Wall clock time and date at job start Mon Mar 30 2020 03:07:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08998 * 109.47576 * 2 1 4 4 C 1.50703 * 109.47242 * 240.00110 * 2 1 3 5 5 H 1.08001 * 120.00130 * 245.35458 * 4 2 1 6 6 C 1.37879 * 119.99943 * 65.34277 * 4 2 1 7 7 N 1.31513 * 119.99661 * 185.19231 * 6 4 2 8 8 Si 1.86799 * 119.99986 * 5.20230 * 6 4 2 9 9 H 1.48499 * 109.46979 * 269.99502 * 8 6 4 10 10 H 1.48505 * 109.46910 * 29.99504 * 8 6 4 11 11 H 1.48497 * 109.47325 * 149.99510 * 8 6 4 12 12 N 1.46907 * 109.47481 * 120.00109 * 2 1 3 13 13 C 1.46901 * 110.99802 * 58.95038 * 12 2 1 14 14 C 1.46897 * 110.99864 * 295.00081 * 12 2 1 15 15 C 1.52997 * 109.46899 * 299.99700 * 14 12 2 16 16 C 1.53000 * 109.47133 * 180.02562 * 15 14 12 17 17 C 1.52999 * 109.47328 * 59.99605 * 16 15 14 18 18 C 1.53000 * 109.47328 * 180.02562 * 17 16 15 19 19 C 1.52997 * 109.47336 * 300.00271 * 17 16 15 20 20 C 1.52999 * 109.47227 * 179.97438 * 14 12 2 21 21 H 1.08995 * 109.46839 * 54.95766 * 1 2 3 22 22 H 1.09001 * 109.47403 * 174.96003 * 1 2 3 23 23 H 1.08999 * 109.46930 * 294.95345 * 1 2 3 24 24 H 0.97000 * 120.00543 * 355.00258 * 7 6 4 25 25 H 1.09004 * 109.47264 * 60.00013 * 13 12 2 26 26 H 1.08990 * 109.47439 * 180.02562 * 13 12 2 27 27 H 1.08999 * 109.47127 * 300.00450 * 13 12 2 28 28 H 1.09000 * 109.47363 * 59.99452 * 14 12 2 29 29 H 1.09000 * 109.46911 * 300.00029 * 15 14 12 30 30 H 1.09004 * 109.47427 * 60.00050 * 15 14 12 31 31 H 1.09000 * 109.47028 * 299.99691 * 16 15 14 32 32 H 1.09003 * 109.47456 * 180.02562 * 16 15 14 33 33 H 1.09000 * 109.46996 * 60.00066 * 17 16 15 34 34 H 1.08994 * 109.47300 * 180.02562 * 18 17 16 35 35 H 1.09000 * 109.46964 * 300.00660 * 18 17 16 36 36 H 1.09000 * 109.47028 * 60.00086 * 18 17 16 37 37 H 1.08997 * 109.47169 * 300.00292 * 19 17 16 38 38 H 1.08994 * 109.47346 * 179.97438 * 19 17 16 39 39 H 1.08999 * 109.46959 * 300.00215 * 20 14 12 40 40 H 1.09008 * 109.46847 * 59.99997 * 20 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.5801 -1.6362 -1.1338 6 6 1.7925 -0.1786 -2.4798 7 7 2.1403 -0.8478 -3.5571 8 14 0.9737 1.4926 -2.6420 9 1 -0.4995 1.3178 -2.7068 10 1 1.3216 2.3304 -1.4662 11 1 1.4483 2.1581 -3.8818 12 7 2.0197 -0.6925 1.1995 13 6 1.5283 -2.0761 1.2460 14 6 1.6488 0.0391 2.4181 15 6 2.2600 1.4411 2.3771 16 6 1.8742 2.2029 3.6466 17 6 2.4007 1.4525 4.8716 18 6 2.0144 2.2140 6.1412 19 6 1.7895 0.0505 4.9126 20 6 2.1744 -0.7114 3.6434 21 1 -0.3633 0.5900 -0.8413 22 1 -0.3634 -1.0237 -0.0903 23 1 -0.3633 0.4336 0.9317 24 1 2.6301 -1.6809 -3.4736 25 1 1.8762 -2.6151 0.3647 26 1 1.9053 -2.5656 2.1439 27 1 0.4385 -2.0742 1.2640 28 1 0.5633 0.1176 2.4785 29 1 3.3455 1.3625 2.3167 30 1 1.8852 1.9755 1.5042 31 1 0.7888 2.2814 3.7075 32 1 2.3093 3.2019 3.6173 33 1 3.4862 1.3740 4.8108 34 1 2.3898 1.6797 7.0138 35 1 2.4494 3.2130 6.1122 36 1 0.9289 2.2922 6.2018 37 1 0.7040 0.1290 4.9734 38 1 2.1649 -0.4842 5.7850 39 1 1.7386 -1.7100 3.6723 40 1 3.2599 -0.7902 3.5831 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000042487717.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:07:22 Heat of formation + Delta-G solvation = -18.171259 kcal Electronic energy + Delta-G solvation = -16781.532388 eV Core-core repulsion = 14402.319789 eV Total energy + Delta-G solvation = -2379.212599 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -39.19660 -36.46371 -32.89117 -31.20094 -30.78400 -29.02878 -26.23341 -24.96438 -23.97080 -22.14805 -20.87972 -19.66928 -18.61449 -17.30250 -15.55569 -15.14971 -14.28191 -14.08532 -13.88233 -13.65151 -13.20807 -13.10972 -12.70326 -12.34067 -12.16816 -11.83197 -11.75144 -11.49216 -11.20283 -11.00265 -10.82835 -10.76381 -10.66538 -10.50621 -10.17855 -10.06244 -9.84840 -9.66270 -9.35609 -8.65756 -8.32446 -7.22421 -6.36970 -3.99565 3.38184 3.44652 3.59835 4.51412 4.68198 4.83349 4.87798 5.12027 5.32961 5.35664 5.43531 5.63774 5.67499 5.72790 5.76215 5.79116 5.88028 5.93912 6.03381 6.08645 6.19196 6.25091 6.34355 6.35010 6.39054 6.40220 6.46428 6.52791 6.61160 6.68826 6.72875 6.84656 6.99316 7.32303 7.82022 8.13856 8.37993 8.51942 9.02450 9.69079 11.03660 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.039331 B = 0.007764 C = 0.006957 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 711.726948 B = 3605.327250 C = 4023.539830 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.177 3.823 3 H 0.043 0.957 4 C -0.575 4.575 5 H 0.063 0.937 6 C 0.025 3.975 7 N -0.918 5.918 8 Si 1.055 2.945 9 H -0.287 1.287 10 H -0.280 1.280 11 H -0.290 1.290 12 N -0.523 5.523 13 C 0.033 3.967 14 C 0.081 3.919 15 C -0.114 4.114 16 C -0.111 4.111 17 C -0.093 4.093 18 C -0.146 4.146 19 C -0.110 4.110 20 C -0.114 4.114 21 H 0.045 0.955 22 H 0.051 0.949 23 H 0.027 0.973 24 H 0.266 0.734 25 H 0.072 0.928 26 H 0.047 0.953 27 H 0.015 0.985 28 H 0.032 0.968 29 H 0.068 0.932 30 H 0.066 0.934 31 H 0.057 0.943 32 H 0.059 0.941 33 H 0.069 0.931 34 H 0.051 0.949 35 H 0.052 0.948 36 H 0.051 0.949 37 H 0.057 0.943 38 H 0.057 0.943 39 H 0.060 0.940 40 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.730 4.376 16.568 17.223 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C 0.069 3.931 3 H 0.061 0.939 4 C -0.614 4.614 5 H 0.081 0.919 6 C -0.179 4.179 7 N -0.553 5.553 8 Si 0.885 3.115 9 H -0.214 1.214 10 H -0.207 1.207 11 H -0.217 1.217 12 N -0.245 5.245 13 C -0.115 4.115 14 C -0.028 4.028 15 C -0.151 4.151 16 C -0.149 4.149 17 C -0.111 4.111 18 C -0.203 4.203 19 C -0.148 4.148 20 C -0.151 4.151 21 H 0.064 0.936 22 H 0.070 0.930 23 H 0.046 0.954 24 H 0.076 0.924 25 H 0.091 0.909 26 H 0.066 0.934 27 H 0.033 0.967 28 H 0.050 0.950 29 H 0.086 0.914 30 H 0.085 0.915 31 H 0.075 0.925 32 H 0.078 0.922 33 H 0.088 0.912 34 H 0.070 0.930 35 H 0.071 0.929 36 H 0.071 0.929 37 H 0.076 0.924 38 H 0.076 0.924 39 H 0.078 0.922 40 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -1.791 5.439 15.423 16.451 hybrid contribution -0.419 -1.147 1.078 1.629 sum -2.209 4.292 16.501 17.192 Atomic orbital electron populations 1.22758 1.02012 1.00939 0.98596 1.19866 0.88658 0.95697 0.88856 0.93910 1.22079 1.38594 1.10232 0.90459 0.91863 1.25673 0.96832 1.03370 0.92037 1.70805 1.37374 1.16935 1.30227 0.83860 0.76089 0.76006 0.75505 1.21392 1.20658 1.21714 1.62274 1.59197 1.01696 1.01378 1.22277 0.96858 0.91174 1.01235 1.21588 0.96722 0.93674 0.90818 1.21609 1.01553 0.95051 0.96921 1.21588 1.00562 0.98382 0.94398 1.21150 1.00377 0.95007 0.94564 1.21834 1.01235 0.99917 0.97355 1.21561 1.00335 0.95325 0.97617 1.21646 1.01664 0.98362 0.93472 0.93637 0.93011 0.95435 0.92367 0.90886 0.93390 0.96675 0.94985 0.91358 0.91548 0.92451 0.92250 0.91244 0.93037 0.92938 0.92938 0.92448 0.92408 0.92159 0.91460 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.11 8.04 37.16 0.30 -3.81 16 2 C 0.18 4.25 1.66 -68.86 -0.11 4.14 16 3 H 0.04 1.07 4.55 -51.93 -0.24 0.83 16 4 C -0.58 -16.25 8.41 -34.44 -0.29 -16.54 16 5 H 0.06 1.93 6.78 -52.49 -0.36 1.58 16 6 C 0.02 0.71 5.43 -17.82 -0.10 0.62 16 7 N -0.92 -28.59 13.70 55.43 0.76 -27.83 16 8 Si 1.05 25.97 25.29 -169.99 -4.30 21.67 16 9 H -0.29 -6.76 6.81 56.52 0.38 -6.37 16 10 H -0.28 -6.42 6.36 56.52 0.36 -6.06 16 11 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 12 N -0.52 -11.08 4.61 -228.30 -1.05 -12.14 16 13 C 0.03 0.65 8.52 60.07 0.51 1.17 16 14 C 0.08 1.41 1.67 -67.72 -0.11 1.30 16 15 C -0.11 -1.87 4.98 -26.73 -0.13 -2.01 16 16 C -0.11 -1.45 5.20 -26.73 -0.14 -1.59 16 17 C -0.09 -1.08 2.72 -90.62 -0.25 -1.32 16 18 C -0.15 -1.41 9.19 37.16 0.34 -1.07 16 19 C -0.11 -1.33 5.20 -26.76 -0.14 -1.47 16 20 C -0.11 -1.67 4.85 -26.76 -0.13 -1.80 16 21 H 0.04 1.03 4.40 -51.93 -0.23 0.80 16 22 H 0.05 1.16 6.67 -51.93 -0.35 0.82 16 23 H 0.03 0.54 6.30 -51.93 -0.33 0.21 16 24 H 0.27 8.27 8.72 -40.82 -0.36 7.91 16 25 H 0.07 1.62 6.43 -51.93 -0.33 1.28 16 26 H 0.05 0.82 6.01 -51.93 -0.31 0.51 16 27 H 0.01 0.29 6.40 -51.93 -0.33 -0.04 16 28 H 0.03 0.58 6.33 -51.93 -0.33 0.25 16 29 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 30 H 0.07 1.21 6.30 -51.93 -0.33 0.88 16 31 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 32 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 34 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 35 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 36 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 37 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 38 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 39 H 0.06 0.87 6.26 -51.93 -0.32 0.55 16 40 H 0.07 1.02 8.14 -51.92 -0.42 0.60 16 LS Contribution 286.31 15.07 4.31 4.31 Total: -1.00 -29.58 286.31 -7.42 -36.99 By element: Atomic # 1 Polarization: 6.26 SS G_CDS: -6.89 Total: -0.63 kcal Atomic # 6 Polarization: -22.14 SS G_CDS: -0.25 Total: -22.39 kcal Atomic # 7 Polarization: -39.67 SS G_CDS: -0.29 Total: -39.97 kcal Atomic # 14 Polarization: 25.97 SS G_CDS: -4.30 Total: 21.67 kcal Total LS contribution 4.31 Total: 4.31 kcal Total: -29.58 -7.42 -36.99 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042487717.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.822 kcal (2) G-P(sol) polarization free energy of solvation -29.575 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.753 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.418 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.993 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.171 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds