Wall clock time and date at job start Mon Mar 30 2020 02:37:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09002 * 109.47378 * 2 1 4 4 C 1.53001 * 109.47391 * 239.99872 * 2 1 3 5 5 C 1.50693 * 109.47512 * 176.51991 * 4 2 1 6 6 H 1.08005 * 120.00222 * 355.00189 * 5 4 2 7 7 C 1.37875 * 120.00165 * 174.72639 * 5 4 2 8 8 N 1.31510 * 120.00156 * 0.27454 * 7 5 4 9 9 Si 1.86806 * 119.99890 * 180.27258 * 7 5 4 10 10 H 1.48500 * 109.46938 * 60.00339 * 9 7 5 11 11 H 1.48497 * 109.47019 * 179.97438 * 9 7 5 12 12 H 1.48494 * 109.47423 * 299.99901 * 9 7 5 13 13 N 1.46907 * 109.47127 * 119.99661 * 2 1 3 14 14 C 1.47093 * 110.99708 * 60.65153 * 13 2 1 15 15 C 1.51321 * 108.53609 * 179.74511 * 14 13 2 16 16 O 1.20760 * 120.99881 * 230.29025 * 15 14 13 17 17 C 1.51420 * 117.99167 * 50.27287 * 15 14 13 18 18 C 1.53375 * 108.11586 * 310.90046 * 17 15 14 19 19 C 1.46800 * 110.99902 * 296.48034 * 13 2 1 20 20 H 1.09006 * 109.39700 * 69.32322 * 19 13 2 21 21 C 1.53000 * 109.39973 * 309.58263 * 19 13 2 22 22 H 1.09003 * 109.46763 * 55.48554 * 1 2 3 23 23 H 1.08992 * 109.47041 * 175.48668 * 1 2 3 24 24 H 1.08996 * 109.46663 * 295.48946 * 1 2 3 25 25 H 1.08996 * 109.47206 * 56.51405 * 4 2 1 26 26 H 1.09004 * 109.46874 * 296.51735 * 4 2 1 27 27 H 0.97001 * 120.00507 * 179.97438 * 8 7 5 28 28 H 1.08998 * 109.62482 * 299.45555 * 14 13 2 29 29 H 1.09002 * 109.62745 * 60.02748 * 14 13 2 30 30 H 1.08992 * 109.73283 * 70.55359 * 17 15 14 31 31 H 1.09001 * 109.73033 * 191.24808 * 17 15 14 32 32 H 1.09005 * 109.52792 * 172.35980 * 18 17 15 33 33 H 1.09006 * 109.53273 * 292.56709 * 18 17 15 34 34 H 1.09002 * 109.46904 * 66.73759 * 21 19 13 35 35 H 1.09004 * 109.46660 * 186.72946 * 21 19 13 36 36 H 1.08995 * 109.47300 * 306.73186 * 21 19 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 3.5445 -0.6470 -1.2931 6 1 4.0785 -0.0687 -0.5536 7 6 4.2398 -1.3220 -2.2739 8 7 3.5897 -2.0263 -3.1744 9 14 6.1052 -1.2362 -2.3237 10 1 6.6595 -1.7749 -1.0558 11 1 6.6075 -2.0425 -3.4650 12 1 6.5315 0.1766 -2.4896 13 7 2.0197 -0.6925 1.1995 14 6 1.5608 -2.0897 1.2258 15 6 2.1000 -2.7498 2.4761 16 8 2.6777 -3.8087 2.4207 17 6 1.8936 -2.0421 3.7988 18 6 2.3316 -0.5817 3.6317 19 6 1.6189 0.0202 2.4188 20 1 0.5406 -0.0681 2.5518 21 6 1.9941 1.4979 2.2903 22 1 -0.3633 0.5823 -0.8468 23 1 -0.3633 -1.0244 -0.0809 24 1 -0.3632 0.4422 0.9276 25 1 1.6267 -0.2448 -2.1381 26 1 1.7286 -1.7654 -1.2185 27 1 4.0787 -2.5009 -3.8647 28 1 0.4713 -2.1171 1.2382 29 1 1.9329 -2.6139 0.3455 30 1 0.8404 -2.0809 4.0765 31 1 2.4964 -2.5211 4.5704 32 1 2.0677 -0.0175 4.5263 33 1 3.4100 -0.5399 3.4784 34 1 1.3919 1.9588 1.5073 35 1 1.8072 2.0038 3.2376 36 1 3.0501 1.5837 2.0346 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000885707509.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:37:55 Heat of formation + Delta-G solvation = -62.956500 kcal Electronic energy + Delta-G solvation = -16548.775985 eV Core-core repulsion = 14031.788258 eV Total energy + Delta-G solvation = -2516.987727 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.21164 -39.24084 -35.93530 -34.32764 -32.18556 -31.32368 -29.16251 -27.07235 -25.46856 -24.97287 -22.19690 -20.92925 -19.59659 -18.37047 -17.50397 -16.78812 -16.39358 -16.13218 -15.75108 -15.35721 -15.02512 -14.72147 -14.04175 -13.92424 -13.81364 -13.50368 -13.17293 -12.97267 -12.80063 -12.55152 -12.44622 -12.32342 -12.21830 -12.07362 -11.71112 -11.34998 -11.11454 -10.98727 -10.47766 -10.41456 -8.94654 -8.11395 -6.15338 0.91831 1.38070 1.41970 1.48118 2.45367 3.02021 3.20083 3.27185 3.80312 3.94476 4.02543 4.28302 4.33800 4.43368 4.49069 4.54081 4.57244 4.65446 4.80771 4.95915 4.97931 5.07036 5.10941 5.18803 5.23057 5.25563 5.35778 5.47183 5.55361 5.72701 5.88750 6.23926 6.37710 6.50750 6.54430 6.98765 7.50387 9.00290 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.024269 B = 0.009751 C = 0.008771 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1153.457173 B = 2870.845480 C = 3191.492543 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.094 3.906 3 H 0.083 0.917 4 C 0.029 3.971 5 C -0.497 4.497 6 H 0.058 0.942 7 C -0.006 4.006 8 N -0.939 5.939 9 Si 0.951 3.049 10 H -0.279 1.279 11 H -0.288 1.288 12 H -0.264 1.264 13 N -0.520 5.520 14 C 0.008 3.992 15 C 0.368 3.632 16 O -0.506 6.506 17 C -0.158 4.158 18 C -0.100 4.100 19 C 0.065 3.935 20 H 0.063 0.937 21 C -0.143 4.143 22 H 0.059 0.941 23 H 0.046 0.954 24 H 0.077 0.923 25 H -0.007 1.007 26 H -0.004 1.004 27 H 0.257 0.743 28 H 0.083 0.917 29 H 0.063 0.937 30 H 0.128 0.872 31 H 0.095 0.905 32 H 0.116 0.884 33 H 0.056 0.944 34 H 0.056 0.944 35 H 0.087 0.913 36 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.324 6.415 15.007 17.889 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C -0.014 4.014 3 H 0.101 0.899 4 C -0.008 4.008 5 C -0.536 4.536 6 H 0.076 0.924 7 C -0.202 4.202 8 N -0.581 5.581 9 Si 0.777 3.223 10 H -0.205 1.205 11 H -0.214 1.214 12 H -0.189 1.189 13 N -0.247 5.247 14 C -0.120 4.120 15 C 0.246 3.754 16 O -0.381 6.381 17 C -0.195 4.195 18 C -0.137 4.137 19 C -0.042 4.042 20 H 0.080 0.920 21 C -0.200 4.200 22 H 0.078 0.922 23 H 0.065 0.935 24 H 0.096 0.904 25 H 0.011 0.989 26 H 0.014 0.986 27 H 0.066 0.934 28 H 0.100 0.900 29 H 0.082 0.918 30 H 0.146 0.854 31 H 0.114 0.886 32 H 0.134 0.866 33 H 0.075 0.925 34 H 0.075 0.925 35 H 0.106 0.894 36 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -6.465 5.759 14.824 17.167 hybrid contribution 0.250 -0.503 -0.932 1.088 sum -6.215 5.256 13.892 16.101 Atomic orbital electron populations 1.22414 0.96875 1.01578 1.02702 1.21703 0.92278 0.97942 0.89450 0.89919 1.19144 0.95090 0.94468 0.92100 1.21455 0.93186 1.28291 1.10621 0.92411 1.25825 1.02642 0.95759 0.95937 1.70071 1.36936 1.33915 1.17225 0.85714 0.81112 0.78418 0.77060 1.20481 1.21389 1.18888 1.62137 1.60303 0.99520 1.02750 1.22743 0.99736 0.92092 0.97453 1.25513 0.72353 0.83452 0.94068 1.90367 1.33801 1.24033 1.89929 1.22393 1.05808 0.97327 0.93991 1.21651 1.00589 0.93034 0.98450 1.21903 0.98374 0.94661 0.89277 0.91957 1.21879 1.01614 0.93691 1.02822 0.92173 0.93519 0.90389 0.98912 0.98610 0.93394 0.89962 0.91849 0.85396 0.88622 0.86560 0.92527 0.92515 0.89405 0.93498 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -5.31 8.39 71.98 0.60 -4.70 16 2 C 0.09 3.57 1.82 44.91 0.08 3.65 16 3 H 0.08 3.11 6.11 -2.39 -0.01 3.09 16 4 C 0.03 1.50 4.19 29.85 0.13 1.62 16 5 C -0.50 -28.43 8.80 25.60 0.23 -28.20 16 6 H 0.06 3.25 7.75 -2.91 -0.02 3.23 16 7 C -0.01 -0.33 5.46 84.65 0.46 0.13 16 8 N -0.94 -58.98 13.29 21.45 0.28 -58.69 16 9 Si 0.95 46.95 29.54 68.60 2.03 48.98 16 10 H -0.28 -13.74 7.11 99.48 0.71 -13.04 16 11 H -0.29 -14.02 7.11 99.48 0.71 -13.32 16 12 H -0.26 -12.31 7.11 99.48 0.71 -11.60 16 13 N -0.52 -18.36 4.20 -848.88 -3.56 -21.92 16 14 C 0.01 0.29 4.90 85.72 0.42 0.71 16 15 C 0.37 12.56 6.87 29.53 0.20 12.76 16 16 O -0.51 -21.67 17.90 -1.45 -0.03 -21.70 16 17 C -0.16 -3.43 6.24 30.20 0.19 -3.24 16 18 C -0.10 -2.05 5.40 30.72 0.17 -1.88 16 19 C 0.07 1.58 1.82 44.94 0.08 1.66 16 20 H 0.06 1.27 6.77 -2.38 -0.02 1.25 16 21 C -0.14 -3.15 8.36 71.98 0.60 -2.55 16 22 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 23 H 0.05 1.44 6.68 -2.39 -0.02 1.42 16 24 H 0.08 1.82 6.44 -2.39 -0.02 1.81 16 25 H -0.01 -0.41 8.14 -2.39 -0.02 -0.43 16 26 H 0.00 -0.25 6.21 -2.38 -0.01 -0.26 16 27 H 0.26 15.45 8.31 -92.71 -0.77 14.68 16 28 H 0.08 2.54 6.46 -2.39 -0.02 2.52 16 29 H 0.06 3.01 6.23 -2.39 -0.01 2.99 16 30 H 0.13 1.93 8.14 -2.39 -0.02 1.91 16 31 H 0.10 1.95 8.14 -2.39 -0.02 1.93 16 32 H 0.12 1.49 8.14 -2.38 -0.02 1.47 16 33 H 0.06 1.42 8.14 -2.38 -0.02 1.40 16 34 H 0.06 1.28 6.55 -2.39 -0.02 1.26 16 35 H 0.09 1.35 8.14 -2.38 -0.02 1.33 16 36 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16 Total: -1.00 -71.68 281.13 2.93 -68.75 By element: Atomic # 1 Polarization: 3.57 SS G_CDS: 1.05 Total: 4.62 kcal Atomic # 6 Polarization: -23.20 SS G_CDS: 3.16 Total: -20.04 kcal Atomic # 7 Polarization: -77.34 SS G_CDS: -3.28 Total: -80.61 kcal Atomic # 8 Polarization: -21.67 SS G_CDS: -0.03 Total: -21.70 kcal Atomic # 14 Polarization: 46.95 SS G_CDS: 2.03 Total: 48.98 kcal Total: -71.68 2.93 -68.75 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885707509.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.789 kcal (2) G-P(sol) polarization free energy of solvation -71.677 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.888 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.932 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.745 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.957 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds