Wall clock time and date at job start Mon Mar 30 2020 03:26:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52995 * 109.47260 * 2 1 4 4 C 1.52999 * 109.47107 * 239.99408 * 2 1 3 5 5 C 1.53001 * 109.46700 * 120.00077 * 2 1 3 6 6 C 1.53513 * 114.17314 * 54.97013 * 5 2 1 7 7 N 1.47482 * 87.92947 * 220.32800 * 6 5 2 8 8 C 1.46902 * 110.99618 * 138.70195 * 7 6 5 9 9 C 1.53006 * 109.46759 * 169.99865 * 8 7 6 10 10 C 1.53006 * 109.46903 * 180.02562 * 9 8 7 11 11 C 1.50700 * 109.46914 * 180.02562 * 10 9 8 12 12 H 1.08001 * 120.00080 * 359.97438 * 11 10 9 13 13 C 1.37880 * 120.00020 * 180.02562 * 11 10 9 14 14 N 1.31513 * 119.99831 * 180.02562 * 13 11 10 15 15 Si 1.86801 * 119.99903 * 359.97438 * 13 11 10 16 16 H 1.48494 * 109.47040 * 90.00008 * 15 13 11 17 17 H 1.48501 * 109.47113 * 210.00302 * 15 13 11 18 18 H 1.48508 * 109.46735 * 330.00002 * 15 13 11 19 19 C 1.47481 * 87.83923 * 27.00926 * 7 6 5 20 20 H 1.08995 * 109.47094 * 306.38729 * 1 2 3 21 21 H 1.09004 * 109.46480 * 66.38468 * 1 2 3 22 22 H 1.08999 * 109.47341 * 186.38208 * 1 2 3 23 23 H 1.09002 * 109.47102 * 179.97438 * 3 2 1 24 24 H 1.08999 * 109.47109 * 299.99173 * 3 2 1 25 25 H 1.08991 * 109.47340 * 60.00040 * 3 2 1 26 26 H 1.09002 * 109.47576 * 300.00492 * 4 2 1 27 27 H 1.09007 * 109.47197 * 60.00467 * 4 2 1 28 28 H 1.09002 * 109.47088 * 180.02562 * 4 2 1 29 29 H 1.09003 * 113.37995 * 188.04641 * 5 2 1 30 30 H 1.08998 * 113.47838 * 105.55874 * 6 5 2 31 31 H 1.08994 * 113.47375 * 335.09232 * 6 5 2 32 32 H 1.09000 * 109.47311 * 50.00469 * 8 7 6 33 33 H 1.08993 * 109.47497 * 289.99525 * 8 7 6 34 34 H 1.09000 * 109.47437 * 60.00044 * 9 8 7 35 35 H 1.09002 * 109.47395 * 299.99959 * 9 8 7 36 36 H 1.09000 * 109.46792 * 60.00279 * 10 9 8 37 37 H 1.08993 * 109.46961 * 299.99980 * 10 9 8 38 38 H 0.96999 * 119.99611 * 179.97438 * 14 13 11 39 39 H 1.09002 * 113.47462 * 87.75110 * 19 7 6 40 40 H 1.09001 * 113.47475 * 218.22202 * 19 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7214 -1.2492 5 6 2.0399 -0.7213 1.2493 6 6 1.4915 -2.1448 1.4211 7 7 1.3647 -1.8643 2.8635 8 6 0.1073 -2.4055 3.3964 9 6 0.1220 -2.3194 4.9240 10 6 -1.1875 -2.8836 5.4792 11 6 -1.1733 -2.7982 6.9837 12 1 -0.3160 -2.3835 7.4930 13 6 -2.2544 -3.2506 7.7101 14 7 -2.2422 -3.1756 9.0230 15 14 -3.7370 -3.9686 6.8292 16 1 -3.5524 -5.4325 6.6621 17 1 -4.9608 -3.7122 7.6303 18 1 -3.8763 -3.3316 5.4949 19 6 1.2214 -0.4380 2.5167 20 1 -0.3633 0.6096 0.8273 21 1 -0.3632 0.4117 -0.9417 22 1 -0.3634 -1.0213 0.1142 23 1 3.1301 1.4424 0.0005 24 1 1.6768 1.9562 -0.8901 25 1 1.6768 1.9563 0.8899 26 1 1.6766 -1.7490 -1.2492 27 1 1.6767 -0.2076 -2.1393 28 1 3.1300 -0.7218 -1.2489 29 1 3.1181 -0.6388 1.3866 30 1 2.2209 -2.9217 1.1923 31 1 0.5347 -2.3043 0.9241 32 1 0.0020 -3.4468 3.0923 33 1 -0.7308 -1.8269 3.0080 34 1 0.2272 -1.2780 5.2283 35 1 0.9601 -2.8979 5.3126 36 1 -1.2922 -3.9250 5.1749 37 1 -2.0258 -2.3054 5.0907 38 1 -3.0030 -3.4935 9.5340 39 1 0.1925 -0.1423 2.3120 40 1 1.7219 0.2314 3.2164 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000086681659.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:26:57 Heat of formation + Delta-G solvation = -11.199387 kcal Electronic energy + Delta-G solvation = -15836.580641 eV Core-core repulsion = 13457.670365 eV Total energy + Delta-G solvation = -2378.910275 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.65814 -37.29541 -35.80181 -33.91919 -30.45906 -28.43031 -28.21886 -27.18930 -26.39996 -23.95627 -21.88330 -21.45524 -19.14495 -18.80173 -16.87228 -16.79342 -16.29477 -16.17035 -15.42037 -14.95422 -14.74159 -14.37821 -14.23381 -13.91681 -13.71437 -13.27065 -13.01688 -12.90118 -12.70569 -12.50880 -12.39570 -12.26420 -11.91102 -11.79390 -11.66944 -11.49311 -11.37248 -11.31966 -11.04380 -10.93322 -10.78102 -9.74239 -8.30965 -6.35834 1.34519 1.36908 1.49142 2.35287 3.03932 3.09904 3.44018 3.73584 4.00303 4.01171 4.18857 4.24347 4.28691 4.43471 4.55715 4.64042 4.68638 4.71783 4.74668 4.81147 4.85203 4.91691 4.93825 4.98634 5.08869 5.09893 5.12212 5.19862 5.28338 5.37654 5.40850 5.50733 5.54690 5.58427 5.62444 5.65130 6.16114 6.28744 6.72129 7.28729 8.86352 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.050973 B = 0.004745 C = 0.004644 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 549.174355 B = 5899.911507 C = 6027.214568 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.056 4.056 3 C -0.138 4.138 4 C -0.137 4.137 5 C -0.089 4.089 6 C 0.001 3.999 7 N -0.495 5.495 8 C 0.031 3.969 9 C -0.083 4.083 10 C -0.009 4.009 11 C -0.537 4.537 12 H 0.026 0.974 13 C 0.002 3.998 14 N -0.953 5.953 15 Si 0.956 3.044 16 H -0.265 1.265 17 H -0.282 1.282 18 H -0.246 1.246 19 C -0.006 4.006 20 H 0.052 0.948 21 H 0.066 0.934 22 H 0.052 0.948 23 H 0.059 0.941 24 H 0.063 0.937 25 H 0.049 0.951 26 H 0.054 0.946 27 H 0.062 0.938 28 H 0.058 0.942 29 H 0.099 0.901 30 H 0.084 0.916 31 H 0.078 0.922 32 H 0.071 0.929 33 H 0.047 0.953 34 H 0.039 0.961 35 H 0.043 0.957 36 H 0.020 0.980 37 H 0.020 0.980 38 H 0.267 0.733 39 H 0.078 0.922 40 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.123 6.123 -24.092 25.601 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.056 4.056 3 C -0.196 4.196 4 C -0.194 4.194 5 C -0.108 4.108 6 C -0.127 4.127 7 N -0.217 5.217 8 C -0.098 4.098 9 C -0.121 4.121 10 C -0.047 4.047 11 C -0.574 4.574 12 H 0.044 0.956 13 C -0.195 4.195 14 N -0.594 5.594 15 Si 0.779 3.221 16 H -0.190 1.190 17 H -0.207 1.207 18 H -0.169 1.169 19 C -0.135 4.135 20 H 0.071 0.929 21 H 0.085 0.915 22 H 0.071 0.929 23 H 0.078 0.922 24 H 0.082 0.918 25 H 0.068 0.932 26 H 0.073 0.927 27 H 0.081 0.919 28 H 0.078 0.922 29 H 0.118 0.882 30 H 0.102 0.898 31 H 0.096 0.904 32 H 0.090 0.910 33 H 0.065 0.935 34 H 0.058 0.942 35 H 0.062 0.938 36 H 0.038 0.962 37 H 0.038 0.962 38 H 0.076 0.924 39 H 0.096 0.904 40 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 6.523 5.842 -23.441 25.023 hybrid contribution -1.268 -0.135 0.271 1.303 sum 5.255 5.706 -23.170 24.434 Atomic orbital electron populations 1.22079 0.94938 1.01619 1.02049 1.20415 0.95270 0.95770 0.94147 1.21823 1.01202 0.94701 1.01851 1.21808 1.01238 1.00144 0.96224 1.22732 0.99952 0.94554 0.93562 1.23951 1.01404 0.98567 0.88820 1.68866 1.31274 1.06334 1.15258 1.22628 0.91304 1.00386 0.95437 1.21156 0.97410 0.99559 0.93967 1.19499 0.95188 0.96239 0.93768 1.21509 1.02816 1.40769 0.92356 0.95567 1.26096 1.02142 0.95760 0.95478 1.70082 1.32711 1.49153 1.07432 0.85571 0.77650 0.79386 0.79497 1.18961 1.20734 1.16904 1.24129 1.00661 0.91549 0.97160 0.92940 0.91544 0.92929 0.92233 0.91836 0.93198 0.92705 0.91886 0.92248 0.88237 0.89779 0.90436 0.91002 0.93462 0.94236 0.93844 0.96204 0.96155 0.92417 0.90405 0.91136 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.40 7.41 71.98 0.53 -1.87 16 2 C -0.06 -0.85 0.71 -52.18 -0.04 -0.88 16 3 C -0.14 -1.94 8.46 71.98 0.61 -1.33 16 4 C -0.14 -1.77 8.33 71.98 0.60 -1.17 16 5 C -0.09 -1.73 3.36 -10.45 -0.04 -1.77 16 6 C 0.00 0.02 6.39 83.58 0.53 0.56 16 7 N -0.50 -14.57 6.33 -927.77 -5.88 -20.44 16 8 C 0.03 1.02 4.82 86.30 0.42 1.44 16 9 C -0.08 -3.53 5.48 30.60 0.17 -3.36 16 10 C -0.01 -0.44 4.04 29.85 0.12 -0.32 16 11 C -0.54 -32.56 9.66 25.60 0.25 -32.31 16 12 H 0.03 1.76 7.99 -2.91 -0.02 1.73 16 13 C 0.00 0.10 5.47 84.66 0.46 0.56 16 14 N -0.95 -61.60 13.96 21.45 0.30 -61.30 16 15 Si 0.96 45.21 27.47 68.60 1.88 47.09 16 16 H -0.26 -11.95 7.11 99.48 0.71 -11.24 16 17 H -0.28 -12.95 7.11 99.48 0.71 -12.25 16 18 H -0.25 -10.71 6.54 99.48 0.65 -10.06 16 19 C -0.01 -0.16 7.01 83.58 0.59 0.43 16 20 H 0.05 0.92 6.52 -2.39 -0.02 0.90 16 21 H 0.07 0.91 8.14 -2.38 -0.02 0.89 16 22 H 0.05 0.89 6.04 -2.39 -0.01 0.88 16 23 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 24 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 25 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 26 H 0.05 0.73 7.64 -2.39 -0.02 0.71 16 27 H 0.06 0.71 8.14 -2.38 -0.02 0.69 16 28 H 0.06 0.72 8.14 -2.39 -0.02 0.71 16 29 H 0.10 1.93 8.14 -2.39 -0.02 1.91 16 30 H 0.08 1.77 8.14 -2.39 -0.02 1.75 16 31 H 0.08 1.60 5.83 -2.39 -0.01 1.58 16 32 H 0.07 2.28 8.08 -2.39 -0.02 2.26 16 33 H 0.05 1.48 7.30 -2.39 -0.02 1.46 16 34 H 0.04 1.74 8.14 -2.39 -0.02 1.72 16 35 H 0.04 1.95 8.14 -2.39 -0.02 1.93 16 36 H 0.02 0.93 7.57 -2.39 -0.02 0.91 16 37 H 0.02 0.96 7.20 -2.39 -0.02 0.94 16 38 H 0.27 15.97 8.31 -92.71 -0.77 15.20 16 39 H 0.08 1.90 4.95 -2.39 -0.01 1.89 16 40 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 Total: -1.00 -67.48 306.63 1.42 -66.06 By element: Atomic # 1 Polarization: 7.70 SS G_CDS: 0.91 Total: 8.62 kcal Atomic # 6 Polarization: -44.23 SS G_CDS: 4.20 Total: -40.03 kcal Atomic # 7 Polarization: -76.17 SS G_CDS: -5.58 Total: -81.74 kcal Atomic # 14 Polarization: 45.21 SS G_CDS: 1.88 Total: 47.09 kcal Total: -67.48 1.42 -66.06 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000086681659.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.861 kcal (2) G-P(sol) polarization free energy of solvation -67.485 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.624 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.424 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.061 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.199 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds