Wall clock time and date at job start Mon Mar 30 2020 03:54:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52997 * 109.47011 * 2 1 4 4 C 1.53001 * 109.47273 * 240.00532 * 2 1 3 5 5 C 1.52996 * 109.47429 * 120.00230 * 2 1 3 6 6 H 1.09003 * 109.45698 * 160.25967 * 5 2 1 7 7 C 1.53029 * 109.46403 * 280.23815 * 5 2 1 8 8 C 1.53125 * 109.28285 * 179.19433 * 7 5 2 9 9 C 1.53119 * 109.15464 * 302.34484 * 8 7 5 10 10 C 1.53035 * 109.28429 * 57.65329 * 9 8 7 11 11 N 1.46844 * 109.52019 * 300.82056 * 10 9 8 12 12 C 1.46899 * 111.00039 * 185.83570 * 11 10 9 13 13 C 1.50700 * 109.47073 * 61.50341 * 12 11 10 14 14 H 1.08002 * 119.99766 * 359.97438 * 13 12 11 15 15 C 1.37884 * 120.00303 * 179.97438 * 13 12 11 16 16 N 1.31518 * 119.99627 * 0.02562 * 15 13 12 17 17 Si 1.86797 * 120.00213 * 179.97438 * 15 13 12 18 18 H 1.48497 * 109.47086 * 180.02562 * 17 15 13 19 19 H 1.48504 * 109.46973 * 60.00428 * 17 15 13 20 20 H 1.48494 * 109.47414 * 300.00390 * 17 15 13 21 21 H 1.08998 * 109.47053 * 299.99642 * 1 2 3 22 22 H 1.09004 * 109.46880 * 59.99999 * 1 2 3 23 23 H 1.09005 * 109.46709 * 179.97438 * 1 2 3 24 24 H 1.09009 * 109.47353 * 179.97438 * 3 2 1 25 25 H 1.09000 * 109.47517 * 300.00208 * 3 2 1 26 26 H 1.09008 * 109.46884 * 60.00279 * 3 2 1 27 27 H 1.09004 * 109.46824 * 342.33148 * 4 2 1 28 28 H 1.08997 * 109.47422 * 102.32444 * 4 2 1 29 29 H 1.09000 * 109.46990 * 222.33187 * 4 2 1 30 30 H 1.09000 * 109.50830 * 59.25144 * 7 5 2 31 31 H 1.09005 * 109.53772 * 299.14911 * 7 5 2 32 32 H 1.08999 * 109.52318 * 182.43935 * 8 7 5 33 33 H 1.08996 * 109.52208 * 62.24492 * 8 7 5 34 34 H 1.09004 * 109.50494 * 297.70811 * 9 8 7 35 35 H 1.09002 * 109.50039 * 177.59517 * 9 8 7 36 36 H 1.08998 * 109.46583 * 180.80335 * 10 9 8 37 37 H 1.09006 * 109.46197 * 60.82958 * 10 9 8 38 38 H 1.08996 * 109.47674 * 301.50153 * 12 11 10 39 39 H 1.09009 * 109.47343 * 181.50031 * 12 11 10 40 40 H 0.96994 * 120.00216 * 359.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7211 -1.2493 5 6 2.0401 -0.7213 1.2492 6 1 3.0732 -1.0318 1.0927 7 6 1.9683 0.2252 2.4495 8 6 2.4607 -0.5070 3.7010 9 6 1.6078 -1.7600 3.9182 10 6 1.6900 -2.6490 2.6753 11 7 1.2075 -1.9034 1.5059 12 6 1.1416 -2.7684 0.3204 13 6 0.1708 -3.8931 0.5725 14 1 -0.3454 -3.9589 1.5189 15 6 -0.0586 -4.8381 -0.4050 16 7 0.5704 -4.7581 -1.5573 17 14 -1.2615 -6.2325 -0.0922 18 1 -1.3281 -7.1069 -1.2906 19 1 -2.6078 -5.6716 0.1873 20 1 -0.8045 -7.0280 1.0755 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 3.1301 1.4425 0.0005 25 1 1.6767 1.9564 -0.8899 26 1 1.6767 1.9563 0.8901 27 1 1.2380 -1.3257 -1.6727 28 1 2.3680 0.0136 -1.9846 29 1 2.8775 -1.3651 -0.9806 30 1 0.9376 0.5470 2.5982 31 1 2.5984 1.0955 2.2657 32 1 2.3706 0.1496 4.5663 33 1 3.5035 -0.7948 3.5679 34 1 0.5713 -1.4694 4.0899 35 1 1.9806 -2.3084 4.7832 36 1 1.0723 -3.5352 2.8211 37 1 2.7247 -2.9504 2.5121 38 1 2.1298 -3.1804 0.1159 39 1 0.8068 -2.1847 -0.5372 40 1 1.1953 -4.0343 -1.7196 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000108304297.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:54:37 Heat of formation + Delta-G solvation = -9.735034 kcal Electronic energy + Delta-G solvation = -17258.921097 eV Core-core repulsion = 14880.074320 eV Total energy + Delta-G solvation = -2378.846776 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.55748 -35.42135 -33.91852 -31.77586 -29.35899 -27.30351 -26.67275 -26.29766 -23.49568 -22.51998 -21.23947 -19.46679 -18.06047 -16.70727 -15.27146 -14.86675 -14.02274 -13.95940 -13.74616 -13.68475 -13.25526 -13.07926 -12.54335 -12.38698 -11.75590 -11.60132 -11.47966 -11.39579 -11.04333 -10.87435 -10.71141 -10.65535 -10.53699 -10.35952 -10.06972 -10.01968 -9.82810 -9.69325 -9.30747 -8.51256 -8.22832 -7.16940 -6.31141 -3.98436 3.46481 3.48415 3.66844 4.55590 4.81052 5.12274 5.15927 5.33683 5.39273 5.44337 5.51021 5.57560 5.80003 5.90041 5.95036 6.05485 6.06248 6.07815 6.19275 6.21795 6.27099 6.32522 6.35309 6.41697 6.48226 6.57388 6.60050 6.76261 6.78011 6.82909 6.93130 7.08603 7.26085 7.37744 7.93091 8.14364 8.45960 8.66541 8.94649 9.70953 11.08029 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.027519 B = 0.009982 C = 0.008019 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1017.246857 B = 2804.260426 C = 3490.943736 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.060 4.060 3 C -0.138 4.138 4 C -0.146 4.146 5 C 0.094 3.906 6 H 0.024 0.976 7 C -0.111 4.111 8 C -0.119 4.119 9 C -0.117 4.117 10 C 0.065 3.935 11 N -0.520 5.520 12 C 0.161 3.839 13 C -0.588 4.588 14 H 0.054 0.946 15 C 0.014 3.986 16 N -0.916 5.916 17 Si 1.069 2.931 18 H -0.284 1.284 19 H -0.288 1.288 20 H -0.290 1.290 21 H 0.046 0.954 22 H 0.035 0.965 23 H 0.089 0.911 24 H 0.047 0.953 25 H 0.049 0.951 26 H 0.056 0.944 27 H 0.072 0.928 28 H 0.042 0.958 29 H 0.050 0.950 30 H 0.068 0.932 31 H 0.060 0.940 32 H 0.054 0.946 33 H 0.052 0.948 34 H 0.066 0.934 35 H 0.054 0.946 36 H 0.084 0.916 37 H 0.013 0.987 38 H -0.028 1.028 39 H 0.057 0.943 40 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.891 9.838 6.085 11.924 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.060 4.060 3 C -0.196 4.196 4 C -0.203 4.203 5 C -0.015 4.015 6 H 0.042 0.958 7 C -0.149 4.149 8 C -0.157 4.157 9 C -0.155 4.155 10 C -0.064 4.064 11 N -0.244 5.244 12 C 0.036 3.964 13 C -0.626 4.626 14 H 0.073 0.927 15 C -0.190 4.190 16 N -0.553 5.553 17 Si 0.897 3.103 18 H -0.209 1.209 19 H -0.214 1.214 20 H -0.217 1.217 21 H 0.065 0.935 22 H 0.054 0.946 23 H 0.107 0.893 24 H 0.066 0.934 25 H 0.069 0.931 26 H 0.075 0.925 27 H 0.091 0.909 28 H 0.061 0.939 29 H 0.069 0.931 30 H 0.086 0.914 31 H 0.078 0.922 32 H 0.072 0.928 33 H 0.070 0.930 34 H 0.084 0.916 35 H 0.073 0.927 36 H 0.102 0.898 37 H 0.032 0.968 38 H -0.011 1.011 39 H 0.074 0.926 40 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 1.738 8.637 5.500 10.385 hybrid contribution 1.666 1.023 0.570 2.037 sum 3.405 9.660 6.070 11.906 Atomic orbital electron populations 1.21934 0.93605 1.04321 0.99347 1.20496 0.96941 0.94093 0.94492 1.22006 1.00226 0.96087 1.01256 1.22304 1.01643 0.99609 0.96762 1.21657 0.94113 0.92209 0.93523 0.95799 1.21741 1.01440 0.97402 0.94323 1.21582 0.99136 0.97304 0.97663 1.21625 1.00244 0.96072 0.97525 1.21936 0.97486 0.96803 0.90134 1.62008 1.49099 1.07418 1.05903 1.20454 0.94815 0.91898 0.89253 1.22052 1.26500 1.10835 1.03245 0.92743 1.25765 0.99545 1.00563 0.93093 1.70795 1.26746 1.33896 1.23840 0.83538 0.75543 0.75615 0.75560 1.20934 1.21442 1.21656 0.93535 0.94606 0.89260 0.93359 0.93147 0.92481 0.90910 0.93882 0.93060 0.91365 0.92191 0.92757 0.92970 0.91570 0.92712 0.89772 0.96840 1.01073 0.92578 0.92333 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.44 7.63 37.16 0.28 -2.15 16 2 C -0.06 -1.02 0.57 -154.51 -0.09 -1.11 16 3 C -0.14 -1.91 7.19 37.16 0.27 -1.64 16 4 C -0.15 -2.66 7.79 37.16 0.29 -2.38 16 5 C 0.09 1.72 1.48 -67.72 -0.10 1.62 16 6 H 0.02 0.47 7.59 -51.93 -0.39 0.08 16 7 C -0.11 -1.70 4.24 -26.65 -0.11 -1.81 16 8 C -0.12 -1.73 6.00 -26.61 -0.16 -1.89 16 9 C -0.12 -1.89 6.09 -26.65 -0.16 -2.05 16 10 C 0.06 1.31 5.27 -3.84 -0.02 1.29 16 11 N -0.52 -11.13 3.59 -228.12 -0.82 -11.95 16 12 C 0.16 4.05 1.99 -4.98 -0.01 4.04 16 13 C -0.59 -16.47 8.41 -34.44 -0.29 -16.76 16 14 H 0.05 1.54 6.81 -52.49 -0.36 1.18 16 15 C 0.01 0.39 5.46 -17.82 -0.10 0.29 16 16 N -0.92 -27.71 13.65 55.43 0.76 -26.95 16 17 Si 1.07 25.44 29.90 -169.99 -5.08 20.36 16 18 H -0.28 -6.79 7.11 56.52 0.40 -6.38 16 19 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 20 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 21 H 0.05 0.79 7.24 -51.93 -0.38 0.41 16 22 H 0.03 0.59 8.14 -51.93 -0.42 0.16 16 23 H 0.09 1.95 5.32 -51.93 -0.28 1.67 16 24 H 0.05 0.63 8.14 -51.92 -0.42 0.21 16 25 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 26 H 0.06 0.73 6.39 -51.92 -0.33 0.40 16 27 H 0.07 1.50 5.81 -51.93 -0.30 1.20 16 28 H 0.04 0.67 7.68 -51.93 -0.40 0.28 16 29 H 0.05 0.99 6.75 -51.93 -0.35 0.64 16 30 H 0.07 1.07 7.23 -51.93 -0.38 0.70 16 31 H 0.06 0.81 6.44 -51.93 -0.33 0.47 16 32 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 33 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 34 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 35 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16 36 H 0.08 1.87 6.39 -51.93 -0.33 1.54 16 37 H 0.01 0.28 8.14 -51.93 -0.42 -0.14 16 38 H -0.03 -0.79 7.74 -51.93 -0.40 -1.19 16 39 H 0.06 1.43 2.54 -51.92 -0.13 1.29 16 40 H 0.27 8.01 7.22 -40.82 -0.29 7.72 16 LS Contribution 286.88 15.07 4.32 4.32 Total: -1.00 -29.24 286.88 -7.86 -37.09 By element: Atomic # 1 Polarization: 6.52 SS G_CDS: -6.83 Total: -0.32 kcal Atomic # 6 Polarization: -22.35 SS G_CDS: -0.20 Total: -22.55 kcal Atomic # 7 Polarization: -38.84 SS G_CDS: -0.06 Total: -38.90 kcal Atomic # 14 Polarization: 25.44 SS G_CDS: -5.08 Total: 20.36 kcal Total LS contribution 4.32 Total: 4.32 kcal Total: -29.24 -7.86 -37.09 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000108304297.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.357 kcal (2) G-P(sol) polarization free energy of solvation -29.236 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.878 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.857 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.092 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.735 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds