Wall clock time and date at job start Mon Mar 30 2020 03:07:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08998 * 109.47576 * 2 1 4 4 C 1.50703 * 109.47242 * 240.00110 * 2 1 3 5 5 H 1.08001 * 120.00130 * 245.35458 * 4 2 1 6 6 C 1.37879 * 119.99943 * 65.34277 * 4 2 1 7 7 N 1.31513 * 119.99661 * 185.19231 * 6 4 2 8 8 Si 1.86799 * 119.99986 * 5.20230 * 6 4 2 9 9 H 1.48499 * 109.46979 * 269.99502 * 8 6 4 10 10 H 1.48505 * 109.46910 * 29.99504 * 8 6 4 11 11 H 1.48497 * 109.47325 * 149.99510 * 8 6 4 12 12 N 1.46907 * 109.47481 * 120.00109 * 2 1 3 13 13 C 1.46901 * 110.99802 * 58.95038 * 12 2 1 14 14 C 1.46897 * 110.99864 * 295.00081 * 12 2 1 15 15 C 1.52997 * 109.46899 * 299.99700 * 14 12 2 16 16 C 1.53000 * 109.47133 * 180.02562 * 15 14 12 17 17 C 1.52999 * 109.47328 * 59.99605 * 16 15 14 18 18 C 1.53000 * 109.47328 * 180.02562 * 17 16 15 19 19 C 1.52997 * 109.47336 * 300.00271 * 17 16 15 20 20 C 1.52999 * 109.47227 * 179.97438 * 14 12 2 21 21 H 1.08995 * 109.46839 * 54.95766 * 1 2 3 22 22 H 1.09001 * 109.47403 * 174.96003 * 1 2 3 23 23 H 1.08999 * 109.46930 * 294.95345 * 1 2 3 24 24 H 0.97000 * 120.00543 * 355.00258 * 7 6 4 25 25 H 1.09004 * 109.47264 * 60.00013 * 13 12 2 26 26 H 1.08990 * 109.47439 * 180.02562 * 13 12 2 27 27 H 1.08999 * 109.47127 * 300.00450 * 13 12 2 28 28 H 1.09000 * 109.47363 * 59.99452 * 14 12 2 29 29 H 1.09000 * 109.46911 * 300.00029 * 15 14 12 30 30 H 1.09004 * 109.47427 * 60.00050 * 15 14 12 31 31 H 1.09000 * 109.47028 * 299.99691 * 16 15 14 32 32 H 1.09003 * 109.47456 * 180.02562 * 16 15 14 33 33 H 1.09000 * 109.46996 * 60.00066 * 17 16 15 34 34 H 1.08994 * 109.47300 * 180.02562 * 18 17 16 35 35 H 1.09000 * 109.46964 * 300.00660 * 18 17 16 36 36 H 1.09000 * 109.47028 * 60.00086 * 18 17 16 37 37 H 1.08997 * 109.47169 * 300.00292 * 19 17 16 38 38 H 1.08994 * 109.47346 * 179.97438 * 19 17 16 39 39 H 1.08999 * 109.46959 * 300.00215 * 20 14 12 40 40 H 1.09008 * 109.46847 * 59.99997 * 20 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.5801 -1.6362 -1.1338 6 6 1.7925 -0.1786 -2.4798 7 7 2.1403 -0.8478 -3.5571 8 14 0.9737 1.4926 -2.6420 9 1 -0.4995 1.3178 -2.7068 10 1 1.3216 2.3304 -1.4662 11 1 1.4483 2.1581 -3.8818 12 7 2.0197 -0.6925 1.1995 13 6 1.5283 -2.0761 1.2460 14 6 1.6488 0.0391 2.4181 15 6 2.2600 1.4411 2.3771 16 6 1.8742 2.2029 3.6466 17 6 2.4007 1.4525 4.8716 18 6 2.0144 2.2140 6.1412 19 6 1.7895 0.0505 4.9126 20 6 2.1744 -0.7114 3.6434 21 1 -0.3633 0.5900 -0.8413 22 1 -0.3634 -1.0237 -0.0903 23 1 -0.3633 0.4336 0.9317 24 1 2.6301 -1.6809 -3.4736 25 1 1.8762 -2.6151 0.3647 26 1 1.9053 -2.5656 2.1439 27 1 0.4385 -2.0742 1.2640 28 1 0.5633 0.1176 2.4785 29 1 3.3455 1.3625 2.3167 30 1 1.8852 1.9755 1.5042 31 1 0.7888 2.2814 3.7075 32 1 2.3093 3.2019 3.6173 33 1 3.4862 1.3740 4.8108 34 1 2.3898 1.6797 7.0138 35 1 2.4494 3.2130 6.1122 36 1 0.9289 2.2922 6.2018 37 1 0.7040 0.1290 4.9734 38 1 2.1649 -0.4842 5.7850 39 1 1.7386 -1.7100 3.6723 40 1 3.2599 -0.7902 3.5831 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000042487717.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:07:21 Heat of formation + Delta-G solvation = -37.134220 kcal Electronic energy + Delta-G solvation = -16782.354683 eV Core-core repulsion = 14402.319789 eV Total energy + Delta-G solvation = -2380.034894 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.54578 -37.89315 -34.86358 -32.71137 -31.97972 -30.61802 -27.50576 -26.92627 -25.46374 -23.34427 -22.33510 -20.82474 -20.27017 -19.37831 -17.19732 -16.52797 -15.76703 -15.45190 -15.06932 -15.06366 -14.84111 -14.68801 -14.03396 -13.62848 -13.52585 -13.37359 -13.29927 -13.07722 -12.77425 -12.45883 -12.17294 -12.14163 -11.89770 -11.81470 -11.74882 -11.53922 -11.38125 -11.02551 -10.84987 -10.67698 -10.50311 -8.91494 -8.69203 -6.33245 1.39747 1.50382 1.66850 2.46729 3.10490 3.24959 3.79032 3.83736 4.06970 4.24457 4.28100 4.44948 4.45500 4.50622 4.59313 4.60453 4.66185 4.66999 4.73364 4.79577 4.88826 4.96415 4.99711 5.03634 5.07002 5.17935 5.20352 5.25693 5.32491 5.41206 5.45077 5.47601 5.51574 5.65001 5.86167 6.07035 6.32603 6.65017 6.76300 7.45273 8.69308 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.039331 B = 0.007764 C = 0.006957 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 711.726948 B = 3605.327250 C = 4023.539830 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.180 3.820 3 H 0.040 0.960 4 C -0.573 4.573 5 H 0.024 0.976 6 C -0.028 4.028 7 N -0.951 5.951 8 Si 1.091 2.909 9 H -0.266 1.266 10 H -0.253 1.253 11 H -0.292 1.292 12 N -0.541 5.541 13 C 0.039 3.961 14 C 0.080 3.920 15 C -0.113 4.113 16 C -0.105 4.105 17 C -0.091 4.091 18 C -0.141 4.141 19 C -0.105 4.105 20 C -0.109 4.109 21 H 0.043 0.957 22 H 0.042 0.958 23 H 0.056 0.944 24 H 0.250 0.750 25 H 0.038 0.962 26 H 0.077 0.923 27 H 0.019 0.981 28 H 0.033 0.967 29 H 0.056 0.944 30 H 0.046 0.954 31 H 0.062 0.938 32 H 0.070 0.930 33 H 0.065 0.935 34 H 0.061 0.939 35 H 0.058 0.942 36 H 0.056 0.944 37 H 0.062 0.938 38 H 0.076 0.924 39 H 0.062 0.938 40 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.871 6.041 19.367 20.489 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C 0.071 3.929 3 H 0.058 0.942 4 C -0.612 4.612 5 H 0.042 0.958 6 C -0.225 4.225 7 N -0.588 5.588 8 Si 0.914 3.086 9 H -0.192 1.192 10 H -0.177 1.177 11 H -0.219 1.219 12 N -0.264 5.264 13 C -0.109 4.109 14 C -0.028 4.028 15 C -0.151 4.151 16 C -0.143 4.143 17 C -0.110 4.110 18 C -0.199 4.199 19 C -0.143 4.143 20 C -0.147 4.147 21 H 0.061 0.939 22 H 0.062 0.938 23 H 0.075 0.925 24 H 0.059 0.941 25 H 0.057 0.943 26 H 0.095 0.905 27 H 0.038 0.962 28 H 0.051 0.949 29 H 0.074 0.926 30 H 0.065 0.935 31 H 0.081 0.919 32 H 0.089 0.911 33 H 0.084 0.916 34 H 0.080 0.920 35 H 0.077 0.923 36 H 0.075 0.925 37 H 0.081 0.919 38 H 0.095 0.905 39 H 0.081 0.919 40 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -2.930 7.088 18.260 19.805 hybrid contribution 0.019 -1.760 0.251 1.778 sum -2.911 5.327 18.511 19.481 Atomic orbital electron populations 1.22607 1.00267 1.00693 1.00043 1.19651 0.89823 0.94999 0.88389 0.94183 1.22292 1.37293 1.08851 0.92732 0.95794 1.27096 0.97185 1.06344 0.91851 1.70936 1.39444 1.17042 1.31406 0.83441 0.76445 0.72258 0.76475 1.19210 1.17723 1.21862 1.62175 1.59856 1.02319 1.02074 1.22196 0.97056 0.90638 1.01005 1.21722 0.96879 0.94174 0.89989 1.21600 1.00626 0.94730 0.98161 1.21556 1.01020 0.98596 0.93133 1.21141 1.00087 0.94857 0.94907 1.21782 1.01608 1.00050 0.96417 1.21540 1.00766 0.95347 0.96599 1.21610 1.00993 0.98584 0.93486 0.93867 0.93848 0.92508 0.94128 0.94347 0.90451 0.96217 0.94936 0.92561 0.93518 0.91887 0.91101 0.91624 0.91951 0.92323 0.92498 0.91888 0.90520 0.91904 0.92310 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -7.61 8.04 71.98 0.58 -7.03 16 2 C 0.18 8.57 1.66 44.17 0.07 8.65 16 3 H 0.04 1.96 4.55 -2.39 -0.01 1.95 16 4 C -0.57 -33.30 8.41 25.60 0.22 -33.08 16 5 H 0.02 1.54 6.78 -2.91 -0.02 1.52 16 6 C -0.03 -1.69 5.43 84.66 0.46 -1.23 16 7 N -0.95 -61.24 13.70 21.45 0.29 -60.95 16 8 Si 1.09 51.71 25.29 68.60 1.73 53.44 16 9 H -0.27 -11.72 6.81 99.48 0.68 -11.04 16 10 H -0.25 -10.77 6.36 99.48 0.63 -10.13 16 11 H -0.29 -13.85 7.11 99.48 0.71 -13.14 16 12 N -0.54 -22.71 4.61 -876.20 -4.04 -26.75 16 13 C 0.04 1.56 8.52 127.69 1.09 2.65 16 14 C 0.08 2.65 1.67 44.91 0.07 2.73 16 15 C -0.11 -3.54 4.98 30.59 0.15 -3.39 16 16 C -0.11 -2.43 5.20 30.59 0.16 -2.27 16 17 C -0.09 -1.82 2.72 -10.79 -0.03 -1.85 16 18 C -0.14 -2.17 9.19 71.98 0.66 -1.50 16 19 C -0.10 -2.14 5.20 30.58 0.16 -1.99 16 20 C -0.11 -2.92 4.85 30.58 0.15 -2.78 16 21 H 0.04 1.86 4.40 -2.39 -0.01 1.85 16 22 H 0.04 1.90 6.67 -2.39 -0.02 1.89 16 23 H 0.06 2.09 6.30 -2.39 -0.02 2.07 16 24 H 0.25 16.37 8.72 -92.71 -0.81 15.56 16 25 H 0.04 1.76 6.43 -2.38 -0.02 1.74 16 26 H 0.08 2.57 6.01 -2.39 -0.01 2.55 16 27 H 0.02 0.75 6.40 -2.39 -0.02 0.73 16 28 H 0.03 1.09 6.33 -2.39 -0.02 1.07 16 29 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 30 H 0.05 1.62 6.30 -2.39 -0.02 1.61 16 31 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 32 H 0.07 1.48 8.14 -2.39 -0.02 1.47 16 33 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 34 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 35 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 36 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 37 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 38 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 39 H 0.06 1.64 6.26 -2.39 -0.01 1.63 16 40 H 0.06 1.68 8.14 -2.38 -0.02 1.66 16 Total: -1.00 -65.38 286.31 2.58 -62.80 By element: Atomic # 1 Polarization: 11.70 SS G_CDS: 0.85 Total: 12.56 kcal Atomic # 6 Polarization: -44.84 SS G_CDS: 3.74 Total: -41.10 kcal Atomic # 7 Polarization: -83.95 SS G_CDS: -3.75 Total: -87.70 kcal Atomic # 14 Polarization: 51.71 SS G_CDS: 1.73 Total: 53.44 kcal Total: -65.38 2.58 -62.80 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042487717.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.661 kcal (2) G-P(sol) polarization free energy of solvation -65.378 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.717 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.582 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.795 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.134 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds