Wall clock time and date at job start Mon Mar 30 2020 03:05:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09006 * 109.47088 * 2 1 4 4 C 1.50698 * 109.47166 * 240.00037 * 2 1 3 5 5 H 1.07999 * 119.99917 * 239.99684 * 4 2 1 6 6 C 1.37882 * 120.00012 * 59.99969 * 4 2 1 7 7 N 1.31514 * 120.00074 * 359.97438 * 6 4 2 8 8 Si 1.86800 * 119.99872 * 179.97438 * 6 4 2 9 9 H 1.48497 * 109.47081 * 0.02562 * 8 6 4 10 10 H 1.48503 * 109.46875 * 119.99845 * 8 6 4 11 11 H 1.48497 * 109.47440 * 239.99668 * 8 6 4 12 12 N 1.46900 * 109.47160 * 120.00016 * 2 1 3 13 13 C 1.48616 * 110.99823 * 179.87724 * 12 2 1 14 14 C 1.54562 * 104.64347 * 201.27501 * 13 12 2 15 15 H 1.08995 * 110.38451 * 264.93768 * 14 13 12 16 16 C 1.53002 * 110.38249 * 142.56957 * 14 13 12 17 17 O 1.42901 * 109.46585 * 66.45752 * 16 14 13 18 18 C 1.53627 * 104.75325 * 23.75239 * 14 13 12 19 19 C 1.52280 * 121.47729 * 143.71809 * 18 14 13 20 20 C 1.52296 * 121.44907 * 215.95525 * 18 14 13 21 21 C 1.48726 * 110.99935 * 64.28830 * 12 2 1 22 22 H 1.09006 * 109.47088 * 180.02562 * 1 2 3 23 23 H 1.08995 * 109.47321 * 299.99614 * 1 2 3 24 24 H 1.08996 * 109.47260 * 60.00114 * 1 2 3 25 25 H 0.96994 * 119.99694 * 180.02562 * 7 6 4 26 26 H 1.08997 * 110.40549 * 320.06328 * 13 12 2 27 27 H 1.08997 * 110.40812 * 82.48739 * 13 12 2 28 28 H 1.09003 * 109.46659 * 186.45615 * 16 14 13 29 29 H 1.09000 * 109.47165 * 306.45643 * 16 14 13 30 30 H 0.96706 * 113.99461 * 179.97438 * 17 16 14 31 31 H 1.09003 * 117.51659 * 218.26491 * 19 18 14 32 32 H 1.08998 * 117.52017 * 3.38833 * 19 18 14 33 33 H 1.09000 * 117.51984 * 356.56213 * 20 18 14 34 34 H 1.09001 * 117.51925 * 141.68944 * 20 18 14 35 35 H 1.09001 * 110.44741 * 277.19136 * 21 12 2 36 36 H 1.08999 * 110.45256 * 39.74449 * 21 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.6533 -1.5884 -1.1313 6 6 1.6992 -0.2393 -2.4828 7 7 0.9427 0.8297 -2.6034 8 14 2.3225 -1.1195 -4.0079 9 1 3.1474 -2.2863 -3.6037 10 1 1.1678 -1.5866 -4.8165 11 1 3.1472 -0.1858 -4.8161 12 7 2.0197 -0.6925 1.1994 13 6 3.5053 -0.7149 1.2322 14 6 3.8577 -1.8864 2.1768 15 1 4.0241 -1.5204 3.1899 16 6 5.0948 -2.6284 1.6670 17 8 6.2340 -1.7699 1.7528 18 6 2.6276 -2.8058 2.1355 19 6 2.7653 -4.3213 2.1924 20 6 2.1565 -3.5588 3.3726 21 6 1.6294 -2.1275 1.1830 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3634 0.5137 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 0.7081 1.1608 -3.4844 26 1 3.9047 -0.8978 0.2347 27 1 3.8908 0.2235 1.6307 28 1 5.2624 -3.5166 2.2762 29 1 4.9395 -2.9235 0.6293 30 1 7.0563 -2.1758 1.4457 31 1 2.0907 -4.9120 1.5725 32 1 3.7670 -4.7315 2.3207 33 1 2.7577 -3.4674 4.2772 34 1 1.0814 -3.6479 3.5290 35 1 0.6102 -2.2492 1.5498 36 1 1.7246 -2.5367 0.1772 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000885707515.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:05:05 Heat of formation + Delta-G solvation = -19.543432 kcal Electronic energy + Delta-G solvation = -16470.469548 eV Core-core repulsion = 13955.364353 eV Total energy + Delta-G solvation = -2515.105195 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.40947 -36.35545 -35.66966 -32.78110 -30.85415 -28.42074 -26.12089 -25.05870 -24.06298 -22.17376 -21.00037 -19.42671 -18.31118 -17.18823 -16.28318 -15.25114 -15.10428 -14.55207 -14.26585 -13.88240 -13.19944 -12.99516 -12.61686 -12.23972 -11.73940 -11.34147 -11.24652 -11.17407 -11.04327 -10.82634 -10.61382 -10.34431 -10.14534 -9.98477 -9.84964 -9.78894 -9.56960 -9.27346 -9.16007 -8.38721 -7.19212 -5.99132 -4.11095 3.25022 3.33590 3.36012 3.99543 4.39201 4.42010 4.90128 5.01757 5.10336 5.26973 5.32829 5.49056 5.55668 5.75988 5.78494 5.85576 6.02278 6.08195 6.23562 6.33242 6.45996 6.64118 6.73258 6.83060 6.90359 6.95217 7.09063 7.19912 7.54099 7.70677 7.79441 7.98074 8.16031 8.24099 8.42864 8.98770 9.55500 11.01565 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.025605 B = 0.009527 C = 0.008466 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1093.270983 B = 2938.319424 C = 3306.717404 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.194 3.806 3 H 0.040 0.960 4 C -0.540 4.540 5 H 0.059 0.941 6 C 0.067 3.933 7 N -0.885 5.885 8 Si 0.887 3.113 9 H -0.275 1.275 10 H -0.284 1.284 11 H -0.284 1.284 12 N -0.512 5.512 13 C 0.051 3.949 14 C -0.056 4.056 15 H 0.077 0.923 16 C 0.086 3.914 17 O -0.571 6.571 18 C -0.117 4.117 19 C -0.179 4.179 20 C -0.166 4.166 21 C 0.074 3.926 22 H 0.024 0.976 23 H 0.014 0.986 24 H 0.083 0.917 25 H 0.260 0.740 26 H 0.061 0.939 27 H 0.065 0.935 28 H 0.039 0.961 29 H 0.048 0.952 30 H 0.373 0.627 31 H 0.093 0.907 32 H 0.090 0.910 33 H 0.089 0.911 34 H 0.093 0.907 35 H 0.064 0.936 36 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.181 -8.291 7.679 12.432 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.087 3.913 3 H 0.058 0.942 4 C -0.579 4.579 5 H 0.077 0.923 6 C -0.135 4.135 7 N -0.524 5.524 8 Si 0.715 3.285 9 H -0.200 1.200 10 H -0.210 1.210 11 H -0.210 1.210 12 N -0.236 5.236 13 C -0.077 4.077 14 C -0.075 4.075 15 H 0.095 0.905 16 C 0.008 3.992 17 O -0.375 6.375 18 C -0.118 4.118 19 C -0.216 4.216 20 C -0.202 4.202 21 C -0.054 4.054 22 H 0.043 0.957 23 H 0.033 0.967 24 H 0.102 0.898 25 H 0.070 0.930 26 H 0.079 0.921 27 H 0.084 0.916 28 H 0.057 0.943 29 H 0.066 0.934 30 H 0.219 0.781 31 H 0.112 0.888 32 H 0.108 0.892 33 H 0.107 0.893 34 H 0.112 0.888 35 H 0.083 0.917 36 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 4.395 -7.432 8.221 11.922 hybrid contribution 1.029 -1.329 -1.913 2.546 sum 5.424 -8.761 6.308 12.082 Atomic orbital electron populations 1.21742 0.97657 0.99022 1.00242 1.19397 0.92517 0.94564 0.84776 0.94231 1.21710 1.31693 1.12856 0.91642 0.92319 1.24916 0.94871 0.94848 0.98858 1.69894 1.36422 1.22753 1.23306 0.86627 0.78693 0.79749 0.83467 1.19958 1.21003 1.20980 1.65792 1.07041 1.10210 1.40521 1.22924 0.90424 0.96260 0.98096 1.21312 0.90585 0.95254 1.00376 0.90504 1.22284 0.85811 0.91715 0.99419 1.86513 1.18679 1.43667 1.88661 1.21712 0.98092 0.91873 1.00085 1.22909 1.01914 0.94360 1.02410 1.22862 1.00845 1.04266 0.92277 1.22435 0.95950 0.89962 0.97099 0.95677 0.96681 0.89818 0.92961 0.92116 0.91629 0.94296 0.93360 0.78118 0.88834 0.89190 0.89300 0.88829 0.91725 0.91654 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.18 8.93 37.16 0.33 -2.85 16 2 C 0.19 4.97 2.45 -68.87 -0.17 4.80 16 3 H 0.04 1.12 8.14 -51.93 -0.42 0.70 16 4 C -0.54 -14.52 6.49 -34.44 -0.22 -14.74 16 5 H 0.06 1.58 5.71 -52.49 -0.30 1.28 16 6 C 0.07 1.85 5.30 -17.82 -0.09 1.75 16 7 N -0.89 -25.15 11.32 55.43 0.63 -24.52 16 8 Si 0.89 21.15 29.54 -169.99 -5.02 16.12 16 9 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 10 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 11 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 12 N -0.51 -11.45 5.40 -223.50 -1.21 -12.66 16 13 C 0.05 1.07 5.70 -2.05 -0.01 1.06 16 14 C -0.06 -0.97 3.23 -89.47 -0.29 -1.26 16 15 H 0.08 1.31 8.14 -51.93 -0.42 0.89 16 16 C 0.09 1.27 5.77 37.16 0.21 1.48 16 17 O -0.57 -8.36 13.49 -35.23 -0.48 -8.83 16 18 C -0.12 -1.93 2.32 -154.52 -0.36 -2.29 16 19 C -0.18 -2.42 9.66 -27.03 -0.26 -2.68 16 20 C -0.17 -2.27 10.27 -27.02 -0.28 -2.55 16 21 C 0.07 1.48 5.06 -2.42 -0.01 1.47 16 22 H 0.02 0.59 7.07 -51.93 -0.37 0.22 16 23 H 0.01 0.33 8.14 -51.93 -0.42 -0.09 16 24 H 0.08 2.25 6.07 -51.93 -0.32 1.93 16 25 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 26 H 0.06 1.39 5.89 -51.93 -0.31 1.09 16 27 H 0.07 1.38 8.14 -51.93 -0.42 0.95 16 28 H 0.04 0.49 6.71 -51.93 -0.35 0.14 16 29 H 0.05 0.75 8.06 -51.93 -0.42 0.34 16 30 H 0.37 3.55 9.12 45.56 0.42 3.97 16 31 H 0.09 1.23 8.14 -51.93 -0.42 0.81 16 32 H 0.09 1.09 6.56 -51.93 -0.34 0.74 16 33 H 0.09 1.11 8.14 -51.93 -0.42 0.69 16 34 H 0.09 1.23 8.14 -51.93 -0.42 0.81 16 35 H 0.06 1.27 7.70 -51.93 -0.40 0.87 16 36 H 0.07 1.45 5.92 -51.93 -0.31 1.15 16 LS Contribution 280.35 15.07 4.22 4.22 Total: -1.00 -29.27 280.35 -7.78 -37.05 By element: Atomic # 1 Polarization: 9.20 SS G_CDS: -4.78 Total: 4.42 kcal Atomic # 6 Polarization: -14.66 SS G_CDS: -1.15 Total: -15.81 kcal Atomic # 7 Polarization: -36.60 SS G_CDS: -0.58 Total: -37.18 kcal Atomic # 8 Polarization: -8.36 SS G_CDS: -0.48 Total: -8.83 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.12 kcal Total LS contribution 4.22 Total: 4.22 kcal Total: -29.27 -7.78 -37.05 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885707515.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.509 kcal (2) G-P(sol) polarization free energy of solvation -29.270 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.761 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.782 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.052 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.543 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds