Wall clock time and date at job start Mon Mar 30 2020 03:05:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08999 * 109.46838 * 2 1 4 4 C 1.50698 * 109.47389 * 120.00179 * 2 1 3 5 5 H 1.07998 * 120.00044 * 119.99775 * 4 2 1 6 6 C 1.37878 * 119.99976 * 300.00052 * 4 2 1 7 7 N 1.31519 * 119.99997 * 359.97438 * 6 4 2 8 8 Si 1.86796 * 120.00265 * 180.02562 * 6 4 2 9 9 H 1.48508 * 109.47008 * 59.99468 * 8 6 4 10 10 H 1.48498 * 109.47656 * 179.97438 * 8 6 4 11 11 H 1.48498 * 109.46774 * 300.00026 * 8 6 4 12 12 N 1.46899 * 109.46642 * 240.00308 * 2 1 3 13 13 C 1.47013 * 111.03584 * 296.33376 * 12 2 1 14 14 C 1.53096 * 109.29168 * 182.35086 * 13 12 2 15 15 O 1.43008 * 109.26502 * 303.17725 * 14 13 12 16 16 C 1.43017 * 113.73822 * 58.66772 * 15 14 13 17 17 C 1.47012 * 111.00261 * 60.00261 * 12 2 1 18 18 H 1.09003 * 109.50062 * 297.58128 * 17 12 2 19 19 C 1.52996 * 109.51073 * 57.66610 * 17 12 2 20 20 C 1.53002 * 117.49888 * 116.17000 * 19 17 12 21 21 C 1.53000 * 117.50107 * 184.82762 * 19 17 12 22 22 H 1.08993 * 109.47917 * 59.99653 * 1 2 3 23 23 H 1.09000 * 109.47363 * 179.97438 * 1 2 3 24 24 H 1.09007 * 109.47235 * 299.99787 * 1 2 3 25 25 H 0.97001 * 120.00253 * 180.02562 * 7 6 4 26 26 H 1.09003 * 109.46763 * 62.42340 * 13 12 2 27 27 H 1.09000 * 109.51044 * 302.31275 * 13 12 2 28 28 H 1.09006 * 109.50454 * 183.24169 * 14 13 12 29 29 H 1.09004 * 109.54131 * 63.13786 * 14 13 12 30 30 H 1.09004 * 109.51110 * 181.39691 * 16 15 14 31 31 H 1.09000 * 109.50385 * 61.26614 * 16 15 14 32 32 H 1.09002 * 115.54951 * 330.49974 * 19 17 12 33 33 H 1.09000 * 117.49996 * 215.00804 * 20 19 17 34 34 H 1.08999 * 117.49664 * 0.02562 * 20 19 17 35 35 H 1.09008 * 117.49673 * 359.97438 * 21 19 17 36 36 H 1.08999 * 117.49942 * 144.97366 * 21 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6533 -1.5885 1.1313 6 6 1.6993 -0.2394 2.4827 7 7 0.9436 0.8302 2.6034 8 14 2.3226 -1.1195 4.0079 9 1 3.8077 -1.1190 4.0076 10 1 1.8281 -0.4193 5.2204 11 1 1.8282 -2.5198 4.0080 12 7 2.0195 -0.6924 -1.1995 13 6 1.6215 -2.1076 -1.1912 14 6 2.2005 -2.8031 -2.4261 15 8 1.7560 -2.1225 -3.6028 16 6 2.1279 -0.7422 -3.6446 17 6 1.5482 -0.0257 -2.4220 18 1 0.4595 -0.0634 -2.4604 19 6 2.0090 1.4332 -2.4186 20 6 2.9804 1.8698 -3.5171 21 6 1.5213 2.3308 -3.5575 22 1 -0.3635 0.5138 -0.8899 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3634 0.5138 0.8900 25 1 0.7096 1.1618 3.4844 26 1 0.5340 -2.1793 -1.2096 27 1 2.0034 -2.5880 -0.2904 28 1 1.8601 -3.8383 -2.4539 29 1 3.2893 -2.7791 -2.3812 30 1 1.7350 -0.2867 -4.5536 31 1 3.2145 -0.6576 -3.6346 32 1 2.1252 1.8871 -1.4344 33 1 3.7356 2.6110 -3.2557 34 1 3.2907 1.1178 -4.2425 35 1 0.8724 1.8819 -4.3096 36 1 1.3162 3.3753 -3.3226 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000885707567.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:05:23 Heat of formation + Delta-G solvation = -6.842058 kcal Electronic energy + Delta-G solvation = -16687.560288 eV Core-core repulsion = 14173.005866 eV Total energy + Delta-G solvation = -2514.554422 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.58287 -36.69330 -35.64652 -32.52364 -30.18168 -29.15904 -25.57519 -25.36628 -24.23726 -22.23998 -21.08114 -20.50719 -18.24987 -16.53427 -16.22541 -15.56924 -14.79032 -14.63850 -14.49588 -14.15936 -13.55410 -13.11694 -12.87271 -12.52942 -11.82657 -11.36619 -11.27530 -11.10400 -11.00243 -10.83029 -10.76556 -10.55652 -10.39017 -9.99229 -9.94484 -9.71055 -9.58568 -8.93947 -8.81903 -8.37705 -7.17060 -6.03383 -4.07548 3.30451 3.35094 3.37580 4.12232 4.24299 4.39304 4.78023 5.14898 5.22577 5.27851 5.39410 5.51621 5.56036 5.69534 5.76382 5.86005 5.87774 6.03348 6.14766 6.15253 6.33425 6.37240 6.56572 6.59627 6.69979 6.81320 6.88358 7.13526 7.44392 7.56990 7.70404 7.79201 8.08570 8.34864 8.56429 8.97424 9.57352 11.03506 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.029772 B = 0.009380 C = 0.007891 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 940.258714 B = 2984.377026 C = 3547.388201 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.211 3.789 3 H 0.047 0.953 4 C -0.504 4.504 5 H 0.062 0.938 6 C 0.060 3.940 7 N -0.893 5.893 8 Si 0.896 3.104 9 H -0.277 1.277 10 H -0.288 1.288 11 H -0.278 1.278 12 N -0.523 5.523 13 C 0.026 3.974 14 C 0.061 3.939 15 O -0.395 6.395 16 C 0.069 3.931 17 C 0.077 3.923 18 H 0.048 0.952 19 C -0.131 4.131 20 C -0.185 4.185 21 C -0.187 4.187 22 H 0.010 0.990 23 H 0.027 0.973 24 H 0.088 0.912 25 H 0.261 0.739 26 H 0.034 0.966 27 H 0.094 0.906 28 H 0.087 0.913 29 H 0.053 0.947 30 H 0.084 0.916 31 H 0.057 0.943 32 H 0.119 0.881 33 H 0.090 0.910 34 H 0.094 0.906 35 H 0.088 0.912 36 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.488 -1.083 -9.834 10.004 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.105 3.895 3 H 0.064 0.936 4 C -0.543 4.543 5 H 0.080 0.920 6 C -0.142 4.142 7 N -0.532 5.532 8 Si 0.724 3.276 9 H -0.202 1.202 10 H -0.214 1.214 11 H -0.204 1.204 12 N -0.248 5.248 13 C -0.102 4.102 14 C -0.016 4.016 15 O -0.314 6.314 16 C -0.008 4.008 17 C -0.032 4.032 18 H 0.066 0.934 19 C -0.150 4.150 20 C -0.222 4.222 21 C -0.224 4.224 22 H 0.029 0.971 23 H 0.046 0.954 24 H 0.106 0.894 25 H 0.071 0.929 26 H 0.052 0.948 27 H 0.113 0.887 28 H 0.105 0.895 29 H 0.071 0.929 30 H 0.102 0.898 31 H 0.076 0.924 32 H 0.137 0.863 33 H 0.108 0.892 34 H 0.113 0.887 35 H 0.107 0.893 36 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 1.824 -1.039 -9.822 10.044 hybrid contribution -0.530 -0.237 1.188 1.322 sum 1.293 -1.276 -8.635 8.824 Atomic orbital electron populations 1.22388 1.00910 0.99216 1.00638 1.19337 0.89714 0.94927 0.85553 0.93572 1.21095 1.30829 1.12568 0.89793 0.92013 1.24919 0.95166 0.95108 0.98968 1.69876 1.36852 1.22930 1.23528 0.86594 0.79225 0.79610 0.82164 1.20233 1.21381 1.20376 1.62550 1.59071 1.01137 1.02019 1.22640 0.98307 0.90943 0.98340 1.22766 0.98666 0.95446 0.84748 1.87882 1.79118 1.22612 1.41758 1.22823 0.99190 0.81463 0.97286 1.21663 0.97458 0.91851 0.92270 0.93437 1.22398 1.02539 0.94596 0.95424 1.23051 0.92710 1.03622 1.02836 1.22966 0.97279 0.99966 1.02214 0.97066 0.95405 0.89376 0.92928 0.94773 0.88736 0.89486 0.92896 0.89764 0.92437 0.86272 0.89187 0.88750 0.89308 0.89088 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.19 8.27 37.16 0.31 -3.88 16 2 C 0.21 5.19 2.10 -68.87 -0.14 5.05 16 3 H 0.05 1.24 5.92 -51.93 -0.31 0.93 16 4 C -0.50 -13.52 7.90 -34.44 -0.27 -13.79 16 5 H 0.06 1.64 6.42 -52.49 -0.34 1.31 16 6 C 0.06 1.62 5.30 -17.82 -0.09 1.53 16 7 N -0.89 -25.10 11.32 55.43 0.63 -24.47 16 8 Si 0.90 21.10 29.54 -169.99 -5.02 16.08 16 9 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 10 H -0.29 -6.77 7.11 56.52 0.40 -6.36 16 11 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 12 N -0.52 -11.18 4.56 -219.80 -1.00 -12.18 16 13 C 0.03 0.52 4.98 -3.71 -0.02 0.50 16 14 C 0.06 1.01 7.01 37.21 0.26 1.28 16 15 O -0.39 -6.96 10.83 -35.23 -0.38 -7.34 16 16 C 0.07 1.13 4.86 37.21 0.18 1.31 16 17 C 0.08 1.43 1.88 -67.60 -0.13 1.31 16 18 H 0.05 0.96 6.44 -51.93 -0.33 0.63 16 19 C -0.13 -2.27 5.63 -90.62 -0.51 -2.78 16 20 C -0.19 -2.61 9.50 -26.69 -0.25 -2.86 16 21 C -0.19 -2.61 9.99 -26.70 -0.27 -2.88 16 22 H 0.01 0.24 6.46 -51.93 -0.34 -0.10 16 23 H 0.03 0.66 6.54 -51.93 -0.34 0.32 16 24 H 0.09 2.35 6.07 -51.93 -0.32 2.04 16 25 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 26 H 0.03 0.71 6.52 -51.93 -0.34 0.37 16 27 H 0.09 1.97 6.18 -51.93 -0.32 1.65 16 28 H 0.09 1.24 8.14 -51.93 -0.42 0.82 16 29 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 30 H 0.08 1.20 7.46 -51.93 -0.39 0.81 16 31 H 0.06 0.92 7.01 -51.93 -0.36 0.56 16 32 H 0.12 2.38 5.89 -51.93 -0.31 2.08 16 33 H 0.09 1.19 8.14 -51.93 -0.42 0.77 16 34 H 0.09 1.22 5.81 -51.93 -0.30 0.92 16 35 H 0.09 1.15 7.97 -51.92 -0.41 0.74 16 36 H 0.09 1.19 8.14 -51.93 -0.42 0.77 16 LS Contribution 270.56 15.07 4.08 4.08 Total: -1.00 -27.96 270.56 -7.86 -35.82 By element: Atomic # 1 Polarization: 8.47 SS G_CDS: -5.23 Total: 3.24 kcal Atomic # 6 Polarization: -14.29 SS G_CDS: -0.94 Total: -15.22 kcal Atomic # 7 Polarization: -36.28 SS G_CDS: -0.37 Total: -36.65 kcal Atomic # 8 Polarization: -6.96 SS G_CDS: -0.38 Total: -7.34 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.08 kcal Total LS contribution 4.08 Total: 4.08 kcal Total: -27.96 -7.86 -35.82 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885707567.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.982 kcal (2) G-P(sol) polarization free energy of solvation -27.959 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.023 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.865 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.824 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.842 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds