hybrid contribution 0.056 0.009 -0.084 0.101 sum -5.681 4.024 12.002 13.875 Atomic orbital electron populations 1.22543 0.99725 1.01493 1.00817 1.22029 0.90065 0.98998 0.91275 0.90084 1.19259 0.96521 0.95507 0.89815 1.21086 0.91415 1.29281 1.11363 0.92223 1.24987 0.98044 0.95724 0.95955 1.69939 1.35308 1.32692 1.16381 0.86701 0.86432 0.77768 0.77340 1.20328 1.21643 1.20488 1.62263 1.59087 0.99543 1.01389 1.22899 0.98467 0.92036 0.98722 1.24919 0.74106 0.84257 0.92255 1.90382 1.31573 1.21859 1.89131 1.22390 1.03249 0.97936 0.97347 1.21605 1.02017 0.93086 0.97522 1.21691 0.96779 0.94496 0.90970 0.94365 1.21884 1.03122 0.94239 1.01028 0.92363 0.92970 0.93774 0.96487 0.95931 0.93222 0.92392 0.86371 0.89117 0.89730 0.90953 0.90439 0.92237 0.92871 0.91298 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.97 8.39 37.16 0.31 -2.66 16 2 C 0.08 1.60 1.82 -67.71 -0.12 1.48 16 3 H 0.08 1.55 6.11 -51.93 -0.32 1.24 16 4 C 0.03 0.64 4.19 -27.89 -0.12 0.52 16 5 C -0.49 -13.67 8.80 -34.44 -0.30 -13.97 16 6 H 0.06 1.65 7.75 -52.48 -0.41 1.24 16 7 C 0.05 1.52 5.46 -17.82 -0.10 1.42 16 8 N -0.90 -27.29 13.29 55.43 0.74 -26.55 16 9 Si 0.89 22.40 29.54 -169.99 -5.02 17.38 16 10 H -0.28 -7.03 7.11 56.52 0.40 -6.62 16 11 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 12 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 13 N -0.50 -8.98 4.20 -219.66 -0.92 -9.91 16 14 C 0.01 0.12 4.90 -4.57 -0.02 0.10 16 15 C 0.37 6.43 6.87 -28.38 -0.20 6.23 16 16 O -0.46 -9.58 17.90 6.00 0.11 -9.47 16 17 C -0.17 -2.19 6.24 -27.34 -0.17 -2.36 16 18 C -0.10 -1.29 5.40 -26.53 -0.14 -1.44 16 19 C 0.07 0.97 1.82 -67.76 -0.12 0.84 16 20 H 0.04 0.50 6.77 -51.93 -0.35 0.15 16 21 C -0.15 -1.87 8.36 37.16 0.31 -1.56 16 22 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 23 H 0.05 0.84 6.68 -51.93 -0.35 0.49 16 24 H 0.04 0.60 6.44 -51.93 -0.33 0.27 16 25 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 26 H 0.02 0.60 6.21 -51.93 -0.32 0.27 16 27 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 28 H 0.06 0.92 6.46 -51.93 -0.34 0.59 16 29 H 0.12 2.61 6.23 -51.93 -0.32 2.29 16 30 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 31 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 32 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 34 H 0.06 0.77 6.55 -51.93 -0.34 0.43 16 35 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 36 H 0.07 0.99 8.14 -51.93 -0.42 0.56 16 LS Contribution 281.13 15.07 4.24 4.24 Total: -1.00 -31.17 281.13 -7.13 -38.30 By element: Atomic # 1 Polarization: 2.99 SS G_CDS: -5.59 Total: -2.60 kcal Atomic # 6 Polarization: -10.71 SS G_CDS: -0.67 Total: -11.38 kcal Atomic # 7 Polarization: -36.27 SS G_CDS: -0.19 Total: -36.46 kcal Atomic # 8 Polarization: -9.58 SS G_CDS: 0.11 Total: -9.47 kcal Atomic # 14 Polarization: 22.40 SS G_CDS: -5.02 Total: 17.38 kcal Total LS contribution 4.24 Total: 4.24 kcal Total: -31.17 -7.13 -38.30 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885707509.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.691 kcal (2) G-P(sol) polarization free energy of solvation -31.174 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.864 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.130 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.303 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.994 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds