Wall clock time and date at job start Mon Mar 30 2020 03:05:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08999 * 109.46838 * 2 1 4 4 C 1.50698 * 109.47389 * 120.00179 * 2 1 3 5 5 H 1.07998 * 120.00044 * 119.99775 * 4 2 1 6 6 C 1.37878 * 119.99976 * 300.00052 * 4 2 1 7 7 N 1.31519 * 119.99997 * 359.97438 * 6 4 2 8 8 Si 1.86796 * 120.00265 * 180.02562 * 6 4 2 9 9 H 1.48508 * 109.47008 * 59.99468 * 8 6 4 10 10 H 1.48498 * 109.47656 * 179.97438 * 8 6 4 11 11 H 1.48498 * 109.46774 * 300.00026 * 8 6 4 12 12 N 1.46899 * 109.46642 * 240.00308 * 2 1 3 13 13 C 1.47013 * 111.03584 * 296.33376 * 12 2 1 14 14 C 1.53096 * 109.29168 * 182.35086 * 13 12 2 15 15 O 1.43008 * 109.26502 * 303.17725 * 14 13 12 16 16 C 1.43017 * 113.73822 * 58.66772 * 15 14 13 17 17 C 1.47012 * 111.00261 * 60.00261 * 12 2 1 18 18 H 1.09003 * 109.50062 * 297.58128 * 17 12 2 19 19 C 1.52996 * 109.51073 * 57.66610 * 17 12 2 20 20 C 1.53002 * 117.49888 * 116.17000 * 19 17 12 21 21 C 1.53000 * 117.50107 * 184.82762 * 19 17 12 22 22 H 1.08993 * 109.47917 * 59.99653 * 1 2 3 23 23 H 1.09000 * 109.47363 * 179.97438 * 1 2 3 24 24 H 1.09007 * 109.47235 * 299.99787 * 1 2 3 25 25 H 0.97001 * 120.00253 * 180.02562 * 7 6 4 26 26 H 1.09003 * 109.46763 * 62.42340 * 13 12 2 27 27 H 1.09000 * 109.51044 * 302.31275 * 13 12 2 28 28 H 1.09006 * 109.50454 * 183.24169 * 14 13 12 29 29 H 1.09004 * 109.54131 * 63.13786 * 14 13 12 30 30 H 1.09004 * 109.51110 * 181.39691 * 16 15 14 31 31 H 1.09000 * 109.50385 * 61.26614 * 16 15 14 32 32 H 1.09002 * 115.54951 * 330.49974 * 19 17 12 33 33 H 1.09000 * 117.49996 * 215.00804 * 20 19 17 34 34 H 1.08999 * 117.49664 * 0.02562 * 20 19 17 35 35 H 1.09008 * 117.49673 * 359.97438 * 21 19 17 36 36 H 1.08999 * 117.49942 * 144.97366 * 21 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6533 -1.5885 1.1313 6 6 1.6993 -0.2394 2.4827 7 7 0.9436 0.8302 2.6034 8 14 2.3226 -1.1195 4.0079 9 1 3.8077 -1.1190 4.0076 10 1 1.8281 -0.4193 5.2204 11 1 1.8282 -2.5198 4.0080 12 7 2.0195 -0.6924 -1.1995 13 6 1.6215 -2.1076 -1.1912 14 6 2.2005 -2.8031 -2.4261 15 8 1.7560 -2.1225 -3.6028 16 6 2.1279 -0.7422 -3.6446 17 6 1.5482 -0.0257 -2.4220 18 1 0.4595 -0.0634 -2.4604 19 6 2.0090 1.4332 -2.4186 20 6 2.9804 1.8698 -3.5171 21 6 1.5213 2.3308 -3.5575 22 1 -0.3635 0.5138 -0.8899 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3634 0.5138 0.8900 25 1 0.7096 1.1618 3.4844 26 1 0.5340 -2.1793 -1.2096 27 1 2.0034 -2.5880 -0.2904 28 1 1.8601 -3.8383 -2.4539 29 1 3.2893 -2.7791 -2.3812 30 1 1.7350 -0.2867 -4.5536 31 1 3.2145 -0.6576 -3.6346 32 1 2.1252 1.8871 -1.4344 33 1 3.7356 2.6110 -3.2557 34 1 3.2907 1.1178 -4.2425 35 1 0.8724 1.8819 -4.3096 36 1 1.3162 3.3753 -3.3226 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000885707567.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:05:23 Heat of formation + Delta-G solvation = -25.032107 kcal Electronic energy + Delta-G solvation = -16688.349068 eV Core-core repulsion = 14173.005866 eV Total energy + Delta-G solvation = -2515.343202 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.05082 -37.97646 -37.31928 -34.48247 -31.58854 -30.98994 -27.46462 -27.08331 -25.70586 -23.47014 -22.65665 -22.04755 -19.79798 -18.35596 -17.76173 -17.16233 -16.45674 -16.15584 -15.87591 -15.70438 -15.08389 -14.72566 -14.54526 -14.14143 -13.72199 -12.97449 -12.79834 -12.68888 -12.64490 -12.48507 -12.32956 -12.28206 -12.07894 -11.94046 -11.28160 -11.08090 -10.97213 -10.77835 -10.53757 -10.31164 -8.89302 -8.11845 -6.22774 1.41973 1.43253 1.50643 2.41267 2.87810 2.93720 3.16965 3.29813 3.86452 3.95294 4.07334 4.19403 4.27012 4.30527 4.38506 4.46523 4.70184 4.73451 4.77067 4.79945 4.85946 4.92064 5.01911 5.07004 5.08515 5.18173 5.29442 5.35832 5.54173 5.69239 5.76129 6.14772 6.21123 6.42936 6.71367 6.90398 7.46080 8.94198 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.029772 B = 0.009380 C = 0.007891 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 940.258714 B = 2984.377026 C = 3547.388201 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.218 3.782 3 H 0.018 0.982 4 C -0.519 4.519 5 H 0.059 0.941 6 C 0.012 3.988 7 N -0.920 5.920 8 Si 0.958 3.042 9 H -0.272 1.272 10 H -0.286 1.286 11 H -0.271 1.271 12 N -0.530 5.530 13 C 0.026 3.974 14 C 0.068 3.932 15 O -0.401 6.401 16 C 0.073 3.927 17 C 0.079 3.921 18 H 0.028 0.972 19 C -0.168 4.168 20 C -0.166 4.166 21 C -0.168 4.168 22 H 0.022 0.978 23 H 0.023 0.977 24 H 0.061 0.939 25 H 0.261 0.739 26 H 0.019 0.981 27 H 0.080 0.920 28 H 0.116 0.884 29 H 0.061 0.939 30 H 0.113 0.887 31 H 0.065 0.935 32 H 0.082 0.918 33 H 0.097 0.903 34 H 0.113 0.887 35 H 0.106 0.894 36 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.252 -1.784 -11.371 11.729 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.111 3.889 3 H 0.036 0.964 4 C -0.557 4.557 5 H 0.078 0.922 6 C -0.187 4.187 7 N -0.560 5.560 8 Si 0.784 3.216 9 H -0.197 1.197 10 H -0.212 1.212 11 H -0.196 1.196 12 N -0.255 5.255 13 C -0.103 4.103 14 C -0.008 4.008 15 O -0.320 6.320 16 C -0.003 4.003 17 C -0.030 4.030 18 H 0.046 0.954 19 C -0.187 4.187 20 C -0.202 4.202 21 C -0.205 4.205 22 H 0.041 0.959 23 H 0.042 0.958 24 H 0.080 0.920 25 H 0.070 0.930 26 H 0.038 0.962 27 H 0.098 0.902 28 H 0.133 0.867 29 H 0.079 0.921 30 H 0.131 0.869 31 H 0.083 0.917 32 H 0.100 0.900 33 H 0.116 0.884 34 H 0.131 0.869 35 H 0.124 0.876 36 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 2.593 -1.748 -11.378 11.800 hybrid contribution -0.776 0.021 1.637 1.811 sum 1.818 -1.727 -9.742 10.059 Atomic orbital electron populations 1.22174 1.00955 0.98562 0.99797 1.19050 0.89462 0.93672 0.86752 0.96405 1.21398 1.30783 1.12596 0.90947 0.92243 1.25692 0.95368 0.95791 1.01836 1.70012 1.37806 1.24147 1.24028 0.85605 0.78736 0.78673 0.78573 1.19741 1.21150 1.19632 1.62465 1.59139 1.01866 1.02006 1.22666 0.97526 0.90355 0.99709 1.22787 0.98946 0.96279 0.82821 1.87882 1.79326 1.23124 1.41654 1.22927 0.99620 0.80791 0.96974 1.21718 0.96396 0.92887 0.91958 0.95443 1.22188 1.06952 0.94353 0.95159 1.23156 0.92820 1.03571 1.00673 1.23069 0.97631 0.99730 1.00077 0.95930 0.95772 0.92013 0.93016 0.96238 0.90202 0.86653 0.92105 0.86917 0.91656 0.90005 0.88437 0.86930 0.87605 0.88289 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -7.82 8.27 71.98 0.60 -7.23 16 2 C 0.22 11.10 2.10 44.17 0.09 11.19 16 3 H 0.02 1.03 5.92 -2.39 -0.01 1.01 16 4 C -0.52 -28.44 7.90 25.60 0.20 -28.24 16 5 H 0.06 3.21 6.42 -2.91 -0.02 3.19 16 6 C 0.01 0.65 5.30 84.65 0.45 1.10 16 7 N -0.92 -53.10 11.32 21.45 0.24 -52.86 16 8 Si 0.96 43.64 29.54 68.60 2.03 45.67 16 9 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 10 H -0.29 -12.83 7.11 99.48 0.71 -12.13 16 11 H -0.27 -11.96 7.11 99.48 0.71 -11.26 16 12 N -0.53 -22.86 4.56 -849.31 -3.87 -26.73 16 13 C 0.03 1.02 4.98 86.31 0.43 1.45 16 14 C 0.07 2.14 7.01 72.01 0.50 2.65 16 15 O -0.40 -13.04 10.83 -148.98 -1.61 -14.65 16 16 C 0.07 2.20 4.86 72.02 0.35 2.55 16 17 C 0.08 2.91 1.88 44.93 0.08 2.99 16 18 H 0.03 1.11 6.44 -2.39 -0.02 1.10 16 19 C -0.17 -5.75 5.63 -10.79 -0.06 -5.81 16 20 C -0.17 -4.24 9.50 30.62 0.29 -3.95 16 21 C -0.17 -4.32 9.99 30.62 0.31 -4.02 16 22 H 0.02 1.03 6.46 -2.39 -0.02 1.01 16 23 H 0.02 1.17 6.54 -2.39 -0.02 1.16 16 24 H 0.06 3.43 6.07 -2.38 -0.01 3.41 16 25 H 0.26 14.39 8.31 -92.71 -0.77 13.62 16 26 H 0.02 0.82 6.52 -2.39 -0.02 0.80 16 27 H 0.08 3.35 6.18 -2.39 -0.01 3.33 16 28 H 0.12 2.96 8.14 -2.38 -0.02 2.94 16 29 H 0.06 1.83 8.14 -2.38 -0.02 1.81 16 30 H 0.11 2.75 7.46 -2.38 -0.02 2.74 16 31 H 0.07 1.88 7.01 -2.39 -0.02 1.87 16 32 H 0.08 3.43 5.89 -2.39 -0.01 3.42 16 33 H 0.10 2.36 8.14 -2.39 -0.02 2.34 16 34 H 0.11 2.48 5.81 -2.39 -0.01 2.47 16 35 H 0.11 2.38 7.97 -2.38 -0.02 2.36 16 36 H 0.10 2.39 8.14 -2.39 -0.02 2.37 16 Total: -1.00 -60.83 270.56 1.10 -59.73 By element: Atomic # 1 Polarization: 15.09 SS G_CDS: 1.07 Total: 16.16 kcal Atomic # 6 Polarization: -30.56 SS G_CDS: 3.24 Total: -27.31 kcal Atomic # 7 Polarization: -75.97 SS G_CDS: -3.63 Total: -79.59 kcal Atomic # 8 Polarization: -13.04 SS G_CDS: -1.61 Total: -14.65 kcal Atomic # 14 Polarization: 43.64 SS G_CDS: 2.03 Total: 45.67 kcal Total: -60.83 1.10 -59.73 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885707567.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.697 kcal (2) G-P(sol) polarization free energy of solvation -60.827 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.130 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.098 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.729 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.032 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds