Wall clock time and date at job start Mon Mar 30 2020 02:37:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08997 * 109.47706 * 2 1 4 4 C 1.53009 * 109.46611 * 119.99976 * 2 1 3 5 5 C 1.50699 * 109.46993 * 187.68064 * 4 2 1 6 6 H 1.08005 * 119.99694 * 5.69344 * 5 4 2 7 7 C 1.37872 * 120.00007 * 185.68796 * 5 4 2 8 8 N 1.31513 * 120.00297 * 0.02562 * 7 5 4 9 9 Si 1.86805 * 120.00119 * 180.02562 * 7 5 4 10 10 H 1.48500 * 109.46919 * 60.00122 * 9 7 5 11 11 H 1.48503 * 109.47149 * 180.02562 * 9 7 5 12 12 H 1.48510 * 109.47055 * 300.00426 * 9 7 5 13 13 N 1.46897 * 109.47048 * 239.99605 * 2 1 3 14 14 C 1.47099 * 111.00318 * 289.29191 * 13 2 1 15 15 C 1.51316 * 108.54005 * 179.74094 * 14 13 2 16 16 O 1.20761 * 121.00770 * 230.27498 * 15 14 13 17 17 C 1.51428 * 117.98672 * 50.28007 * 15 14 13 18 18 C 1.53379 * 108.11663 * 310.89779 * 17 15 14 19 19 C 1.46799 * 111.00068 * 165.12736 * 13 2 1 20 20 H 1.09002 * 109.40077 * 69.32293 * 19 13 2 21 21 C 1.53000 * 109.39742 * 309.58743 * 19 13 2 22 22 H 1.08992 * 109.47622 * 185.83855 * 1 2 3 23 23 H 1.09006 * 109.46498 * 65.83837 * 1 2 3 24 24 H 1.08996 * 109.47172 * 305.84673 * 1 2 3 25 25 H 1.09001 * 109.46871 * 307.68394 * 4 2 1 26 26 H 1.09003 * 109.46937 * 67.68566 * 4 2 1 27 27 H 0.97001 * 120.00264 * 179.97438 * 8 7 5 28 28 H 1.08996 * 109.62680 * 299.46394 * 14 13 2 29 29 H 1.09002 * 109.61716 * 60.02824 * 14 13 2 30 30 H 1.09000 * 109.72648 * 191.24404 * 17 15 14 31 31 H 1.08998 * 109.73120 * 70.55769 * 17 15 14 32 32 H 1.08994 * 109.52460 * 292.56671 * 18 17 15 33 33 H 1.08998 * 109.52052 * 172.36189 * 18 17 15 34 34 H 1.08998 * 109.47196 * 67.05982 * 21 19 13 35 35 H 1.09005 * 109.46816 * 187.06169 * 21 19 13 36 36 H 1.09000 * 109.47008 * 307.05363 * 21 19 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7213 1.2494 5 6 3.5349 -0.5590 1.3481 6 1 4.0563 0.0775 0.6485 7 6 4.2369 -1.2230 2.3315 8 7 3.6021 -1.9984 3.1831 9 14 6.0900 -1.0213 2.4543 10 1 6.4181 0.4088 2.6828 11 1 6.6024 -1.8343 3.5865 12 1 6.7225 -1.4786 1.1909 13 7 2.0196 -0.6926 -1.1994 14 6 1.7676 -2.1392 -1.1126 15 6 2.2860 -2.7944 -2.3743 16 8 1.5937 -3.5509 -3.0120 17 6 3.6992 -2.4728 -2.8128 18 6 3.8700 -0.9487 -2.7917 19 6 3.4438 -0.4152 -1.4225 20 1 4.0334 -0.9011 -0.6450 21 6 3.6818 1.0952 -1.3690 22 1 -0.3634 -1.0222 0.1045 23 1 -0.3632 0.4207 -0.9377 24 1 -0.3633 0.6018 0.8330 25 1 1.5686 -0.2929 2.1339 26 1 1.7931 -1.7810 1.1833 27 1 4.0960 -2.4659 3.8748 28 1 2.2868 -2.5500 -0.2468 29 1 0.6965 -2.3192 -1.0201 30 1 3.8654 -2.8479 -3.8227 31 1 4.4109 -2.9325 -2.1271 32 1 3.2477 -0.5017 -3.5669 33 1 4.9151 -0.6968 -2.9718 34 1 3.5054 1.4552 -0.3554 35 1 4.7105 1.3114 -1.6575 36 1 2.9991 1.5952 -2.0561 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000885707511.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:37:59 Heat of formation + Delta-G solvation = -52.790246 kcal Electronic energy + Delta-G solvation = -16848.433102 eV Core-core repulsion = 14331.886217 eV Total energy + Delta-G solvation = -2516.546885 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.23768 -39.29840 -35.67751 -34.43780 -32.21967 -31.27157 -29.33112 -26.99097 -25.43172 -24.87287 -22.16740 -20.87162 -19.75488 -18.41569 -17.48972 -16.79443 -16.34356 -16.10455 -15.71733 -15.28994 -14.95260 -14.61120 -14.03371 -13.78601 -13.72805 -13.46369 -13.18256 -12.92913 -12.76228 -12.50406 -12.40740 -12.35449 -12.06151 -11.86050 -11.61297 -11.50083 -11.08858 -10.83569 -10.47710 -10.42955 -8.92978 -8.13478 -6.18671 0.90307 1.42504 1.43726 1.50110 2.43470 3.04402 3.20803 3.30524 3.83860 4.02965 4.08787 4.36133 4.42085 4.54655 4.62194 4.67238 4.74253 4.82599 4.90166 4.95899 5.04037 5.08549 5.15395 5.19009 5.24994 5.33075 5.39533 5.58243 5.65512 5.69591 5.86927 6.21898 6.29679 6.42074 6.48808 6.95048 7.46886 8.98041 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.023063 B = 0.011282 C = 0.010225 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1213.752292 B = 2481.156433 C = 2737.818148 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.078 3.922 3 H 0.088 0.912 4 C -0.004 4.004 5 C -0.527 4.527 6 H 0.095 0.905 7 C 0.003 3.997 8 N -0.936 5.936 9 Si 0.944 3.056 10 H -0.268 1.268 11 H -0.297 1.297 12 H -0.259 1.259 13 N -0.501 5.501 14 C 0.003 3.997 15 C 0.378 3.622 16 O -0.499 6.499 17 C -0.166 4.166 18 C -0.096 4.096 19 C 0.045 3.955 20 H 0.069 0.931 21 C -0.141 4.141 22 H 0.038 0.962 23 H 0.068 0.932 24 H 0.058 0.942 25 H -0.015 1.015 26 H 0.002 0.998 27 H 0.257 0.743 28 H 0.066 0.934 29 H 0.084 0.916 30 H 0.103 0.897 31 H 0.102 0.898 32 H 0.075 0.925 33 H 0.099 0.901 34 H 0.052 0.948 35 H 0.072 0.928 36 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.725 4.257 -10.267 11.247 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.030 4.030 3 H 0.106 0.894 4 C -0.042 4.042 5 C -0.565 4.565 6 H 0.112 0.888 7 C -0.195 4.195 8 N -0.577 5.577 9 Si 0.769 3.231 10 H -0.193 1.193 11 H -0.223 1.223 12 H -0.183 1.183 13 N -0.228 5.228 14 C -0.126 4.126 15 C 0.256 3.744 16 O -0.374 6.374 17 C -0.203 4.203 18 C -0.134 4.134 19 C -0.063 4.063 20 H 0.086 0.914 21 C -0.198 4.198 22 H 0.057 0.943 23 H 0.087 0.913 24 H 0.077 0.923 25 H 0.004 0.996 26 H 0.020 0.980 27 H 0.066 0.934 28 H 0.084 0.916 29 H 0.102 0.898 30 H 0.121 0.879 31 H 0.120 0.880 32 H 0.093 0.907 33 H 0.118 0.882 34 H 0.071 0.929 35 H 0.091 0.909 36 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 1.130 3.938 -10.877 11.623 hybrid contribution 1.081 -0.673 1.706 2.129 sum 2.211 3.265 -9.171 9.983 Atomic orbital electron populations 1.21774 0.94802 1.00912 1.01757 1.21837 0.94674 0.98400 0.88056 0.89417 1.19723 0.95852 0.95235 0.93373 1.22047 0.93370 1.27142 1.13913 0.88770 1.25852 1.02522 0.95417 0.95673 1.70113 1.37421 1.31461 1.18664 0.85810 0.80939 0.78355 0.77957 1.19268 1.22317 1.18329 1.62696 1.17816 1.05282 1.36956 1.22789 1.01902 0.91466 0.96398 1.25225 0.90024 0.75612 0.83507 1.90331 1.61344 1.31702 1.54038 1.22389 0.94106 0.99683 1.04158 1.21620 1.03100 0.91776 0.96889 1.22235 0.88786 0.97833 0.97445 0.91368 1.21891 1.02103 0.93969 1.01840 0.94268 0.91342 0.92305 0.99649 0.97994 0.93396 0.91647 0.89799 0.87890 0.87983 0.90657 0.88243 0.92892 0.90934 0.91568 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.49 9.09 71.98 0.65 -3.84 16 2 C 0.08 2.96 2.34 44.92 0.11 3.07 16 3 H 0.09 3.24 5.48 -2.39 -0.01 3.22 16 4 C 0.00 -0.18 4.00 29.85 0.12 -0.06 16 5 C -0.53 -26.27 6.87 25.60 0.18 -26.09 16 6 H 0.09 4.27 3.53 -2.91 -0.01 4.26 16 7 C 0.00 0.15 5.46 84.65 0.46 0.61 16 8 N -0.94 -54.58 13.29 21.45 0.28 -54.29 16 9 Si 0.94 41.20 29.54 68.60 2.03 43.22 16 10 H -0.27 -11.26 7.11 99.48 0.71 -10.55 16 11 H -0.30 -13.32 7.11 99.48 0.71 -12.61 16 12 H -0.26 -10.52 7.11 99.48 0.71 -9.81 16 13 N -0.50 -17.62 4.44 -848.92 -3.77 -21.38 16 14 C 0.00 0.11 4.78 85.71 0.41 0.52 16 15 C 0.38 13.06 6.87 29.53 0.20 13.26 16 16 O -0.50 -19.53 17.90 -1.45 -0.03 -19.56 16 17 C -0.17 -4.49 6.24 30.21 0.19 -4.30 16 18 C -0.10 -2.43 5.40 30.73 0.17 -2.26 16 19 C 0.04 1.44 1.67 44.94 0.08 1.52 16 20 H 0.07 2.66 5.00 -2.39 -0.01 2.64 16 21 C -0.14 -4.00 7.73 71.98 0.56 -3.44 16 22 H 0.04 1.35 6.97 -2.39 -0.02 1.33 16 23 H 0.07 2.02 8.14 -2.38 -0.02 2.00 16 24 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 25 H -0.01 -0.80 8.13 -2.39 -0.02 -0.82 16 26 H 0.00 0.10 5.85 -2.39 -0.01 0.08 16 27 H 0.26 14.46 8.31 -92.71 -0.77 13.69 16 28 H 0.07 2.87 6.05 -2.39 -0.01 2.86 16 29 H 0.08 3.18 6.79 -2.39 -0.02 3.16 16 30 H 0.10 2.39 8.14 -2.39 -0.02 2.37 16 31 H 0.10 2.71 8.14 -2.39 -0.02 2.69 16 32 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 33 H 0.10 2.02 8.14 -2.39 -0.02 2.00 16 34 H 0.05 1.72 5.09 -2.39 -0.01 1.71 16 35 H 0.07 1.74 8.13 -2.38 -0.02 1.72 16 36 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 Total: -1.00 -60.47 273.27 2.70 -57.77 By element: Atomic # 1 Polarization: 14.20 SS G_CDS: 1.07 Total: 15.26 kcal Atomic # 6 Polarization: -24.13 SS G_CDS: 3.12 Total: -21.02 kcal Atomic # 7 Polarization: -72.20 SS G_CDS: -3.48 Total: -75.68 kcal Atomic # 8 Polarization: -19.53 SS G_CDS: -0.03 Total: -19.56 kcal Atomic # 14 Polarization: 41.20 SS G_CDS: 2.03 Total: 43.22 kcal Total: -60.47 2.70 -57.77 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885707511.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.975 kcal (2) G-P(sol) polarization free energy of solvation -60.467 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.492 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.702 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.765 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.790 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds