Wall clock time and date at job start Mon Mar 30 2020 03:05:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08995 * 109.47106 * 2 1 4 4 C 1.50702 * 109.46995 * 120.00237 * 2 1 3 5 5 H 1.08001 * 119.99976 * 120.00130 * 4 2 1 6 6 C 1.37878 * 119.99915 * 300.00325 * 4 2 1 7 7 N 1.31515 * 119.99678 * 180.02562 * 6 4 2 8 8 Si 1.86800 * 119.99939 * 359.97438 * 6 4 2 9 9 H 1.48501 * 109.46845 * 90.00742 * 8 6 4 10 10 H 1.48500 * 109.46939 * 210.00447 * 8 6 4 11 11 H 1.48494 * 109.47347 * 330.00852 * 8 6 4 12 12 N 1.46900 * 109.46999 * 240.00051 * 2 1 3 13 13 C 1.48622 * 110.99890 * 63.20401 * 12 2 1 14 14 C 1.54559 * 104.64060 * 158.72269 * 13 12 2 15 15 H 1.09003 * 110.38284 * 95.06487 * 14 13 12 16 16 C 1.53000 * 110.38279 * 217.42338 * 14 13 12 17 17 O 1.42899 * 109.47257 * 290.33421 * 16 14 13 18 18 C 1.53623 * 104.76039 * 336.24640 * 14 13 12 19 19 C 1.52284 * 121.48797 * 216.26128 * 18 14 13 20 20 C 1.52438 * 121.44086 * 144.05629 * 18 14 13 21 21 C 1.48732 * 110.99769 * 178.78722 * 12 2 1 22 22 H 1.09005 * 109.47064 * 65.62095 * 1 2 3 23 23 H 1.09003 * 109.47210 * 185.61666 * 1 2 3 24 24 H 1.08997 * 109.47429 * 305.61979 * 1 2 3 25 25 H 0.97003 * 119.99386 * 179.97438 * 7 6 4 26 26 H 1.08994 * 110.40134 * 277.51175 * 13 12 2 27 27 H 1.08996 * 110.40441 * 39.82103 * 13 12 2 28 28 H 1.09003 * 109.46640 * 50.34003 * 16 14 13 29 29 H 1.09004 * 109.47123 * 170.33158 * 16 14 13 30 30 H 0.96701 * 114.00014 * 179.97438 * 17 16 14 31 31 H 1.08993 * 117.51695 * 141.73644 * 19 18 14 32 32 H 1.08998 * 117.51450 * 356.65580 * 19 18 14 33 33 H 1.09000 * 117.50845 * 3.45240 * 20 18 14 34 34 H 1.09001 * 117.58742 * 218.26970 * 20 18 14 35 35 H 1.08993 * 110.45197 * 82.80013 * 21 12 2 36 36 H 1.09002 * 110.44667 * 320.25262 * 21 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 1.2305 5 1 2.6532 -1.5886 1.1313 6 6 1.6991 -0.2395 2.4827 7 7 2.1379 -0.8592 3.5565 8 14 0.6257 1.2797 2.6541 9 1 -0.8022 0.8742 2.6993 10 1 0.9770 1.9952 3.9071 11 1 0.8489 2.1771 1.4923 12 7 2.0196 -0.6925 -1.1994 13 6 1.6074 0.0248 -2.4341 14 6 2.6016 -0.4558 -3.5155 15 1 2.1778 -1.2878 -4.0780 16 6 2.9633 0.6953 -4.4562 17 8 1.8287 1.0299 -5.2579 18 6 3.8402 -0.9157 -2.7318 19 6 5.2480 -0.6992 -3.2706 20 6 4.6675 -2.1138 -3.1836 21 6 3.5061 -0.6869 -1.2486 22 1 -0.3633 0.4242 -0.9361 23 1 -0.3634 -1.0228 0.1006 24 1 -0.3634 0.5985 0.8353 25 1 1.9038 -0.5276 4.4375 26 1 0.5878 -0.2457 -2.7082 27 1 1.6889 1.1025 -2.2927 28 1 3.2625 1.5638 -3.8692 29 1 3.7876 0.3918 -5.1017 30 1 1.9859 1.7541 -5.8791 31 1 6.0248 -0.4289 -2.5554 32 1 5.3453 -0.2549 -4.2611 33 1 4.3823 -2.5993 -4.1169 34 1 5.0631 -2.7739 -2.4117 35 1 3.9104 -1.4943 -0.6382 36 1 3.8945 0.2753 -0.9147 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000885707516.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:05:07 Heat of formation + Delta-G solvation = -36.734316 kcal Electronic energy + Delta-G solvation = -16277.830591 eV Core-core repulsion = 13761.979943 eV Total energy + Delta-G solvation = -2515.850648 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.88620 -37.72411 -37.17603 -34.80170 -32.83001 -31.03887 -27.96505 -26.61209 -25.73351 -23.38511 -22.55391 -21.34905 -19.76708 -18.75436 -18.25870 -17.16675 -16.53728 -16.12781 -16.08727 -15.13990 -15.09490 -14.71504 -14.38299 -14.27292 -14.07111 -13.38450 -13.16108 -12.76914 -12.60887 -12.50507 -12.32592 -12.05904 -11.92450 -11.74249 -11.49492 -11.16197 -11.10460 -10.80858 -10.76242 -10.57793 -9.20074 -8.32087 -6.35565 1.27269 1.31192 1.41646 2.28289 2.75323 3.01204 3.27172 3.32123 3.56819 3.71870 4.04774 4.14154 4.21995 4.40522 4.45993 4.49788 4.58992 4.61242 4.63320 4.75381 4.78310 4.82558 4.90816 4.93565 5.00098 5.11432 5.23020 5.26226 5.30767 5.37262 5.60080 5.96249 6.16921 6.59609 6.69638 6.95323 7.29368 8.84626 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.033194 B = 0.008386 C = 0.007177 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 843.331955 B = 3338.068188 C = 3900.200683 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.176 3.824 3 H -0.010 1.010 4 C -0.508 4.508 5 H 0.038 0.962 6 C 0.014 3.986 7 N -0.946 5.946 8 Si 0.948 3.052 9 H -0.264 1.264 10 H -0.294 1.294 11 H -0.255 1.255 12 N -0.512 5.512 13 C 0.043 3.957 14 C -0.049 4.049 15 H 0.082 0.918 16 C 0.092 3.908 17 O -0.589 6.589 18 C -0.143 4.143 19 C -0.151 4.151 20 C -0.157 4.157 21 C 0.088 3.912 22 H 0.060 0.940 23 H 0.052 0.948 24 H 0.037 0.963 25 H 0.267 0.733 26 H 0.075 0.925 27 H 0.033 0.967 28 H 0.045 0.955 29 H 0.072 0.928 30 H 0.397 0.603 31 H 0.096 0.904 32 H 0.121 0.879 33 H 0.111 0.889 34 H 0.089 0.911 35 H 0.053 0.947 36 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.084 4.943 -17.928 18.851 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.067 3.933 3 H 0.007 0.993 4 C -0.547 4.547 5 H 0.056 0.944 6 C -0.183 4.183 7 N -0.586 5.586 8 Si 0.775 3.225 9 H -0.190 1.190 10 H -0.221 1.221 11 H -0.179 1.179 12 N -0.236 5.236 13 C -0.085 4.085 14 C -0.068 4.068 15 H 0.101 0.899 16 C 0.014 3.986 17 O -0.398 6.398 18 C -0.144 4.144 19 C -0.188 4.188 20 C -0.194 4.194 21 C -0.040 4.040 22 H 0.079 0.921 23 H 0.072 0.928 24 H 0.055 0.945 25 H 0.076 0.924 26 H 0.094 0.906 27 H 0.051 0.949 28 H 0.063 0.937 29 H 0.090 0.910 30 H 0.247 0.753 31 H 0.115 0.885 32 H 0.139 0.861 33 H 0.129 0.871 34 H 0.107 0.893 35 H 0.071 0.929 36 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges 2.580 3.921 -17.356 17.980 hybrid contribution 0.109 1.576 0.777 1.760 sum 2.689 5.498 -16.580 17.673 Atomic orbital electron populations 1.22047 0.96768 1.01209 0.99693 1.19703 0.92950 0.91543 0.89061 0.99278 1.21152 1.31081 1.12363 0.90054 0.94403 1.25760 0.97308 0.99956 0.95296 1.70031 1.47625 1.42432 0.98541 0.85860 0.79461 0.79995 0.77157 1.18971 1.22141 1.17906 1.65266 1.07946 1.48714 1.01647 1.23125 0.99616 0.95660 0.90106 1.21215 0.93196 0.97977 0.94364 0.89931 1.22180 0.88094 0.95883 0.92446 1.86449 1.38533 1.58761 1.56049 1.21558 0.93007 1.06009 0.93806 1.23065 0.93601 0.99030 1.03125 1.23004 1.02245 0.90963 1.03169 1.22175 0.88909 0.98913 0.94014 0.92078 0.92837 0.94482 0.92420 0.90630 0.94888 0.93680 0.90970 0.75316 0.88546 0.86071 0.87076 0.89250 0.92863 0.95400 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.25 8.64 71.98 0.62 -5.63 16 2 C 0.18 8.70 1.41 44.17 0.06 8.76 16 3 H -0.01 -0.52 7.04 -2.39 -0.02 -0.53 16 4 C -0.51 -30.03 8.69 25.60 0.22 -29.81 16 5 H 0.04 2.49 7.29 -2.91 -0.02 2.47 16 6 C 0.01 0.85 5.45 84.65 0.46 1.31 16 7 N -0.95 -60.06 13.96 21.45 0.30 -59.76 16 8 Si 0.95 45.97 24.32 68.60 1.67 47.64 16 9 H -0.26 -12.15 6.92 99.48 0.69 -11.46 16 10 H -0.29 -14.02 7.11 99.48 0.71 -13.31 16 11 H -0.25 -11.63 6.53 99.48 0.65 -10.98 16 12 N -0.51 -22.41 5.19 -861.02 -4.47 -26.88 16 13 C 0.04 1.53 4.94 86.50 0.43 1.95 16 14 C -0.05 -1.39 3.21 -10.05 -0.03 -1.42 16 15 H 0.08 2.38 8.14 -2.39 -0.02 2.36 16 16 C 0.09 1.98 5.88 71.98 0.42 2.40 16 17 O -0.59 -12.52 13.56 -148.98 -2.02 -14.54 16 18 C -0.14 -4.22 2.32 -52.14 -0.12 -4.35 16 19 C -0.15 -3.30 9.65 30.41 0.29 -3.00 16 20 C -0.16 -3.84 10.28 30.46 0.31 -3.52 16 21 C 0.09 3.56 5.51 86.20 0.47 4.03 16 22 H 0.06 2.33 6.77 -2.38 -0.02 2.32 16 23 H 0.05 2.45 8.14 -2.39 -0.02 2.43 16 24 H 0.04 1.65 3.44 -2.39 -0.01 1.65 16 25 H 0.27 15.81 8.31 -92.71 -0.77 15.04 16 26 H 0.08 2.66 7.57 -2.39 -0.02 2.64 16 27 H 0.03 1.18 7.53 -2.39 -0.02 1.16 16 28 H 0.04 0.99 7.98 -2.39 -0.02 0.97 16 29 H 0.07 1.18 6.52 -2.38 -0.02 1.16 16 30 H 0.40 4.30 9.12 -74.06 -0.68 3.62 16 31 H 0.10 2.11 8.14 -2.39 -0.02 2.09 16 32 H 0.12 1.95 6.48 -2.39 -0.02 1.94 16 33 H 0.11 2.28 8.14 -2.39 -0.02 2.26 16 34 H 0.09 2.32 8.14 -2.39 -0.02 2.30 16 35 H 0.05 2.40 7.48 -2.39 -0.02 2.39 16 36 H 0.03 1.17 7.95 -2.39 -0.02 1.16 16 Total: -1.00 -70.09 277.75 -1.06 -71.15 By element: Atomic # 1 Polarization: 11.35 SS G_CDS: 0.32 Total: 11.67 kcal Atomic # 6 Polarization: -32.42 SS G_CDS: 3.15 Total: -29.28 kcal Atomic # 7 Polarization: -82.47 SS G_CDS: -4.17 Total: -86.64 kcal Atomic # 8 Polarization: -12.52 SS G_CDS: -2.02 Total: -14.54 kcal Atomic # 14 Polarization: 45.97 SS G_CDS: 1.67 Total: 47.64 kcal Total: -70.09 -1.06 -71.15 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885707516.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.415 kcal (2) G-P(sol) polarization free energy of solvation -70.092 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.677 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.058 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.149 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.734 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds