Wall clock time and date at job start Mon Mar 30 2020 02:37:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08997 * 109.47706 * 2 1 4 4 C 1.53009 * 109.46611 * 119.99976 * 2 1 3 5 5 C 1.50699 * 109.46993 * 187.68064 * 4 2 1 6 6 H 1.08005 * 119.99694 * 5.69344 * 5 4 2 7 7 C 1.37872 * 120.00007 * 185.68796 * 5 4 2 8 8 N 1.31513 * 120.00297 * 0.02562 * 7 5 4 9 9 Si 1.86805 * 120.00119 * 180.02562 * 7 5 4 10 10 H 1.48500 * 109.46919 * 60.00122 * 9 7 5 11 11 H 1.48503 * 109.47149 * 180.02562 * 9 7 5 12 12 H 1.48510 * 109.47055 * 300.00426 * 9 7 5 13 13 N 1.46897 * 109.47048 * 239.99605 * 2 1 3 14 14 C 1.47099 * 111.00318 * 289.29191 * 13 2 1 15 15 C 1.51316 * 108.54005 * 179.74094 * 14 13 2 16 16 O 1.20761 * 121.00770 * 230.27498 * 15 14 13 17 17 C 1.51428 * 117.98672 * 50.28007 * 15 14 13 18 18 C 1.53379 * 108.11663 * 310.89779 * 17 15 14 19 19 C 1.46799 * 111.00068 * 165.12736 * 13 2 1 20 20 H 1.09002 * 109.40077 * 69.32293 * 19 13 2 21 21 C 1.53000 * 109.39742 * 309.58743 * 19 13 2 22 22 H 1.08992 * 109.47622 * 185.83855 * 1 2 3 23 23 H 1.09006 * 109.46498 * 65.83837 * 1 2 3 24 24 H 1.08996 * 109.47172 * 305.84673 * 1 2 3 25 25 H 1.09001 * 109.46871 * 307.68394 * 4 2 1 26 26 H 1.09003 * 109.46937 * 67.68566 * 4 2 1 27 27 H 0.97001 * 120.00264 * 179.97438 * 8 7 5 28 28 H 1.08996 * 109.62680 * 299.46394 * 14 13 2 29 29 H 1.09002 * 109.61716 * 60.02824 * 14 13 2 30 30 H 1.09000 * 109.72648 * 191.24404 * 17 15 14 31 31 H 1.08998 * 109.73120 * 70.55769 * 17 15 14 32 32 H 1.08994 * 109.52460 * 292.56671 * 18 17 15 33 33 H 1.08998 * 109.52052 * 172.36189 * 18 17 15 34 34 H 1.08998 * 109.47196 * 67.05982 * 21 19 13 35 35 H 1.09005 * 109.46816 * 187.06169 * 21 19 13 36 36 H 1.09000 * 109.47008 * 307.05363 * 21 19 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7213 1.2494 5 6 3.5349 -0.5590 1.3481 6 1 4.0563 0.0775 0.6485 7 6 4.2369 -1.2230 2.3315 8 7 3.6021 -1.9984 3.1831 9 14 6.0900 -1.0213 2.4543 10 1 6.4181 0.4088 2.6828 11 1 6.6024 -1.8343 3.5865 12 1 6.7225 -1.4786 1.1909 13 7 2.0196 -0.6926 -1.1994 14 6 1.7676 -2.1392 -1.1126 15 6 2.2860 -2.7944 -2.3743 16 8 1.5937 -3.5509 -3.0120 17 6 3.6992 -2.4728 -2.8128 18 6 3.8700 -0.9487 -2.7917 19 6 3.4438 -0.4152 -1.4225 20 1 4.0334 -0.9011 -0.6450 21 6 3.6818 1.0952 -1.3690 22 1 -0.3634 -1.0222 0.1045 23 1 -0.3632 0.4207 -0.9377 24 1 -0.3633 0.6018 0.8330 25 1 1.5686 -0.2929 2.1339 26 1 1.7931 -1.7810 1.1833 27 1 4.0960 -2.4659 3.8748 28 1 2.2868 -2.5500 -0.2468 29 1 0.6965 -2.3192 -1.0201 30 1 3.8654 -2.8479 -3.8227 31 1 4.4109 -2.9325 -2.1271 32 1 3.2477 -0.5017 -3.5669 33 1 4.9151 -0.6968 -2.9718 34 1 3.5054 1.4552 -0.3554 35 1 4.7105 1.3114 -1.6575 36 1 2.9991 1.5952 -2.0561 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000885707511.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:37:59 Heat of formation + Delta-G solvation = -35.460280 kcal Electronic energy + Delta-G solvation = -16847.681619 eV Core-core repulsion = 14331.886217 eV Total energy + Delta-G solvation = -2515.795401 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.77243 -37.77316 -34.18255 -32.57242 -30.81399 -29.81633 -27.50102 -25.58658 -24.06923 -23.05544 -20.74556 -19.37797 -18.24902 -16.51402 -16.00297 -15.23128 -14.73245 -14.57340 -14.30787 -13.77353 -13.44684 -12.94046 -12.60679 -12.32830 -12.06504 -12.02473 -11.58475 -11.46509 -11.21597 -11.11109 -10.98196 -10.66592 -10.40444 -10.30607 -10.19833 -9.90350 -9.50651 -9.05089 -8.96332 -8.46382 -7.33768 -6.11811 -4.12821 2.34811 3.22471 3.29295 3.30437 4.34056 4.47991 4.69618 5.14337 5.22190 5.30951 5.37429 5.71462 5.79302 5.88253 6.04869 6.08918 6.12980 6.13828 6.19241 6.26672 6.32333 6.40517 6.46777 6.63420 6.72566 6.79728 6.86381 7.07727 7.41552 7.54030 7.71660 7.87088 7.93502 7.99115 8.27921 8.91843 9.49311 10.98882 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.023063 B = 0.011282 C = 0.010225 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1213.752292 B = 2481.156433 C = 2737.818148 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.071 3.929 3 H 0.081 0.919 4 C -0.010 4.010 5 C -0.533 4.533 6 H 0.076 0.924 7 C 0.061 3.939 8 N -0.890 5.890 9 Si 0.883 3.117 10 H -0.276 1.276 11 H -0.288 1.288 12 H -0.275 1.275 13 N -0.511 5.511 14 C 0.000 4.000 15 C 0.375 3.625 16 O -0.475 6.475 17 C -0.171 4.171 18 C -0.104 4.104 19 C 0.052 3.948 20 H 0.100 0.900 21 C -0.145 4.145 22 H 0.046 0.954 23 H 0.048 0.952 24 H 0.051 0.949 25 H 0.016 0.984 26 H 0.027 0.973 27 H 0.261 0.739 28 H 0.095 0.905 29 H 0.089 0.911 30 H 0.080 0.920 31 H 0.097 0.903 32 H 0.065 0.935 33 H 0.071 0.929 34 H 0.073 0.927 35 H 0.049 0.951 36 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.361 2.997 -8.108 8.652 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.036 4.036 3 H 0.099 0.901 4 C -0.047 4.047 5 C -0.571 4.571 6 H 0.094 0.906 7 C -0.141 4.141 8 N -0.529 5.529 9 Si 0.710 3.290 10 H -0.201 1.201 11 H -0.213 1.213 12 H -0.201 1.201 13 N -0.237 5.237 14 C -0.128 4.128 15 C 0.252 3.748 16 O -0.349 6.349 17 C -0.209 4.209 18 C -0.142 4.142 19 C -0.056 4.056 20 H 0.117 0.883 21 C -0.203 4.203 22 H 0.065 0.935 23 H 0.067 0.933 24 H 0.070 0.930 25 H 0.034 0.966 26 H 0.045 0.955 27 H 0.071 0.929 28 H 0.113 0.887 29 H 0.108 0.892 30 H 0.098 0.902 31 H 0.115 0.885 32 H 0.083 0.917 33 H 0.089 0.911 34 H 0.092 0.908 35 H 0.068 0.932 36 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -0.244 2.656 -8.697 9.097 hybrid contribution 1.561 -0.286 1.032 1.892 sum 1.317 2.370 -7.666 8.131 Atomic orbital electron populations 1.21825 0.96448 1.01042 1.00438 1.21941 0.93258 0.98722 0.89679 0.90114 1.19799 0.96127 0.96429 0.92388 1.21586 0.92681 1.28279 1.14552 0.90632 1.25023 0.98078 0.95364 0.95673 1.69952 1.35761 1.29635 1.17510 0.86803 0.86064 0.78321 0.77790 1.20121 1.21347 1.20078 1.62596 1.16828 1.05975 1.38333 1.22883 1.02411 0.90968 0.96548 1.25000 0.88748 0.76589 0.84477 1.90336 1.60294 1.30786 1.53472 1.22370 0.96670 0.99000 1.02888 1.21633 1.01240 0.92601 0.98757 1.22176 0.90209 0.96728 0.96510 0.88264 1.21943 1.00265 0.95368 1.02694 0.93459 0.93265 0.92979 0.96561 0.95465 0.92897 0.88726 0.89247 0.90152 0.88502 0.91656 0.91088 0.90816 0.93163 0.93005 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.38 9.09 37.16 0.34 -2.04 16 2 C 0.07 1.37 2.34 -67.71 -0.16 1.21 16 3 H 0.08 1.54 5.48 -51.93 -0.28 1.26 16 4 C -0.01 -0.22 4.00 -27.88 -0.11 -0.33 16 5 C -0.53 -13.20 6.87 -34.44 -0.24 -13.44 16 6 H 0.08 1.75 3.53 -52.48 -0.19 1.57 16 7 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 8 N -0.89 -25.11 13.29 55.43 0.74 -24.37 16 9 Si 0.88 20.14 29.54 -169.99 -5.02 15.12 16 10 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 11 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 12 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 13 N -0.51 -9.28 4.44 -219.67 -0.97 -10.25 16 14 C 0.00 0.00 4.78 -4.56 -0.02 -0.02 16 15 C 0.38 6.70 6.87 -28.38 -0.20 6.51 16 16 O -0.48 -9.53 17.90 6.00 0.11 -9.42 16 17 C -0.17 -2.57 6.24 -27.33 -0.17 -2.74 16 18 C -0.10 -1.52 5.40 -26.53 -0.14 -1.66 16 19 C 0.05 0.89 1.67 -67.76 -0.11 0.78 16 20 H 0.10 2.01 5.00 -51.93 -0.26 1.75 16 21 C -0.15 -2.30 7.73 37.16 0.29 -2.01 16 22 H 0.05 0.81 6.97 -51.93 -0.36 0.45 16 23 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 24 H 0.05 0.84 8.14 -51.93 -0.42 0.41 16 25 H 0.02 0.41 8.13 -51.93 -0.42 -0.01 16 26 H 0.03 0.68 5.85 -51.93 -0.30 0.38 16 27 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 28 H 0.10 1.99 6.05 -51.93 -0.31 1.67 16 29 H 0.09 1.66 6.79 -51.93 -0.35 1.30 16 30 H 0.08 1.09 8.14 -51.93 -0.42 0.66 16 31 H 0.10 1.41 8.14 -51.93 -0.42 0.99 16 32 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 33 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 34 H 0.07 1.29 5.09 -51.93 -0.26 1.02 16 35 H 0.05 0.71 8.13 -51.93 -0.42 0.28 16 36 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 LS Contribution 273.27 15.07 4.12 4.12 Total: -1.00 -27.76 273.27 -6.92 -34.68 By element: Atomic # 1 Polarization: 7.64 SS G_CDS: -5.26 Total: 2.38 kcal Atomic # 6 Polarization: -11.63 SS G_CDS: -0.62 Total: -12.26 kcal Atomic # 7 Polarization: -34.38 SS G_CDS: -0.24 Total: -34.62 kcal Atomic # 8 Polarization: -9.53 SS G_CDS: 0.11 Total: -9.42 kcal Atomic # 14 Polarization: 20.14 SS G_CDS: -5.02 Total: 15.12 kcal Total LS contribution 4.12 Total: 4.12 kcal Total: -27.76 -6.92 -34.68 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885707511.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.780 kcal (2) G-P(sol) polarization free energy of solvation -27.758 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.538 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.922 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.680 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.460 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds