Wall clock time and date at job start Mon Mar 30 2020 03:05:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09006 * 109.47088 * 2 1 4 4 C 1.50698 * 109.47166 * 240.00037 * 2 1 3 5 5 H 1.07999 * 119.99917 * 239.99684 * 4 2 1 6 6 C 1.37882 * 120.00012 * 59.99969 * 4 2 1 7 7 N 1.31514 * 120.00074 * 359.97438 * 6 4 2 8 8 Si 1.86800 * 119.99872 * 179.97438 * 6 4 2 9 9 H 1.48497 * 109.47081 * 0.02562 * 8 6 4 10 10 H 1.48503 * 109.46875 * 119.99845 * 8 6 4 11 11 H 1.48497 * 109.47440 * 239.99668 * 8 6 4 12 12 N 1.46900 * 109.47160 * 120.00016 * 2 1 3 13 13 C 1.48616 * 110.99823 * 179.87724 * 12 2 1 14 14 C 1.54562 * 104.64347 * 201.27501 * 13 12 2 15 15 H 1.08995 * 110.38451 * 264.93768 * 14 13 12 16 16 C 1.53002 * 110.38249 * 142.56957 * 14 13 12 17 17 O 1.42901 * 109.46585 * 66.45752 * 16 14 13 18 18 C 1.53627 * 104.75325 * 23.75239 * 14 13 12 19 19 C 1.52280 * 121.47729 * 143.71809 * 18 14 13 20 20 C 1.52296 * 121.44907 * 215.95525 * 18 14 13 21 21 C 1.48726 * 110.99935 * 64.28830 * 12 2 1 22 22 H 1.09006 * 109.47088 * 180.02562 * 1 2 3 23 23 H 1.08995 * 109.47321 * 299.99614 * 1 2 3 24 24 H 1.08996 * 109.47260 * 60.00114 * 1 2 3 25 25 H 0.96994 * 119.99694 * 180.02562 * 7 6 4 26 26 H 1.08997 * 110.40549 * 320.06328 * 13 12 2 27 27 H 1.08997 * 110.40812 * 82.48739 * 13 12 2 28 28 H 1.09003 * 109.46659 * 186.45615 * 16 14 13 29 29 H 1.09000 * 109.47165 * 306.45643 * 16 14 13 30 30 H 0.96706 * 113.99461 * 179.97438 * 17 16 14 31 31 H 1.09003 * 117.51659 * 218.26491 * 19 18 14 32 32 H 1.08998 * 117.52017 * 3.38833 * 19 18 14 33 33 H 1.09000 * 117.51984 * 356.56213 * 20 18 14 34 34 H 1.09001 * 117.51925 * 141.68944 * 20 18 14 35 35 H 1.09001 * 110.44741 * 277.19136 * 21 12 2 36 36 H 1.08999 * 110.45256 * 39.74449 * 21 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.6533 -1.5884 -1.1313 6 6 1.6992 -0.2393 -2.4828 7 7 0.9427 0.8297 -2.6034 8 14 2.3225 -1.1195 -4.0079 9 1 3.1474 -2.2863 -3.6037 10 1 1.1678 -1.5866 -4.8165 11 1 3.1472 -0.1858 -4.8161 12 7 2.0197 -0.6925 1.1994 13 6 3.5053 -0.7149 1.2322 14 6 3.8577 -1.8864 2.1768 15 1 4.0241 -1.5204 3.1899 16 6 5.0948 -2.6284 1.6670 17 8 6.2340 -1.7699 1.7528 18 6 2.6276 -2.8058 2.1355 19 6 2.7653 -4.3213 2.1924 20 6 2.1565 -3.5588 3.3726 21 6 1.6294 -2.1275 1.1830 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3634 0.5137 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 0.7081 1.1608 -3.4844 26 1 3.9047 -0.8978 0.2347 27 1 3.8908 0.2235 1.6307 28 1 5.2624 -3.5166 2.2762 29 1 4.9395 -2.9235 0.6293 30 1 7.0563 -2.1758 1.4457 31 1 2.0907 -4.9120 1.5725 32 1 3.7670 -4.7315 2.3207 33 1 2.7577 -3.4674 4.2772 34 1 1.0814 -3.6479 3.5290 35 1 0.6102 -2.2492 1.5498 36 1 1.7246 -2.5367 0.1772 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000885707515.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:05:05 Heat of formation + Delta-G solvation = -41.122513 kcal Electronic energy + Delta-G solvation = -16471.405287 eV Core-core repulsion = 13955.364353 eV Total energy + Delta-G solvation = -2516.040934 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.84200 -37.68724 -37.12032 -34.66514 -32.51594 -30.13632 -27.76691 -27.10192 -25.52132 -23.29845 -22.52007 -21.33284 -19.64655 -18.63939 -17.99519 -17.07186 -16.44973 -16.07019 -15.72324 -15.25130 -14.95508 -14.50686 -14.26887 -13.81992 -13.56467 -13.11654 -12.92075 -12.78063 -12.64139 -12.32659 -12.24888 -12.01726 -11.85533 -11.69139 -11.59208 -11.26114 -11.10503 -10.79933 -10.55399 -10.47187 -9.06877 -8.07810 -6.28280 1.35054 1.37170 1.47327 2.38028 2.84053 3.12764 3.31458 3.54304 3.65768 3.80978 4.13226 4.20473 4.30871 4.46552 4.54999 4.70228 4.72804 4.83283 4.85794 4.98073 5.00296 5.07401 5.12372 5.16163 5.17500 5.31184 5.32301 5.36522 5.49270 5.63612 5.94499 6.12876 6.31479 6.42551 6.90656 6.94045 7.41432 8.90654 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.025605 B = 0.009527 C = 0.008466 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1093.270983 B = 2938.319424 C = 3306.717404 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C 0.198 3.802 3 H 0.000 1.000 4 C -0.544 4.544 5 H 0.055 0.945 6 C 0.017 3.983 7 N -0.914 5.914 8 Si 0.951 3.049 9 H -0.269 1.269 10 H -0.278 1.278 11 H -0.282 1.282 12 N -0.518 5.518 13 C 0.051 3.949 14 C -0.048 4.048 15 H 0.080 0.920 16 C 0.092 3.908 17 O -0.590 6.590 18 C -0.143 4.143 19 C -0.159 4.159 20 C -0.149 4.149 21 C 0.077 3.923 22 H 0.030 0.970 23 H 0.026 0.974 24 H 0.060 0.940 25 H 0.262 0.738 26 H 0.034 0.966 27 H 0.053 0.947 28 H 0.073 0.927 29 H 0.036 0.964 30 H 0.395 0.605 31 H 0.097 0.903 32 H 0.113 0.887 33 H 0.108 0.892 34 H 0.099 0.901 35 H 0.065 0.935 36 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.077 -10.609 8.620 14.960 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.090 3.910 3 H 0.018 0.982 4 C -0.583 4.583 5 H 0.073 0.927 6 C -0.182 4.182 7 N -0.554 5.554 8 Si 0.776 3.224 9 H -0.193 1.193 10 H -0.204 1.204 11 H -0.207 1.207 12 N -0.241 5.241 13 C -0.077 4.077 14 C -0.067 4.067 15 H 0.098 0.902 16 C 0.014 3.986 17 O -0.398 6.398 18 C -0.144 4.144 19 C -0.196 4.196 20 C -0.186 4.186 21 C -0.051 4.051 22 H 0.049 0.951 23 H 0.045 0.955 24 H 0.079 0.921 25 H 0.071 0.929 26 H 0.052 0.948 27 H 0.072 0.928 28 H 0.091 0.909 29 H 0.054 0.946 30 H 0.245 0.755 31 H 0.116 0.884 32 H 0.131 0.869 33 H 0.126 0.874 34 H 0.117 0.883 35 H 0.083 0.917 36 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 5.310 -9.767 9.170 14.411 hybrid contribution 0.757 -0.564 -2.164 2.361 sum 6.067 -10.331 7.006 13.879 Atomic orbital electron populations 1.21562 0.97143 0.99074 0.99645 1.19191 0.92902 0.92866 0.86060 0.98161 1.21860 1.31429 1.12629 0.92370 0.92719 1.25681 0.95164 0.95598 1.01770 1.70018 1.37392 1.23956 1.23996 0.85620 0.78240 0.78708 0.79785 1.19328 1.20404 1.20750 1.65683 1.08135 1.11879 1.38425 1.22877 0.89317 0.97758 0.97765 1.21218 0.92222 0.94015 0.99287 0.90156 1.22185 0.84976 0.92245 0.99189 1.86459 1.19806 1.44659 1.88891 1.21547 0.96953 0.93802 1.02075 1.23038 1.03275 0.91664 1.01652 1.22986 1.01647 1.01820 0.92112 1.22337 0.97230 0.88560 0.96942 0.95129 0.95503 0.92076 0.92857 0.94787 0.92829 0.90889 0.94582 0.75530 0.88436 0.86909 0.87393 0.88297 0.91703 0.94269 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.89 8.93 71.98 0.64 -5.25 16 2 C 0.20 10.49 2.45 44.17 0.11 10.60 16 3 H 0.00 0.03 8.14 -2.38 -0.02 0.01 16 4 C -0.54 -30.02 6.49 25.60 0.17 -29.86 16 5 H 0.05 3.01 5.71 -2.91 -0.02 3.00 16 6 C 0.02 0.97 5.30 84.66 0.45 1.42 16 7 N -0.91 -53.21 11.32 21.45 0.24 -52.97 16 8 Si 0.95 43.82 29.54 68.60 2.03 45.84 16 9 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 10 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 11 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 12 N -0.52 -23.65 5.40 -861.03 -4.65 -28.30 16 13 C 0.05 2.18 5.70 86.50 0.49 2.67 16 14 C -0.05 -1.59 3.23 -10.05 -0.03 -1.62 16 15 H 0.08 2.57 8.14 -2.39 -0.02 2.55 16 16 C 0.09 2.50 5.77 71.98 0.42 2.91 16 17 O -0.59 -16.10 13.49 -148.98 -2.01 -18.11 16 18 C -0.14 -4.43 2.32 -52.19 -0.12 -4.55 16 19 C -0.16 -3.71 9.66 30.40 0.29 -3.41 16 20 C -0.15 -3.52 10.27 30.41 0.31 -3.21 16 21 C 0.08 3.09 5.06 86.20 0.44 3.53 16 22 H 0.03 1.46 7.07 -2.38 -0.02 1.44 16 23 H 0.03 1.24 8.14 -2.39 -0.02 1.22 16 24 H 0.06 3.38 6.07 -2.39 -0.01 3.37 16 25 H 0.26 14.45 8.31 -92.71 -0.77 13.68 16 26 H 0.03 1.61 5.89 -2.39 -0.01 1.60 16 27 H 0.05 2.33 8.14 -2.39 -0.02 2.31 16 28 H 0.07 1.51 6.71 -2.39 -0.02 1.50 16 29 H 0.04 1.07 8.06 -2.39 -0.02 1.05 16 30 H 0.40 6.57 9.12 -74.05 -0.68 5.89 16 31 H 0.10 2.22 8.14 -2.39 -0.02 2.20 16 32 H 0.11 2.14 6.56 -2.39 -0.02 2.12 16 33 H 0.11 2.19 8.14 -2.39 -0.02 2.17 16 34 H 0.10 2.26 8.14 -2.39 -0.02 2.24 16 35 H 0.06 2.52 7.70 -2.39 -0.02 2.51 16 36 H 0.04 1.76 5.92 -2.39 -0.01 1.74 16 Total: -1.00 -64.11 280.35 -0.83 -64.95 By element: Atomic # 1 Polarization: 14.97 SS G_CDS: 0.39 Total: 15.36 kcal Atomic # 6 Polarization: -29.93 SS G_CDS: 3.16 Total: -26.77 kcal Atomic # 7 Polarization: -76.86 SS G_CDS: -4.41 Total: -81.27 kcal Atomic # 8 Polarization: -16.10 SS G_CDS: -2.01 Total: -18.11 kcal Atomic # 14 Polarization: 43.82 SS G_CDS: 2.03 Total: 45.84 kcal Total: -64.11 -0.83 -64.95 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885707515.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.826 kcal (2) G-P(sol) polarization free energy of solvation -64.114 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.288 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.835 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.949 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.123 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds