Wall clock time and date at job start Mon Mar 30 2020 03:09:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53326 * 1 3 3 C 1.54499 * 107.21499 * 2 1 4 4 C 1.52686 * 109.53114 * 116.38201 * 2 1 3 5 5 C 1.52858 * 110.32662 * 75.03749 * 4 2 1 6 6 C 1.53310 * 109.24284 * 179.27028 * 5 4 2 7 7 C 1.50704 * 109.46976 * 174.99749 * 6 5 4 8 8 H 1.08005 * 119.99631 * 0.02562 * 7 6 5 9 9 C 1.37875 * 119.99951 * 180.02562 * 7 6 5 10 10 N 1.31507 * 120.00217 * 0.02562 * 9 7 6 11 11 Si 1.86808 * 119.99890 * 180.02562 * 9 7 6 12 12 H 1.48500 * 109.46928 * 59.99960 * 11 9 7 13 13 H 1.48499 * 109.46710 * 180.02562 * 11 9 7 14 14 H 1.48497 * 109.46694 * 299.99967 * 11 9 7 15 15 C 1.52852 * 108.49186 * 60.26420 * 5 4 2 16 16 C 1.52663 * 110.39360 * 299.88685 * 15 5 4 17 17 C 1.54499 * 107.52224 * 168.50042 * 16 15 5 18 18 C 1.53348 * 109.51394 * 284.65885 * 16 15 5 19 19 N 1.44792 * 113.01661 * 49.17555 * 16 15 5 20 20 H 1.09005 * 109.47039 * 303.61525 * 1 2 3 21 21 H 1.09001 * 109.47483 * 63.61542 * 1 2 3 22 22 H 1.09002 * 109.47222 * 183.62105 * 1 2 3 23 23 H 1.08998 * 109.46790 * 177.70355 * 3 2 1 24 24 H 1.08996 * 109.46486 * 297.69834 * 3 2 1 25 25 H 1.08994 * 109.47153 * 57.70494 * 3 2 1 26 26 H 1.09223 * 109.44396 * 195.44518 * 4 2 1 27 27 H 1.09229 * 109.44438 * 314.63805 * 4 2 1 28 28 H 1.08699 * 110.42813 * 299.12421 * 5 4 2 29 29 H 1.08997 * 109.47274 * 295.00110 * 6 5 4 30 30 H 1.08997 * 109.46782 * 55.00499 * 6 5 4 31 31 H 0.96995 * 120.00523 * 179.97438 * 10 9 7 32 32 H 1.09234 * 109.37473 * 60.36482 * 15 5 4 33 33 H 1.09242 * 109.36236 * 179.42489 * 15 5 4 34 34 H 1.09006 * 109.47260 * 59.99497 * 17 16 15 35 35 H 1.08999 * 109.47511 * 180.02562 * 17 16 15 36 36 H 1.09009 * 109.46747 * 299.99860 * 17 16 15 37 37 H 1.08989 * 109.47177 * 59.99604 * 18 16 15 38 38 H 1.09002 * 109.46630 * 180.02562 * 18 16 15 39 39 H 1.09001 * 109.46742 * 299.99229 * 18 16 15 40 40 H 1.00894 * 112.58286 * 183.18226 * 19 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5333 0.0000 0.0000 3 6 1.9905 1.4758 0.0000 4 6 2.0437 -0.6394 1.2891 5 6 1.8725 -2.1573 1.2330 6 6 2.4087 -2.7747 2.5298 7 6 2.1314 -4.2560 2.5331 8 1 1.6246 -4.7123 1.6956 9 6 2.5248 -5.0285 3.6052 10 7 3.1414 -4.4727 4.6251 11 14 2.1817 -6.8648 3.6090 12 1 2.8545 -7.4965 2.4456 13 1 2.6999 -7.4625 4.8658 14 1 0.7174 -7.0949 3.5190 15 6 2.6780 -2.6926 0.0494 16 6 2.1792 -2.0770 -1.2556 17 6 3.2060 -2.4248 -2.3563 18 6 0.8494 -2.7284 -1.6538 19 7 2.0566 -0.6357 -1.1910 20 1 -0.3633 0.5690 0.8559 21 1 -0.3634 0.4567 -0.9206 22 1 -0.3634 -1.0256 0.0649 23 1 3.0789 1.5189 0.0412 24 1 1.6417 1.9641 -0.9099 25 1 1.5736 1.9853 0.8686 26 1 3.1009 -0.3985 1.4207 27 1 1.4832 -0.2426 2.1385 28 1 0.8224 -2.4169 1.1254 29 1 3.4836 -2.6060 2.5951 30 1 1.9155 -2.3109 3.3840 31 1 3.4178 -5.0161 5.3795 32 1 3.7331 -2.4459 0.1879 33 1 2.5737 -3.7790 0.0020 34 1 3.2837 -3.5079 -2.4516 35 1 2.8801 -1.9987 -3.3051 36 1 4.1792 -2.0129 -2.0887 37 1 0.1128 -2.5603 -0.8683 38 1 0.4942 -2.2887 -2.5858 39 1 0.9963 -3.7998 -1.7909 40 1 1.6782 -0.2407 -2.0389 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000075597218.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:09:01 Heat of formation + Delta-G solvation = -51.343531 kcal Electronic energy + Delta-G solvation = -16852.120443 eV Core-core repulsion = 14471.469387 eV Total energy + Delta-G solvation = -2380.651056 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.76721 -36.02720 -35.83447 -33.89211 -29.73257 -28.95642 -28.40480 -27.45444 -27.01846 -25.13707 -21.38186 -21.31796 -19.09622 -18.41093 -16.87516 -16.50252 -16.05834 -15.56609 -14.93311 -14.74949 -14.21051 -14.08276 -13.97116 -13.71600 -13.50413 -13.12811 -12.95333 -12.87673 -12.70182 -12.55784 -12.41276 -12.36633 -12.24618 -12.01685 -11.94486 -11.62725 -11.44601 -11.16948 -10.80403 -10.55509 -10.49199 -8.88165 -8.18023 -6.27817 1.37652 1.40581 1.48298 2.40483 3.14324 3.18101 3.89733 3.99207 4.00034 4.13400 4.23746 4.35706 4.61058 4.63096 4.68321 4.79764 4.82123 4.88567 4.94227 5.01725 5.04714 5.06580 5.10521 5.15824 5.23905 5.27352 5.34690 5.36531 5.42245 5.45061 5.53195 5.57042 5.62880 5.81000 5.90155 6.28481 6.74725 6.87659 6.93951 7.40324 8.93768 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.031255 B = 0.007971 C = 0.007088 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 895.634304 B = 3511.975201 C = 3949.511681 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.149 3.851 3 C -0.133 4.133 4 C -0.100 4.100 5 C -0.069 4.069 6 C 0.034 3.966 7 C -0.528 4.528 8 H 0.059 0.941 9 C -0.002 4.002 10 N -0.935 5.935 11 Si 0.959 3.041 12 H -0.267 1.267 13 H -0.284 1.284 14 H -0.268 1.268 15 C -0.085 4.085 16 C 0.148 3.852 17 C -0.134 4.134 18 C -0.171 4.171 19 N -0.716 5.716 20 H 0.058 0.942 21 H 0.069 0.931 22 H 0.041 0.959 23 H 0.049 0.951 24 H 0.068 0.932 25 H 0.059 0.941 26 H 0.047 0.953 27 H 0.054 0.946 28 H 0.050 0.950 29 H -0.016 1.016 30 H -0.017 1.017 31 H 0.262 0.738 32 H 0.040 0.960 33 H 0.051 0.949 34 H 0.054 0.946 35 H 0.069 0.931 36 H 0.049 0.951 37 H 0.042 0.958 38 H 0.070 0.930 39 H 0.053 0.947 40 H 0.364 0.636 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.107 8.201 -13.898 16.652 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.058 3.942 3 C -0.191 4.191 4 C -0.138 4.138 5 C -0.088 4.088 6 C -0.003 4.003 7 C -0.566 4.566 8 H 0.077 0.923 9 C -0.199 4.199 10 N -0.576 5.576 11 Si 0.784 3.216 12 H -0.191 1.191 13 H -0.209 1.209 14 H -0.193 1.193 15 C -0.123 4.123 16 C 0.057 3.943 17 C -0.192 4.192 18 C -0.231 4.231 19 N -0.353 5.353 20 H 0.077 0.923 21 H 0.088 0.912 22 H 0.060 0.940 23 H 0.068 0.932 24 H 0.087 0.913 25 H 0.078 0.922 26 H 0.066 0.934 27 H 0.073 0.927 28 H 0.069 0.931 29 H 0.003 0.997 30 H 0.002 0.998 31 H 0.071 0.929 32 H 0.058 0.942 33 H 0.070 0.930 34 H 0.073 0.927 35 H 0.088 0.912 36 H 0.068 0.932 37 H 0.061 0.939 38 H 0.089 0.911 39 H 0.072 0.928 40 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges -3.528 8.155 -13.461 16.130 hybrid contribution -0.699 -1.242 0.647 1.566 sum -4.228 6.913 -12.814 15.161 Atomic orbital electron populations 1.22676 0.96857 1.01291 1.02369 1.20235 0.91832 0.93827 0.88283 1.22181 1.01140 0.93780 1.02020 1.21644 1.00337 0.94995 0.96865 1.20905 0.98308 0.94272 0.95303 1.19087 0.93992 0.94685 0.92568 1.21584 1.37038 0.94463 1.03533 0.92308 1.25957 0.95102 1.03594 0.95281 1.70095 1.41342 1.37648 1.08515 0.85590 0.78859 0.79585 0.77585 1.19146 1.20904 1.19278 1.21440 0.98296 0.99220 0.93379 1.20248 0.94236 0.85371 0.94395 1.22181 0.98425 1.00725 0.97828 1.22663 0.98170 1.01128 1.01110 1.54512 1.68850 1.07305 1.04662 0.92292 0.91162 0.94014 0.93162 0.91265 0.92222 0.93439 0.92717 0.93144 0.99738 0.99844 0.92933 0.94165 0.93000 0.92667 0.91156 0.93185 0.93881 0.91109 0.92799 0.81103 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.29 8.25 72.09 0.59 -3.69 16 2 C 0.15 4.06 0.92 4.44 0.00 4.07 16 3 C -0.13 -3.02 8.53 72.49 0.62 -2.40 16 4 C -0.10 -3.63 3.94 30.44 0.12 -3.51 16 5 C -0.07 -2.94 1.98 -10.79 -0.02 -2.96 16 6 C 0.03 1.84 4.43 29.95 0.13 1.97 16 7 C -0.53 -30.55 8.41 25.60 0.22 -30.33 16 8 H 0.06 3.27 7.14 -2.91 -0.02 3.25 16 9 C 0.00 -0.12 5.46 84.66 0.46 0.34 16 10 N -0.94 -58.37 13.29 21.45 0.28 -58.08 16 11 Si 0.96 45.16 29.54 68.60 2.03 47.19 16 12 H -0.27 -12.02 7.11 99.48 0.71 -11.32 16 13 H -0.28 -13.08 7.11 99.48 0.71 -12.37 16 14 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 15 C -0.09 -3.30 3.77 30.43 0.11 -3.19 16 16 C 0.15 4.27 0.93 4.44 0.00 4.28 16 17 C -0.13 -3.32 8.52 72.49 0.62 -2.70 16 18 C -0.17 -4.58 8.25 72.10 0.59 -3.98 16 19 N -0.72 -18.45 4.80 -430.53 -2.07 -20.52 16 20 H 0.06 1.42 8.14 -2.38 -0.02 1.40 16 21 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 22 H 0.04 1.18 5.13 -2.39 -0.01 1.17 16 23 H 0.05 1.22 8.12 -2.39 -0.02 1.21 16 24 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 25 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 26 H 0.05 1.81 8.05 -2.27 -0.02 1.80 16 27 H 0.05 1.98 8.08 -2.27 -0.02 1.96 16 28 H 0.05 2.19 6.20 -2.55 -0.02 2.18 16 29 H -0.02 -0.94 8.14 -2.39 -0.02 -0.96 16 30 H -0.02 -1.00 8.14 -2.39 -0.02 -1.02 16 31 H 0.26 15.40 8.31 -92.71 -0.77 14.63 16 32 H 0.04 1.66 8.05 -2.26 -0.02 1.64 16 33 H 0.05 2.18 6.96 -2.26 -0.02 2.17 16 34 H 0.05 1.37 8.14 -2.38 -0.02 1.35 16 35 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 36 H 0.05 1.32 8.12 -2.38 -0.02 1.30 16 37 H 0.04 1.27 5.15 -2.39 -0.01 1.26 16 38 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 39 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16 40 H 0.36 7.51 8.81 -89.70 -0.79 6.72 16 Total: -1.00 -64.27 301.88 3.90 -60.37 By element: Atomic # 1 Polarization: 12.97 SS G_CDS: 0.19 Total: 13.16 kcal Atomic # 6 Polarization: -45.57 SS G_CDS: 3.46 Total: -42.12 kcal Atomic # 7 Polarization: -76.82 SS G_CDS: -1.78 Total: -78.60 kcal Atomic # 14 Polarization: 45.16 SS G_CDS: 2.03 Total: 47.19 kcal Total: -64.27 3.90 -60.37 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075597218.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.025 kcal (2) G-P(sol) polarization free energy of solvation -64.266 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.241 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.897 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.369 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.344 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds