Wall clock time and date at job start Mon Mar 30 2020 03:26:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52995 * 109.47260 * 2 1 4 4 C 1.52999 * 109.47107 * 239.99408 * 2 1 3 5 5 C 1.53001 * 109.46700 * 120.00077 * 2 1 3 6 6 C 1.53513 * 114.17314 * 54.97013 * 5 2 1 7 7 N 1.47482 * 87.92947 * 220.32800 * 6 5 2 8 8 C 1.46902 * 110.99618 * 138.70195 * 7 6 5 9 9 C 1.53006 * 109.46759 * 169.99865 * 8 7 6 10 10 C 1.53006 * 109.46903 * 180.02562 * 9 8 7 11 11 C 1.50700 * 109.46914 * 180.02562 * 10 9 8 12 12 H 1.08001 * 120.00080 * 359.97438 * 11 10 9 13 13 C 1.37880 * 120.00020 * 180.02562 * 11 10 9 14 14 N 1.31513 * 119.99831 * 180.02562 * 13 11 10 15 15 Si 1.86801 * 119.99903 * 359.97438 * 13 11 10 16 16 H 1.48494 * 109.47040 * 90.00008 * 15 13 11 17 17 H 1.48501 * 109.47113 * 210.00302 * 15 13 11 18 18 H 1.48508 * 109.46735 * 330.00002 * 15 13 11 19 19 C 1.47481 * 87.83923 * 27.00926 * 7 6 5 20 20 H 1.08995 * 109.47094 * 306.38729 * 1 2 3 21 21 H 1.09004 * 109.46480 * 66.38468 * 1 2 3 22 22 H 1.08999 * 109.47341 * 186.38208 * 1 2 3 23 23 H 1.09002 * 109.47102 * 179.97438 * 3 2 1 24 24 H 1.08999 * 109.47109 * 299.99173 * 3 2 1 25 25 H 1.08991 * 109.47340 * 60.00040 * 3 2 1 26 26 H 1.09002 * 109.47576 * 300.00492 * 4 2 1 27 27 H 1.09007 * 109.47197 * 60.00467 * 4 2 1 28 28 H 1.09002 * 109.47088 * 180.02562 * 4 2 1 29 29 H 1.09003 * 113.37995 * 188.04641 * 5 2 1 30 30 H 1.08998 * 113.47838 * 105.55874 * 6 5 2 31 31 H 1.08994 * 113.47375 * 335.09232 * 6 5 2 32 32 H 1.09000 * 109.47311 * 50.00469 * 8 7 6 33 33 H 1.08993 * 109.47497 * 289.99525 * 8 7 6 34 34 H 1.09000 * 109.47437 * 60.00044 * 9 8 7 35 35 H 1.09002 * 109.47395 * 299.99959 * 9 8 7 36 36 H 1.09000 * 109.46792 * 60.00279 * 10 9 8 37 37 H 1.08993 * 109.46961 * 299.99980 * 10 9 8 38 38 H 0.96999 * 119.99611 * 179.97438 * 14 13 11 39 39 H 1.09002 * 113.47462 * 87.75110 * 19 7 6 40 40 H 1.09001 * 113.47475 * 218.22202 * 19 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7214 -1.2492 5 6 2.0399 -0.7213 1.2493 6 6 1.4915 -2.1448 1.4211 7 7 1.3647 -1.8643 2.8635 8 6 0.1073 -2.4055 3.3964 9 6 0.1220 -2.3194 4.9240 10 6 -1.1875 -2.8836 5.4792 11 6 -1.1733 -2.7982 6.9837 12 1 -0.3160 -2.3835 7.4930 13 6 -2.2544 -3.2506 7.7101 14 7 -2.2422 -3.1756 9.0230 15 14 -3.7370 -3.9686 6.8292 16 1 -3.5524 -5.4325 6.6621 17 1 -4.9608 -3.7122 7.6303 18 1 -3.8763 -3.3316 5.4949 19 6 1.2214 -0.4380 2.5167 20 1 -0.3633 0.6096 0.8273 21 1 -0.3632 0.4117 -0.9417 22 1 -0.3634 -1.0213 0.1142 23 1 3.1301 1.4424 0.0005 24 1 1.6768 1.9562 -0.8901 25 1 1.6768 1.9563 0.8899 26 1 1.6766 -1.7490 -1.2492 27 1 1.6767 -0.2076 -2.1393 28 1 3.1300 -0.7218 -1.2489 29 1 3.1181 -0.6388 1.3866 30 1 2.2209 -2.9217 1.1923 31 1 0.5347 -2.3043 0.9241 32 1 0.0020 -3.4468 3.0923 33 1 -0.7308 -1.8269 3.0080 34 1 0.2272 -1.2780 5.2283 35 1 0.9601 -2.8979 5.3126 36 1 -1.2922 -3.9250 5.1749 37 1 -2.0258 -2.3054 5.0907 38 1 -3.0030 -3.4935 9.5340 39 1 0.1925 -0.1423 2.3120 40 1 1.7219 0.2314 3.2164 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000086681659.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:26:57 Heat of formation + Delta-G solvation = 8.956767 kcal Electronic energy + Delta-G solvation = -15835.706604 eV Core-core repulsion = 13457.670365 eV Total energy + Delta-G solvation = -2378.036239 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.67268 -36.31034 -33.99185 -31.91126 -28.87179 -27.74800 -27.54088 -25.66696 -25.36795 -22.39406 -20.48275 -20.01262 -18.21641 -16.69013 -15.84762 -15.67608 -15.08213 -14.36229 -14.17974 -14.02936 -13.30531 -13.20748 -12.85161 -12.65769 -12.41200 -12.29985 -12.05366 -11.72100 -11.49117 -11.34215 -11.09652 -10.99633 -10.68884 -10.58601 -10.47271 -10.18766 -9.84807 -9.64277 -9.44556 -9.13080 -8.60725 -8.49902 -6.00285 -3.97650 3.32696 3.39567 3.43424 4.16627 4.31566 4.48377 4.55187 4.75119 4.93669 5.07611 5.26934 5.32967 5.36752 5.42768 5.43883 5.49143 5.53311 5.62552 5.67411 5.76376 5.77074 5.81070 5.88844 5.89949 6.00150 6.09862 6.16616 6.21217 6.34221 6.41449 6.65317 6.74263 6.99893 7.30067 7.41424 7.51475 7.84690 8.59911 9.05767 9.62480 11.13444 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.050973 B = 0.004745 C = 0.004644 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 549.174355 B = 5899.911507 C = 6027.214568 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.059 4.059 3 C -0.139 4.139 4 C -0.139 4.139 5 C -0.106 4.106 6 C -0.002 4.002 7 N -0.471 5.471 8 C 0.019 3.981 9 C -0.091 4.091 10 C -0.014 4.014 11 C -0.517 4.517 12 H 0.072 0.928 13 C 0.065 3.935 14 N -0.905 5.905 15 Si 0.881 3.119 16 H -0.277 1.277 17 H -0.288 1.288 18 H -0.267 1.267 19 C -0.001 4.001 20 H 0.060 0.940 21 H 0.054 0.946 22 H 0.057 0.943 23 H 0.054 0.946 24 H 0.052 0.948 25 H 0.056 0.944 26 H 0.055 0.945 27 H 0.052 0.948 28 H 0.054 0.946 29 H 0.098 0.902 30 H 0.078 0.922 31 H 0.068 0.932 32 H 0.065 0.935 33 H 0.038 0.962 34 H 0.051 0.949 35 H 0.059 0.941 36 H 0.010 0.990 37 H 0.012 0.988 38 H 0.262 0.738 39 H 0.075 0.925 40 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.904 6.369 -21.143 23.136 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.060 4.060 3 C -0.196 4.196 4 C -0.196 4.196 5 C -0.124 4.124 6 C -0.131 4.131 7 N -0.192 5.192 8 C -0.110 4.110 9 C -0.129 4.129 10 C -0.052 4.052 11 C -0.555 4.555 12 H 0.090 0.910 13 C -0.136 4.136 14 N -0.545 5.545 15 Si 0.708 3.292 16 H -0.203 1.203 17 H -0.214 1.214 18 H -0.191 1.191 19 C -0.130 4.130 20 H 0.079 0.921 21 H 0.073 0.927 22 H 0.076 0.924 23 H 0.073 0.927 24 H 0.071 0.929 25 H 0.075 0.925 26 H 0.074 0.926 27 H 0.071 0.929 28 H 0.073 0.927 29 H 0.116 0.884 30 H 0.096 0.904 31 H 0.086 0.914 32 H 0.084 0.916 33 H 0.057 0.943 34 H 0.070 0.930 35 H 0.078 0.922 36 H 0.028 0.972 37 H 0.031 0.969 38 H 0.072 0.928 39 H 0.092 0.908 40 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 7.281 6.078 -20.474 22.564 hybrid contribution -1.608 -0.266 -0.729 1.786 sum 5.673 5.812 -21.203 22.705 Atomic orbital electron populations 1.22079 0.94809 1.02047 1.01725 1.20433 0.95430 0.95445 0.94689 1.21827 1.00892 0.95248 1.01671 1.21824 1.00948 1.00280 0.96552 1.22815 1.00252 0.95530 0.93840 1.23892 1.00662 0.97511 0.91036 1.68917 1.32461 1.04930 1.12913 1.22862 0.89770 0.99592 0.98730 1.21333 0.99838 1.01023 0.90730 1.19569 0.93148 0.95401 0.97063 1.21164 1.03976 1.40853 0.89548 0.91027 1.25043 0.98380 0.95462 0.94710 1.69922 1.31267 1.47890 1.05377 0.86767 0.82539 0.79790 0.80101 1.20308 1.21416 1.19143 1.24051 0.99982 0.92882 0.96079 0.92134 0.92722 0.92418 0.92681 0.92875 0.92477 0.92599 0.92877 0.92667 0.88375 0.90376 0.91357 0.91604 0.94345 0.92980 0.92183 0.97189 0.96947 0.92807 0.90753 0.90242 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.37 7.41 37.16 0.28 -1.10 16 2 C -0.06 -0.53 0.71 -154.51 -0.11 -0.63 16 3 C -0.14 -1.13 8.46 37.15 0.31 -0.82 16 4 C -0.14 -1.10 8.33 37.16 0.31 -0.79 16 5 C -0.11 -1.12 3.36 -90.09 -0.30 -1.43 16 6 C 0.00 -0.03 6.39 -7.53 -0.05 -0.07 16 7 N -0.47 -7.19 6.33 -244.60 -1.55 -8.74 16 8 C 0.02 0.32 4.82 -3.82 -0.02 0.30 16 9 C -0.09 -1.93 5.48 -26.73 -0.15 -2.08 16 10 C -0.01 -0.34 4.04 -27.88 -0.11 -0.46 16 11 C -0.52 -15.31 9.66 -34.44 -0.33 -15.64 16 12 H 0.07 2.28 7.99 -52.49 -0.42 1.86 16 13 C 0.06 1.94 5.47 -17.82 -0.10 1.84 16 14 N -0.91 -28.60 13.96 55.43 0.77 -27.83 16 15 Si 0.88 22.24 27.47 -169.99 -4.67 17.57 16 16 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 17 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 18 H -0.27 -6.47 6.54 56.52 0.37 -6.10 16 19 C 0.00 -0.01 7.01 -7.53 -0.05 -0.07 16 20 H 0.06 0.59 6.52 -51.93 -0.34 0.25 16 21 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 22 H 0.06 0.56 6.04 -51.93 -0.31 0.25 16 23 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 24 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 25 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 26 H 0.05 0.45 7.64 -51.93 -0.40 0.05 16 27 H 0.05 0.38 8.14 -51.92 -0.42 -0.04 16 28 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 29 H 0.10 1.05 8.14 -51.93 -0.42 0.62 16 30 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 31 H 0.07 0.79 5.83 -51.93 -0.30 0.49 16 32 H 0.07 1.12 8.08 -51.93 -0.42 0.70 16 33 H 0.04 0.64 7.30 -51.93 -0.38 0.26 16 34 H 0.05 1.12 8.14 -51.93 -0.42 0.70 16 35 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 36 H 0.01 0.24 7.57 -51.93 -0.39 -0.15 16 37 H 0.01 0.30 7.20 -51.93 -0.37 -0.07 16 38 H 0.26 7.73 8.31 -40.82 -0.34 7.39 16 39 H 0.07 0.95 4.95 -51.93 -0.26 0.70 16 40 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 LS Contribution 306.63 15.07 4.62 4.62 Total: -1.00 -31.02 306.63 -8.55 -39.58 By element: Atomic # 1 Polarization: 3.15 SS G_CDS: -7.41 Total: -4.26 kcal Atomic # 6 Polarization: -20.61 SS G_CDS: -0.32 Total: -20.93 kcal Atomic # 7 Polarization: -35.79 SS G_CDS: -0.78 Total: -36.57 kcal Atomic # 14 Polarization: 22.24 SS G_CDS: -4.67 Total: 17.57 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -31.02 -8.55 -39.58 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000086681659.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.532 kcal (2) G-P(sol) polarization free energy of solvation -31.020 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.511 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.555 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.575 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.957 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds