Wall clock time and date at job start Mon Mar 30 2020 03:09:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53326 * 1 3 3 C 1.54499 * 107.21499 * 2 1 4 4 C 1.52686 * 109.53114 * 116.38201 * 2 1 3 5 5 C 1.52858 * 110.32662 * 75.03749 * 4 2 1 6 6 C 1.53310 * 109.24284 * 179.27028 * 5 4 2 7 7 C 1.50704 * 109.46976 * 174.99749 * 6 5 4 8 8 H 1.08005 * 119.99631 * 0.02562 * 7 6 5 9 9 C 1.37875 * 119.99951 * 180.02562 * 7 6 5 10 10 N 1.31507 * 120.00217 * 0.02562 * 9 7 6 11 11 Si 1.86808 * 119.99890 * 180.02562 * 9 7 6 12 12 H 1.48500 * 109.46928 * 59.99960 * 11 9 7 13 13 H 1.48499 * 109.46710 * 180.02562 * 11 9 7 14 14 H 1.48497 * 109.46694 * 299.99967 * 11 9 7 15 15 C 1.52852 * 108.49186 * 60.26420 * 5 4 2 16 16 C 1.52663 * 110.39360 * 299.88685 * 15 5 4 17 17 C 1.54499 * 107.52224 * 168.50042 * 16 15 5 18 18 C 1.53348 * 109.51394 * 284.65885 * 16 15 5 19 19 N 1.44792 * 113.01661 * 49.17555 * 16 15 5 20 20 H 1.09005 * 109.47039 * 303.61525 * 1 2 3 21 21 H 1.09001 * 109.47483 * 63.61542 * 1 2 3 22 22 H 1.09002 * 109.47222 * 183.62105 * 1 2 3 23 23 H 1.08998 * 109.46790 * 177.70355 * 3 2 1 24 24 H 1.08996 * 109.46486 * 297.69834 * 3 2 1 25 25 H 1.08994 * 109.47153 * 57.70494 * 3 2 1 26 26 H 1.09223 * 109.44396 * 195.44518 * 4 2 1 27 27 H 1.09229 * 109.44438 * 314.63805 * 4 2 1 28 28 H 1.08699 * 110.42813 * 299.12421 * 5 4 2 29 29 H 1.08997 * 109.47274 * 295.00110 * 6 5 4 30 30 H 1.08997 * 109.46782 * 55.00499 * 6 5 4 31 31 H 0.96995 * 120.00523 * 179.97438 * 10 9 7 32 32 H 1.09234 * 109.37473 * 60.36482 * 15 5 4 33 33 H 1.09242 * 109.36236 * 179.42489 * 15 5 4 34 34 H 1.09006 * 109.47260 * 59.99497 * 17 16 15 35 35 H 1.08999 * 109.47511 * 180.02562 * 17 16 15 36 36 H 1.09009 * 109.46747 * 299.99860 * 17 16 15 37 37 H 1.08989 * 109.47177 * 59.99604 * 18 16 15 38 38 H 1.09002 * 109.46630 * 180.02562 * 18 16 15 39 39 H 1.09001 * 109.46742 * 299.99229 * 18 16 15 40 40 H 1.00894 * 112.58286 * 183.18226 * 19 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5333 0.0000 0.0000 3 6 1.9905 1.4758 0.0000 4 6 2.0437 -0.6394 1.2891 5 6 1.8725 -2.1573 1.2330 6 6 2.4087 -2.7747 2.5298 7 6 2.1314 -4.2560 2.5331 8 1 1.6246 -4.7123 1.6956 9 6 2.5248 -5.0285 3.6052 10 7 3.1414 -4.4727 4.6251 11 14 2.1817 -6.8648 3.6090 12 1 2.8545 -7.4965 2.4456 13 1 2.6999 -7.4625 4.8658 14 1 0.7174 -7.0949 3.5190 15 6 2.6780 -2.6926 0.0494 16 6 2.1792 -2.0770 -1.2556 17 6 3.2060 -2.4248 -2.3563 18 6 0.8494 -2.7284 -1.6538 19 7 2.0566 -0.6357 -1.1910 20 1 -0.3633 0.5690 0.8559 21 1 -0.3634 0.4567 -0.9206 22 1 -0.3634 -1.0256 0.0649 23 1 3.0789 1.5189 0.0412 24 1 1.6417 1.9641 -0.9099 25 1 1.5736 1.9853 0.8686 26 1 3.1009 -0.3985 1.4207 27 1 1.4832 -0.2426 2.1385 28 1 0.8224 -2.4169 1.1254 29 1 3.4836 -2.6060 2.5951 30 1 1.9155 -2.3109 3.3840 31 1 3.4178 -5.0161 5.3795 32 1 3.7331 -2.4459 0.1879 33 1 2.5737 -3.7790 0.0020 34 1 3.2837 -3.5079 -2.4516 35 1 2.8801 -1.9987 -3.3051 36 1 4.1792 -2.0129 -2.0887 37 1 0.1128 -2.5603 -0.8683 38 1 0.4942 -2.2887 -2.5858 39 1 0.9963 -3.7998 -1.7909 40 1 1.6782 -0.2407 -2.0389 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000075597218.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:09:01 Heat of formation + Delta-G solvation = -34.281052 kcal Electronic energy + Delta-G solvation = -16851.380559 eV Core-core repulsion = 14471.469387 eV Total energy + Delta-G solvation = -2379.911172 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.43141 -34.66303 -34.13506 -31.89254 -28.48000 -27.33493 -27.05955 -26.37740 -25.57654 -23.14096 -20.15347 -19.63228 -17.65534 -16.26010 -15.58467 -14.80819 -14.47520 -14.09180 -13.55421 -13.51462 -12.87914 -12.69551 -12.34006 -12.25313 -12.03190 -11.88227 -11.75383 -11.34287 -11.19154 -11.11591 -11.06252 -10.76089 -10.59793 -10.56694 -10.25186 -10.14208 -9.85647 -9.43342 -8.94560 -8.78807 -8.29532 -7.74918 -5.94767 -3.96075 3.34994 3.39623 3.41790 4.32203 4.49311 5.13355 5.23371 5.33106 5.35754 5.42040 5.48910 5.59506 5.82374 5.89798 5.92142 5.97389 6.01030 6.07872 6.12662 6.16803 6.22231 6.27259 6.30328 6.43661 6.55826 6.57150 6.60119 6.76135 6.78642 7.05755 7.19376 7.24504 7.73396 7.88692 7.96189 7.98549 8.06539 8.49529 9.10288 9.67092 11.16557 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.031255 B = 0.007971 C = 0.007088 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 895.634304 B = 3511.975201 C = 3949.511681 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.147 3.853 3 C -0.140 4.140 4 C -0.103 4.103 5 C -0.080 4.080 6 C 0.028 3.972 7 C -0.513 4.513 8 H 0.054 0.946 9 C 0.056 3.944 10 N -0.896 5.896 11 Si 0.888 3.112 12 H -0.277 1.277 13 H -0.288 1.288 14 H -0.278 1.278 15 C -0.091 4.091 16 C 0.144 3.856 17 C -0.139 4.139 18 C -0.176 4.176 19 N -0.718 5.718 20 H 0.055 0.945 21 H 0.044 0.956 22 H 0.058 0.942 23 H 0.057 0.943 24 H 0.045 0.955 25 H 0.053 0.947 26 H 0.061 0.939 27 H 0.058 0.942 28 H 0.056 0.944 29 H 0.015 0.985 30 H 0.013 0.987 31 H 0.260 0.740 32 H 0.057 0.943 33 H 0.072 0.928 34 H 0.054 0.946 35 H 0.043 0.957 36 H 0.057 0.943 37 H 0.057 0.943 38 H 0.042 0.958 39 H 0.057 0.943 40 H 0.346 0.654 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.079 7.956 -11.614 14.411 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.057 3.943 3 C -0.198 4.198 4 C -0.141 4.141 5 C -0.099 4.099 6 C -0.009 4.009 7 C -0.551 4.551 8 H 0.072 0.928 9 C -0.145 4.145 10 N -0.536 5.536 11 Si 0.716 3.284 12 H -0.203 1.203 13 H -0.214 1.214 14 H -0.204 1.204 15 C -0.129 4.129 16 C 0.054 3.946 17 C -0.197 4.197 18 C -0.235 4.235 19 N -0.352 5.352 20 H 0.074 0.926 21 H 0.063 0.937 22 H 0.077 0.923 23 H 0.077 0.923 24 H 0.064 0.936 25 H 0.072 0.928 26 H 0.079 0.921 27 H 0.077 0.923 28 H 0.074 0.926 29 H 0.033 0.967 30 H 0.032 0.968 31 H 0.069 0.931 32 H 0.076 0.924 33 H 0.091 0.909 34 H 0.073 0.927 35 H 0.063 0.937 36 H 0.076 0.924 37 H 0.076 0.924 38 H 0.061 0.939 39 H 0.076 0.924 40 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -2.490 7.897 -11.152 13.890 hybrid contribution -1.042 -1.188 -0.120 1.585 sum -3.533 6.709 -11.272 13.585 Atomic orbital electron populations 1.22732 0.98001 1.02032 1.00892 1.20296 0.91067 0.92952 0.90021 1.22256 1.01618 0.95398 1.00523 1.21697 1.00994 0.96983 0.94451 1.21101 0.98961 0.92363 0.97438 1.19190 0.96143 0.94927 0.90645 1.21212 1.37229 0.93360 1.03350 0.92803 1.25010 0.95426 0.98279 0.95742 1.69949 1.40242 1.35646 1.07760 0.86732 0.78536 0.85948 0.77226 1.20297 1.21360 1.20378 1.21549 0.99497 1.00233 0.91629 1.20386 0.93201 0.84697 0.96362 1.22246 0.99438 1.00544 0.97493 1.22714 0.99268 1.01188 1.00344 1.54572 1.68485 1.08087 1.04103 0.92590 0.93656 0.92310 0.92349 0.93603 0.92792 0.92071 0.92283 0.92601 0.96671 0.96844 0.93068 0.92392 0.90942 0.92655 0.93749 0.92402 0.92435 0.93850 0.92426 0.83111 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.41 8.25 37.33 0.31 -2.10 16 2 C 0.15 2.14 0.92 -131.94 -0.12 2.01 16 3 C -0.14 -1.77 8.53 37.94 0.32 -1.44 16 4 C -0.10 -1.83 3.94 -26.96 -0.11 -1.94 16 5 C -0.08 -1.64 1.98 -90.61 -0.18 -1.82 16 6 C 0.03 0.72 4.43 -27.72 -0.12 0.60 16 7 C -0.51 -14.39 8.41 -34.44 -0.29 -14.68 16 8 H 0.05 1.47 7.14 -52.48 -0.37 1.09 16 9 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 10 N -0.90 -27.13 13.29 55.43 0.74 -26.40 16 11 Si 0.89 21.81 29.54 -169.99 -5.02 16.78 16 12 H -0.28 -6.69 7.11 56.52 0.40 -6.28 16 13 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 14 H -0.28 -6.73 7.11 56.52 0.40 -6.32 16 15 C -0.09 -1.73 3.77 -26.98 -0.10 -1.83 16 16 C 0.14 2.19 0.93 -131.94 -0.12 2.07 16 17 C -0.14 -1.89 8.52 37.94 0.32 -1.56 16 18 C -0.18 -2.54 8.25 37.34 0.31 -2.23 16 19 N -0.72 -10.12 4.80 -87.43 -0.42 -10.54 16 20 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 21 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 22 H 0.06 0.88 5.13 -51.93 -0.27 0.61 16 23 H 0.06 0.77 8.12 -51.93 -0.42 0.35 16 24 H 0.04 0.51 8.14 -51.93 -0.42 0.09 16 25 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 26 H 0.06 1.13 8.05 -51.80 -0.42 0.71 16 27 H 0.06 1.04 8.08 -51.80 -0.42 0.62 16 28 H 0.06 1.18 6.20 -52.10 -0.32 0.86 16 29 H 0.01 0.42 8.14 -51.93 -0.42 -0.01 16 30 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 32 H 0.06 1.15 8.05 -51.80 -0.42 0.74 16 33 H 0.07 1.49 6.96 -51.79 -0.36 1.13 16 34 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.04 0.53 8.14 -51.93 -0.42 0.10 16 36 H 0.06 0.81 8.12 -51.92 -0.42 0.39 16 37 H 0.06 0.90 5.15 -51.93 -0.27 0.63 16 38 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 39 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 40 H 0.35 4.29 8.81 -39.29 -0.35 3.95 16 LS Contribution 301.88 15.07 4.55 4.55 Total: -1.00 -29.00 301.88 -7.43 -36.43 By element: Atomic # 1 Polarization: 7.99 SS G_CDS: -7.40 Total: 0.59 kcal Atomic # 6 Polarization: -21.54 SS G_CDS: 0.12 Total: -21.42 kcal Atomic # 7 Polarization: -37.26 SS G_CDS: 0.32 Total: -36.94 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.02 Total: 16.78 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -29.00 -7.43 -36.43 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075597218.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.149 kcal (2) G-P(sol) polarization free energy of solvation -29.000 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.851 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.430 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.430 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.281 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds