Wall clock time and date at job start Mon Mar 30 2020 03:18:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52997 * 109.47056 * 2 1 4 4 C 1.53006 * 109.52147 * 300.12906 * 3 2 1 5 5 C 1.53114 * 109.52307 * 179.97438 * 3 2 1 6 6 C 1.53037 * 109.31211 * 182.35784 * 5 3 2 7 7 N 1.46929 * 109.47910 * 59.15772 * 6 5 3 8 8 C 1.46900 * 110.98461 * 174.18240 * 7 6 5 9 9 H 1.09004 * 109.47139 * 179.23273 * 8 7 6 10 10 C 1.52997 * 109.47193 * 59.22949 * 8 7 6 11 11 C 1.50696 * 109.47220 * 299.22892 * 8 7 6 12 12 H 1.08004 * 120.00050 * 0.02562 * 11 8 7 13 13 C 1.37881 * 120.00276 * 180.02562 * 11 8 7 14 14 N 1.31515 * 119.99888 * 359.97438 * 13 11 8 15 15 Si 1.86807 * 120.00028 * 179.97438 * 13 11 8 16 16 H 1.48496 * 109.46905 * 0.02562 * 15 13 11 17 17 H 1.48501 * 109.46856 * 119.99920 * 15 13 11 18 18 H 1.48500 * 109.47080 * 239.99878 * 15 13 11 19 19 C 1.46850 * 111.22205 * 298.28247 * 7 6 5 20 20 C 1.53037 * 109.52028 * 61.74456 * 19 7 6 21 21 H 1.09002 * 109.47259 * 179.97438 * 1 2 3 22 22 H 1.08999 * 109.47348 * 300.00221 * 1 2 3 23 23 H 1.09000 * 109.46860 * 60.00129 * 1 2 3 24 24 H 1.08999 * 109.46892 * 239.99502 * 2 1 3 25 25 H 1.09000 * 109.46860 * 119.99871 * 2 1 3 26 26 H 1.09001 * 109.46379 * 299.87158 * 4 3 2 27 27 H 1.08997 * 109.47470 * 59.87372 * 4 3 2 28 28 H 1.08997 * 109.46799 * 179.87712 * 4 3 2 29 29 H 1.09002 * 109.50377 * 302.31909 * 5 3 2 30 30 H 1.09003 * 109.50316 * 62.39904 * 5 3 2 31 31 H 1.08994 * 109.46612 * 179.21753 * 6 5 3 32 32 H 1.09007 * 109.46083 * 299.18512 * 6 5 3 33 33 H 1.09010 * 109.46985 * 179.97438 * 10 8 7 34 34 H 1.08995 * 109.47580 * 299.99653 * 10 8 7 35 35 H 1.09001 * 109.47497 * 60.00138 * 10 8 7 36 36 H 0.96999 * 119.99988 * 180.02562 * 14 13 11 37 37 H 1.08997 * 109.46198 * 301.72747 * 19 7 6 38 38 H 1.08999 * 109.45191 * 181.75464 * 19 7 6 39 39 H 1.08997 * 109.50150 * 180.88044 * 20 19 7 40 40 H 1.08997 * 109.53578 * 60.77667 * 20 19 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.5280 2.1658 -1.2473 5 6 3.5712 1.4439 0.0006 6 6 4.0759 2.8874 0.0601 7 7 3.5667 3.5348 1.2767 8 6 4.1417 4.8769 1.4385 9 1 3.7377 5.3391 2.3393 10 6 3.7862 5.7341 0.2221 11 6 5.6401 4.7704 1.5574 12 1 6.1177 3.8026 1.5164 13 6 6.4016 5.9086 1.7186 14 7 5.8201 7.0872 1.7680 15 14 8.2591 5.7764 1.8667 16 1 8.6622 4.3498 1.7804 17 1 8.8989 6.5386 0.7644 18 1 8.6926 6.3359 3.1721 19 6 2.0991 3.5877 1.2763 20 6 1.5362 2.1648 1.2527 21 1 -0.3634 -1.0277 -0.0005 22 1 -0.3634 0.5139 0.8899 23 1 -0.3633 0.5138 -0.8900 24 1 1.8933 -0.5139 -0.8899 25 1 1.8933 -0.5138 0.8900 26 1 1.8914 1.6544 -2.1386 27 1 0.4380 2.1643 -1.2464 28 1 1.8900 3.1939 -1.2453 29 1 3.9352 0.8950 0.8692 30 1 3.9359 0.9680 -0.9097 31 1 5.1658 2.8908 0.0747 32 1 3.7229 3.4319 -0.8158 33 1 4.2125 6.7301 0.3424 34 1 4.1902 5.2720 -0.6786 35 1 2.7023 5.8112 0.1361 36 1 6.3558 7.8879 1.8809 37 1 1.7555 4.1289 0.3948 38 1 1.7541 4.0999 2.1744 39 1 0.4471 2.2045 1.2366 40 1 1.8677 1.6269 2.1408 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000060941603.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:18:56 Heat of formation + Delta-G solvation = -17.709504 kcal Electronic energy + Delta-G solvation = -16865.917869 eV Core-core repulsion = 14486.725294 eV Total energy + Delta-G solvation = -2379.192575 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.41027 -35.91701 -32.81238 -30.82416 -30.21406 -28.34510 -26.57966 -25.21789 -24.28622 -22.36733 -21.32056 -19.44801 -17.50777 -16.08457 -15.46164 -14.82153 -14.49567 -14.12394 -14.06101 -13.48443 -13.13158 -12.99597 -12.47373 -12.00359 -11.90308 -11.71410 -11.40276 -11.23271 -11.06027 -10.98661 -10.88521 -10.67271 -10.60381 -10.31696 -10.11780 -9.98670 -9.91422 -9.56201 -9.37747 -8.76490 -8.34767 -6.98085 -5.97231 -4.00481 3.32052 3.39876 3.44566 4.44796 4.92572 4.99669 5.08198 5.15003 5.34883 5.45801 5.59099 5.63375 5.82225 5.85005 5.91472 5.98523 6.04613 6.07044 6.14257 6.22204 6.26408 6.33827 6.40207 6.56114 6.59060 6.59924 6.69853 6.79012 6.89481 6.93416 6.97984 7.21290 7.59299 7.78499 7.89966 8.21843 8.47629 8.69845 9.06485 9.64571 11.09984 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.049689 B = 0.006938 C = 0.006578 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 563.372368 B = 4034.998827 C = 4255.342966 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.111 4.111 3 C -0.060 4.060 4 C -0.145 4.145 5 C -0.106 4.106 6 C 0.062 3.938 7 N -0.530 5.530 8 C 0.210 3.790 9 H 0.037 0.963 10 C -0.170 4.170 11 C -0.497 4.497 12 H 0.063 0.937 13 C 0.057 3.943 14 N -0.895 5.895 15 Si 0.895 3.105 16 H -0.273 1.273 17 H -0.286 1.286 18 H -0.285 1.285 19 C 0.052 3.948 20 C -0.102 4.102 21 H 0.046 0.954 22 H 0.056 0.944 23 H 0.054 0.946 24 H 0.056 0.944 25 H 0.059 0.941 26 H 0.047 0.953 27 H 0.051 0.949 28 H 0.060 0.940 29 H 0.064 0.936 30 H 0.053 0.947 31 H 0.080 0.920 32 H 0.025 0.975 33 H 0.086 0.914 34 H 0.028 0.972 35 H 0.007 0.993 36 H 0.259 0.741 37 H 0.027 0.973 38 H 0.061 0.939 39 H 0.056 0.944 40 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.468 -10.199 -4.274 13.928 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.149 4.149 3 C -0.061 4.061 4 C -0.202 4.202 5 C -0.144 4.144 6 C -0.066 4.066 7 N -0.254 5.254 8 C 0.104 3.896 9 H 0.055 0.945 10 C -0.230 4.230 11 C -0.535 4.535 12 H 0.081 0.919 13 C -0.144 4.144 14 N -0.535 5.535 15 Si 0.723 3.277 16 H -0.198 1.198 17 H -0.212 1.212 18 H -0.211 1.211 19 C -0.076 4.076 20 C -0.140 4.140 21 H 0.065 0.935 22 H 0.075 0.925 23 H 0.073 0.927 24 H 0.075 0.925 25 H 0.078 0.922 26 H 0.067 0.933 27 H 0.070 0.930 28 H 0.079 0.921 29 H 0.083 0.917 30 H 0.072 0.928 31 H 0.098 0.902 32 H 0.043 0.957 33 H 0.105 0.895 34 H 0.047 0.953 35 H 0.026 0.974 36 H 0.069 0.931 37 H 0.045 0.955 38 H 0.079 0.921 39 H 0.075 0.925 40 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -8.271 -10.293 -3.842 13.752 hybrid contribution 0.748 0.616 -0.641 1.162 sum -7.523 -9.677 -4.483 13.051 Atomic orbital electron populations 1.21877 0.96424 1.00829 1.02007 1.21558 0.95475 0.96428 1.01423 1.20576 0.95846 0.94231 0.95409 1.22000 1.00283 1.01011 0.96881 1.21693 0.93780 0.98070 1.00881 1.21965 1.00729 0.92347 0.91531 1.62256 1.03823 1.23294 1.36042 1.19281 0.94538 0.82161 0.93642 0.94467 1.22385 0.95974 1.04978 0.99629 1.21180 0.90841 0.92951 1.48574 0.91929 1.24935 0.98570 0.95354 0.95507 1.69902 1.35056 0.97645 1.50881 0.86492 0.85643 0.78076 0.77503 1.19768 1.21237 1.21099 1.22025 0.90575 0.95272 0.99759 1.21661 0.98630 0.96433 0.97285 0.93500 0.92452 0.92677 0.92548 0.92205 0.93344 0.93021 0.92091 0.91735 0.92837 0.90202 0.95660 0.89521 0.95292 0.97435 0.93149 0.95497 0.92062 0.92546 0.91721 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.61 9.21 37.16 0.34 -1.27 16 2 C -0.11 -1.32 5.00 -26.73 -0.13 -1.46 16 3 C -0.06 -0.85 0.55 -154.38 -0.08 -0.94 16 4 C -0.14 -1.98 7.55 37.16 0.28 -1.70 16 5 C -0.11 -1.71 4.88 -26.65 -0.13 -1.84 16 6 C 0.06 1.24 4.42 -3.79 -0.02 1.22 16 7 N -0.53 -11.50 4.64 -228.01 -1.06 -12.55 16 8 C 0.21 5.35 2.35 -68.87 -0.16 5.19 16 9 H 0.04 1.05 8.08 -51.93 -0.42 0.63 16 10 C -0.17 -4.18 8.28 37.16 0.31 -3.88 16 11 C -0.50 -13.68 7.86 -34.44 -0.27 -13.96 16 12 H 0.06 1.73 6.76 -52.48 -0.35 1.38 16 13 C 0.06 1.58 5.30 -17.82 -0.09 1.49 16 14 N -0.90 -25.73 11.32 55.43 0.63 -25.10 16 15 Si 0.89 21.50 29.54 -169.99 -5.02 16.48 16 16 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 17 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 18 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 19 C 0.05 0.97 4.78 -3.83 -0.02 0.95 16 20 C -0.10 -1.56 4.46 -26.65 -0.12 -1.68 16 21 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 22 H 0.06 0.61 6.50 -51.93 -0.34 0.27 16 23 H 0.05 0.56 6.43 -51.93 -0.33 0.23 16 24 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 25 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 26 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 27 H 0.05 0.64 6.42 -51.93 -0.33 0.30 16 28 H 0.06 0.96 4.92 -51.93 -0.26 0.70 16 29 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 30 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 31 H 0.08 1.74 6.35 -51.93 -0.33 1.41 16 32 H 0.03 0.51 5.00 -51.92 -0.26 0.25 16 33 H 0.09 2.35 6.07 -51.92 -0.32 2.03 16 34 H 0.03 0.69 6.52 -51.93 -0.34 0.35 16 35 H 0.01 0.15 6.65 -51.93 -0.35 -0.19 16 36 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 37 H 0.03 0.51 5.09 -51.93 -0.26 0.25 16 38 H 0.06 1.16 8.08 -51.93 -0.42 0.74 16 39 H 0.06 0.76 6.58 -51.93 -0.34 0.42 16 40 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 LS Contribution 286.20 15.07 4.31 4.31 Total: -1.00 -27.86 286.20 -7.98 -35.83 By element: Atomic # 1 Polarization: 5.63 SS G_CDS: -6.74 Total: -1.11 kcal Atomic # 6 Polarization: -17.76 SS G_CDS: -0.10 Total: -17.86 kcal Atomic # 7 Polarization: -37.22 SS G_CDS: -0.43 Total: -37.65 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.48 kcal Total LS contribution 4.31 Total: 4.31 kcal Total: -27.86 -7.98 -35.83 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000060941603.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.125 kcal (2) G-P(sol) polarization free energy of solvation -27.856 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.731 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.979 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.835 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.710 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds