Wall clock time and date at job start Mon Mar 30 2020 03:05:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08995 * 109.47106 * 2 1 4 4 C 1.50702 * 109.46995 * 120.00237 * 2 1 3 5 5 H 1.08001 * 119.99976 * 120.00130 * 4 2 1 6 6 C 1.37878 * 119.99915 * 300.00325 * 4 2 1 7 7 N 1.31515 * 119.99678 * 180.02562 * 6 4 2 8 8 Si 1.86800 * 119.99939 * 359.97438 * 6 4 2 9 9 H 1.48501 * 109.46845 * 90.00742 * 8 6 4 10 10 H 1.48500 * 109.46939 * 210.00447 * 8 6 4 11 11 H 1.48494 * 109.47347 * 330.00852 * 8 6 4 12 12 N 1.46900 * 109.46999 * 240.00051 * 2 1 3 13 13 C 1.48622 * 110.99890 * 63.20401 * 12 2 1 14 14 C 1.54559 * 104.64060 * 158.72269 * 13 12 2 15 15 H 1.09003 * 110.38284 * 95.06487 * 14 13 12 16 16 C 1.53000 * 110.38279 * 217.42338 * 14 13 12 17 17 O 1.42899 * 109.47257 * 290.33421 * 16 14 13 18 18 C 1.53623 * 104.76039 * 336.24640 * 14 13 12 19 19 C 1.52284 * 121.48797 * 216.26128 * 18 14 13 20 20 C 1.52438 * 121.44086 * 144.05629 * 18 14 13 21 21 C 1.48732 * 110.99769 * 178.78722 * 12 2 1 22 22 H 1.09005 * 109.47064 * 65.62095 * 1 2 3 23 23 H 1.09003 * 109.47210 * 185.61666 * 1 2 3 24 24 H 1.08997 * 109.47429 * 305.61979 * 1 2 3 25 25 H 0.97003 * 119.99386 * 179.97438 * 7 6 4 26 26 H 1.08994 * 110.40134 * 277.51175 * 13 12 2 27 27 H 1.08996 * 110.40441 * 39.82103 * 13 12 2 28 28 H 1.09003 * 109.46640 * 50.34003 * 16 14 13 29 29 H 1.09004 * 109.47123 * 170.33158 * 16 14 13 30 30 H 0.96701 * 114.00014 * 179.97438 * 17 16 14 31 31 H 1.08993 * 117.51695 * 141.73644 * 19 18 14 32 32 H 1.08998 * 117.51450 * 356.65580 * 19 18 14 33 33 H 1.09000 * 117.50845 * 3.45240 * 20 18 14 34 34 H 1.09001 * 117.58742 * 218.26970 * 20 18 14 35 35 H 1.08993 * 110.45197 * 82.80013 * 21 12 2 36 36 H 1.09002 * 110.44667 * 320.25262 * 21 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 1.2305 5 1 2.6532 -1.5886 1.1313 6 6 1.6991 -0.2395 2.4827 7 7 2.1379 -0.8592 3.5565 8 14 0.6257 1.2797 2.6541 9 1 -0.8022 0.8742 2.6993 10 1 0.9770 1.9952 3.9071 11 1 0.8489 2.1771 1.4923 12 7 2.0196 -0.6925 -1.1994 13 6 1.6074 0.0248 -2.4341 14 6 2.6016 -0.4558 -3.5155 15 1 2.1778 -1.2878 -4.0780 16 6 2.9633 0.6953 -4.4562 17 8 1.8287 1.0299 -5.2579 18 6 3.8402 -0.9157 -2.7318 19 6 5.2480 -0.6992 -3.2706 20 6 4.6675 -2.1138 -3.1836 21 6 3.5061 -0.6869 -1.2486 22 1 -0.3633 0.4242 -0.9361 23 1 -0.3634 -1.0228 0.1006 24 1 -0.3634 0.5985 0.8353 25 1 1.9038 -0.5276 4.4375 26 1 0.5878 -0.2457 -2.7082 27 1 1.6889 1.1025 -2.2927 28 1 3.2625 1.5638 -3.8692 29 1 3.7876 0.3918 -5.1017 30 1 1.9859 1.7541 -5.8791 31 1 6.0248 -0.4289 -2.5554 32 1 5.3453 -0.2549 -4.2611 33 1 4.3823 -2.5993 -4.1169 34 1 5.0631 -2.7739 -2.4117 35 1 3.9104 -1.4943 -0.6382 36 1 3.8945 0.2753 -0.9147 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000885707516.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:05:07 Heat of formation + Delta-G solvation = -11.570291 kcal Electronic energy + Delta-G solvation = -16276.739397 eV Core-core repulsion = 13761.979943 eV Total energy + Delta-G solvation = -2514.759454 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.56017 -36.54536 -35.83696 -32.86726 -31.12079 -29.51541 -26.30242 -24.87302 -24.24979 -22.28826 -21.17982 -19.51444 -18.50151 -17.29846 -16.67169 -15.46538 -15.14363 -14.91880 -14.48640 -13.92535 -13.51064 -13.03221 -12.81229 -12.75872 -12.21979 -11.77046 -11.60751 -11.36070 -11.30028 -10.85800 -10.72914 -10.42852 -10.40865 -10.14778 -10.04207 -9.83841 -9.44392 -9.41532 -9.03206 -8.55256 -7.47716 -6.06086 -4.04453 3.27922 3.36935 3.39032 3.85971 4.24478 4.40749 4.74457 4.79067 4.90380 5.17693 5.24976 5.28371 5.31942 5.54017 5.58932 5.76727 5.79590 5.92764 6.05730 6.25859 6.27589 6.31798 6.34703 6.38265 6.46937 6.55604 6.59483 6.77334 6.81539 7.24589 7.55147 7.59583 7.90572 7.99512 8.65158 9.00821 9.56291 11.06930 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.033194 B = 0.008386 C = 0.007177 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 843.331955 B = 3338.068188 C = 3900.200683 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.172 3.828 3 H -0.001 1.001 4 C -0.504 4.504 5 H 0.081 0.919 6 C 0.070 3.930 7 N -0.900 5.900 8 Si 0.886 3.114 9 H -0.278 1.278 10 H -0.297 1.297 11 H -0.270 1.270 12 N -0.493 5.493 13 C 0.043 3.957 14 C -0.055 4.055 15 H 0.083 0.917 16 C 0.084 3.916 17 O -0.572 6.572 18 C -0.123 4.123 19 C -0.177 4.177 20 C -0.160 4.160 21 C 0.087 3.913 22 H 0.030 0.970 23 H 0.061 0.939 24 H 0.039 0.961 25 H 0.264 0.736 26 H 0.076 0.924 27 H 0.035 0.965 28 H 0.046 0.954 29 H 0.044 0.956 30 H 0.374 0.626 31 H 0.095 0.905 32 H 0.091 0.909 33 H 0.090 0.910 34 H 0.097 0.903 35 H 0.084 0.916 36 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.355 3.464 -15.303 16.045 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.064 3.936 3 H 0.016 0.984 4 C -0.542 4.542 5 H 0.099 0.901 6 C -0.131 4.131 7 N -0.538 5.538 8 Si 0.716 3.284 9 H -0.205 1.205 10 H -0.225 1.225 11 H -0.195 1.195 12 N -0.217 5.217 13 C -0.085 4.085 14 C -0.074 4.074 15 H 0.102 0.898 16 C 0.007 3.993 17 O -0.377 6.377 18 C -0.124 4.124 19 C -0.215 4.215 20 C -0.197 4.197 21 C -0.041 4.041 22 H 0.049 0.951 23 H 0.080 0.920 24 H 0.057 0.943 25 H 0.074 0.926 26 H 0.094 0.906 27 H 0.053 0.947 28 H 0.064 0.936 29 H 0.062 0.938 30 H 0.220 0.780 31 H 0.114 0.886 32 H 0.109 0.891 33 H 0.109 0.891 34 H 0.116 0.884 35 H 0.102 0.898 36 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 2.848 2.434 -14.691 15.161 hybrid contribution -0.040 2.128 -0.027 2.128 sum 2.808 4.562 -14.717 15.662 Atomic orbital electron populations 1.22143 0.98338 1.01481 0.98203 1.19883 0.91785 0.92582 0.89339 0.98394 1.20952 1.31866 1.13540 0.87882 0.90085 1.24915 0.95798 0.96612 0.95812 1.69885 1.45768 1.40296 0.97849 0.86886 0.80909 0.83868 0.76705 1.20490 1.22470 1.19532 1.65379 1.06699 1.48289 1.01363 1.23074 0.98620 0.96090 0.90744 1.21291 0.94417 0.96810 0.94901 0.89820 1.22308 0.87407 0.97174 0.92458 1.86511 1.38323 1.57418 1.55414 1.21731 0.90932 1.02829 0.96903 1.22940 0.96296 1.00193 1.02040 1.22901 1.03340 0.90761 1.02728 1.22303 0.89971 1.00877 0.90912 0.95082 0.91975 0.94259 0.92650 0.90607 0.94700 0.93592 0.93761 0.77958 0.88638 0.89099 0.89123 0.88409 0.89811 0.93904 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.31 8.64 37.16 0.32 -2.98 16 2 C 0.17 4.21 1.41 -68.86 -0.10 4.12 16 3 H 0.00 -0.04 7.04 -51.93 -0.37 -0.40 16 4 C -0.50 -14.33 8.69 -34.44 -0.30 -14.63 16 5 H 0.08 2.50 7.29 -52.49 -0.38 2.12 16 6 C 0.07 2.04 5.45 -17.82 -0.10 1.95 16 7 N -0.90 -27.63 13.96 55.43 0.77 -26.86 16 8 Si 0.89 22.29 24.32 -169.99 -4.13 18.16 16 9 H -0.28 -6.84 6.92 56.52 0.39 -6.45 16 10 H -0.30 -7.44 7.11 56.52 0.40 -7.04 16 11 H -0.27 -6.58 6.53 56.52 0.37 -6.21 16 12 N -0.49 -10.67 5.19 -223.50 -1.16 -11.83 16 13 C 0.04 0.79 4.94 -2.05 -0.01 0.78 16 14 C -0.06 -0.85 3.21 -89.48 -0.29 -1.14 16 15 H 0.08 1.31 8.14 -51.93 -0.42 0.89 16 16 C 0.08 1.06 5.88 37.16 0.22 1.28 16 17 O -0.57 -7.10 13.56 -35.23 -0.48 -7.58 16 18 C -0.12 -1.90 2.32 -154.45 -0.36 -2.26 16 19 C -0.18 -2.20 9.65 -27.02 -0.26 -2.46 16 20 C -0.16 -2.12 10.28 -26.94 -0.28 -2.40 16 21 C 0.09 1.72 5.51 -2.42 -0.01 1.70 16 22 H 0.03 0.62 6.77 -51.93 -0.35 0.27 16 23 H 0.06 1.44 8.14 -51.93 -0.42 1.01 16 24 H 0.04 0.92 3.44 -51.93 -0.18 0.74 16 25 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 26 H 0.08 1.39 7.57 -51.93 -0.39 1.00 16 27 H 0.03 0.65 7.53 -51.93 -0.39 0.26 16 28 H 0.05 0.58 7.98 -51.93 -0.41 0.17 16 29 H 0.04 0.48 6.52 -51.93 -0.34 0.14 16 30 H 0.37 2.75 9.12 45.56 0.42 3.16 16 31 H 0.10 1.16 8.14 -51.93 -0.42 0.73 16 32 H 0.09 0.97 6.48 -51.93 -0.34 0.63 16 33 H 0.09 1.08 8.14 -51.93 -0.42 0.66 16 34 H 0.10 1.30 8.14 -51.93 -0.42 0.88 16 35 H 0.08 1.76 7.48 -51.93 -0.39 1.37 16 36 H 0.04 0.87 7.95 -51.93 -0.41 0.46 16 LS Contribution 277.75 15.07 4.19 4.19 Total: -1.00 -31.51 277.75 -6.80 -38.31 By element: Atomic # 1 Polarization: 6.48 SS G_CDS: -4.83 Total: 1.66 kcal Atomic # 6 Polarization: -14.89 SS G_CDS: -1.16 Total: -16.05 kcal Atomic # 7 Polarization: -38.30 SS G_CDS: -0.39 Total: -38.69 kcal Atomic # 8 Polarization: -7.10 SS G_CDS: -0.48 Total: -7.58 kcal Atomic # 14 Polarization: 22.29 SS G_CDS: -4.13 Total: 18.16 kcal Total LS contribution 4.19 Total: 4.19 kcal Total: -31.51 -6.80 -38.31 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885707516.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.745 kcal (2) G-P(sol) polarization free energy of solvation -31.513 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.768 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.802 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.315 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.570 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds