Wall clock time and date at job start Mon Mar 30 2020 03:54:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52997 * 109.47011 * 2 1 4 4 C 1.53001 * 109.47273 * 240.00532 * 2 1 3 5 5 C 1.52996 * 109.47429 * 120.00230 * 2 1 3 6 6 H 1.09003 * 109.45698 * 160.25967 * 5 2 1 7 7 C 1.53029 * 109.46403 * 280.23815 * 5 2 1 8 8 C 1.53125 * 109.28285 * 179.19433 * 7 5 2 9 9 C 1.53119 * 109.15464 * 302.34484 * 8 7 5 10 10 C 1.53035 * 109.28429 * 57.65329 * 9 8 7 11 11 N 1.46844 * 109.52019 * 300.82056 * 10 9 8 12 12 C 1.46899 * 111.00039 * 185.83570 * 11 10 9 13 13 C 1.50700 * 109.47073 * 61.50341 * 12 11 10 14 14 H 1.08002 * 119.99766 * 359.97438 * 13 12 11 15 15 C 1.37884 * 120.00303 * 179.97438 * 13 12 11 16 16 N 1.31518 * 119.99627 * 0.02562 * 15 13 12 17 17 Si 1.86797 * 120.00213 * 179.97438 * 15 13 12 18 18 H 1.48497 * 109.47086 * 180.02562 * 17 15 13 19 19 H 1.48504 * 109.46973 * 60.00428 * 17 15 13 20 20 H 1.48494 * 109.47414 * 300.00390 * 17 15 13 21 21 H 1.08998 * 109.47053 * 299.99642 * 1 2 3 22 22 H 1.09004 * 109.46880 * 59.99999 * 1 2 3 23 23 H 1.09005 * 109.46709 * 179.97438 * 1 2 3 24 24 H 1.09009 * 109.47353 * 179.97438 * 3 2 1 25 25 H 1.09000 * 109.47517 * 300.00208 * 3 2 1 26 26 H 1.09008 * 109.46884 * 60.00279 * 3 2 1 27 27 H 1.09004 * 109.46824 * 342.33148 * 4 2 1 28 28 H 1.08997 * 109.47422 * 102.32444 * 4 2 1 29 29 H 1.09000 * 109.46990 * 222.33187 * 4 2 1 30 30 H 1.09000 * 109.50830 * 59.25144 * 7 5 2 31 31 H 1.09005 * 109.53772 * 299.14911 * 7 5 2 32 32 H 1.08999 * 109.52318 * 182.43935 * 8 7 5 33 33 H 1.08996 * 109.52208 * 62.24492 * 8 7 5 34 34 H 1.09004 * 109.50494 * 297.70811 * 9 8 7 35 35 H 1.09002 * 109.50039 * 177.59517 * 9 8 7 36 36 H 1.08998 * 109.46583 * 180.80335 * 10 9 8 37 37 H 1.09006 * 109.46197 * 60.82958 * 10 9 8 38 38 H 1.08996 * 109.47674 * 301.50153 * 12 11 10 39 39 H 1.09009 * 109.47343 * 181.50031 * 12 11 10 40 40 H 0.96994 * 120.00216 * 359.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7211 -1.2493 5 6 2.0401 -0.7213 1.2492 6 1 3.0732 -1.0318 1.0927 7 6 1.9683 0.2252 2.4495 8 6 2.4607 -0.5070 3.7010 9 6 1.6078 -1.7600 3.9182 10 6 1.6900 -2.6490 2.6753 11 7 1.2075 -1.9034 1.5059 12 6 1.1416 -2.7684 0.3204 13 6 0.1708 -3.8931 0.5725 14 1 -0.3454 -3.9589 1.5189 15 6 -0.0586 -4.8381 -0.4050 16 7 0.5704 -4.7581 -1.5573 17 14 -1.2615 -6.2325 -0.0922 18 1 -1.3281 -7.1069 -1.2906 19 1 -2.6078 -5.6716 0.1873 20 1 -0.8045 -7.0280 1.0755 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 3.1301 1.4425 0.0005 25 1 1.6767 1.9564 -0.8899 26 1 1.6767 1.9563 0.8901 27 1 1.2380 -1.3257 -1.6727 28 1 2.3680 0.0136 -1.9846 29 1 2.8775 -1.3651 -0.9806 30 1 0.9376 0.5470 2.5982 31 1 2.5984 1.0955 2.2657 32 1 2.3706 0.1496 4.5663 33 1 3.5035 -0.7948 3.5679 34 1 0.5713 -1.4694 4.0899 35 1 1.9806 -2.3084 4.7832 36 1 1.0723 -3.5352 2.8211 37 1 2.7247 -2.9504 2.5121 38 1 2.1298 -3.1804 0.1159 39 1 0.8068 -2.1847 -0.5372 40 1 1.1953 -4.0343 -1.7196 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000108304297.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:54:37 Heat of formation + Delta-G solvation = -27.066042 kcal Electronic energy + Delta-G solvation = -17259.672626 eV Core-core repulsion = 14880.074320 eV Total energy + Delta-G solvation = -2379.598305 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.06875 -36.83131 -35.83071 -33.61970 -30.78289 -28.77653 -28.18953 -28.04300 -25.32364 -23.95887 -23.01730 -20.86936 -19.51884 -18.83012 -16.85569 -16.47734 -15.63988 -15.51247 -15.33339 -15.28241 -14.78798 -14.49176 -14.09210 -13.84355 -13.45897 -13.28251 -12.97717 -12.87749 -12.64760 -12.46031 -12.40367 -12.26647 -11.95032 -11.85665 -11.69496 -11.43112 -11.36096 -11.22262 -10.78944 -10.60434 -10.33813 -8.98251 -8.63348 -6.31422 1.50864 1.59313 1.78511 2.56115 3.16598 3.24440 3.75395 3.82479 4.00903 4.05740 4.20739 4.25615 4.43203 4.46688 4.59343 4.63177 4.70590 4.82888 4.83859 4.85408 4.91224 4.98874 5.01813 5.08204 5.11742 5.14482 5.20000 5.24716 5.26902 5.33819 5.38687 5.46460 5.57729 5.73085 5.89397 6.10634 6.50857 6.52775 6.78894 7.47168 8.75480 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.027519 B = 0.009982 C = 0.008019 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1017.246857 B = 2804.260426 C = 3490.943736 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.061 4.061 3 C -0.130 4.130 4 C -0.141 4.141 5 C 0.089 3.911 6 H 0.007 0.993 7 C -0.105 4.105 8 C -0.116 4.116 9 C -0.108 4.108 10 C 0.061 3.939 11 N -0.522 5.522 12 C 0.175 3.825 13 C -0.597 4.597 14 H 0.049 0.951 15 C -0.038 4.038 16 N -0.939 5.939 17 Si 1.116 2.884 18 H -0.284 1.284 19 H -0.270 1.270 20 H -0.274 1.274 21 H 0.059 0.941 22 H 0.049 0.951 23 H 0.043 0.957 24 H 0.058 0.942 25 H 0.063 0.937 26 H 0.075 0.925 27 H 0.038 0.962 28 H 0.070 0.930 29 H 0.028 0.972 30 H 0.069 0.931 31 H 0.089 0.911 32 H 0.088 0.912 33 H 0.052 0.948 34 H 0.065 0.935 35 H 0.076 0.924 36 H 0.055 0.945 37 H -0.002 1.002 38 H -0.069 1.069 39 H 0.057 0.943 40 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.670 11.900 7.686 14.416 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.062 4.062 3 C -0.188 4.188 4 C -0.198 4.198 5 C -0.020 4.020 6 H 0.025 0.975 7 C -0.143 4.143 8 C -0.154 4.154 9 C -0.146 4.146 10 C -0.067 4.067 11 N -0.246 5.246 12 C 0.049 3.951 13 C -0.636 4.636 14 H 0.067 0.933 15 C -0.235 4.235 16 N -0.577 5.577 17 Si 0.938 3.062 18 H -0.209 1.209 19 H -0.195 1.195 20 H -0.199 1.199 21 H 0.078 0.922 22 H 0.068 0.932 23 H 0.062 0.938 24 H 0.077 0.923 25 H 0.082 0.918 26 H 0.093 0.907 27 H 0.057 0.943 28 H 0.089 0.911 29 H 0.048 0.952 30 H 0.088 0.912 31 H 0.107 0.893 32 H 0.106 0.894 33 H 0.071 0.929 34 H 0.084 0.916 35 H 0.094 0.906 36 H 0.073 0.927 37 H 0.017 0.983 38 H -0.051 1.051 39 H 0.074 0.926 40 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 1.528 10.727 7.124 12.967 hybrid contribution 1.771 0.389 0.064 1.814 sum 3.299 11.116 7.188 13.642 Atomic orbital electron populations 1.21807 0.94261 1.01675 1.00690 1.20562 0.96320 0.96290 0.92991 1.21940 1.00872 0.93102 1.02870 1.22228 0.99620 0.99641 0.98291 1.21852 0.92511 0.91547 0.96085 0.97517 1.21745 1.02299 0.97382 0.92856 1.21597 0.98535 0.96675 0.98581 1.21570 1.00956 0.96428 0.95620 1.21976 0.95727 0.97079 0.91904 1.62014 1.50385 1.07636 1.04569 1.20190 0.91842 0.91851 0.91202 1.22388 1.26565 1.11765 1.02849 0.93323 1.27267 1.00630 1.03079 0.92541 1.70918 1.27798 1.33997 1.25023 0.82940 0.74301 0.73052 0.75927 1.20942 1.19500 1.19900 0.92159 0.93218 0.93787 0.92320 0.91830 0.90660 0.94285 0.91085 0.95239 0.91187 0.89255 0.89372 0.92925 0.91599 0.90591 0.92684 0.98345 1.05135 0.92557 0.93769 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.50 7.63 71.98 0.55 -3.95 16 2 C -0.06 -2.03 0.57 -52.18 -0.03 -2.06 16 3 C -0.13 -3.14 7.19 71.98 0.52 -2.62 16 4 C -0.14 -5.26 7.79 71.98 0.56 -4.69 16 5 C 0.09 3.19 1.48 44.93 0.07 3.26 16 6 H 0.01 0.27 7.59 -2.39 -0.02 0.25 16 7 C -0.11 -2.87 4.24 30.65 0.13 -2.74 16 8 C -0.12 -2.98 6.00 30.68 0.18 -2.80 16 9 C -0.11 -3.30 6.09 30.65 0.19 -3.11 16 10 C 0.06 2.55 5.27 86.33 0.45 3.00 16 11 N -0.52 -22.94 3.59 -875.65 -3.14 -26.08 16 12 C 0.18 9.36 1.99 85.56 0.17 9.53 16 13 C -0.60 -34.90 8.41 25.60 0.22 -34.69 16 14 H 0.05 2.84 6.81 -2.91 -0.02 2.82 16 15 C -0.04 -2.25 5.46 84.66 0.46 -1.79 16 16 N -0.94 -59.14 13.65 21.45 0.29 -58.85 16 17 Si 1.12 51.86 29.90 68.60 2.05 53.91 16 18 H -0.28 -13.15 7.11 99.48 0.71 -12.44 16 19 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 20 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 21 H 0.06 1.93 7.24 -2.39 -0.02 1.91 16 22 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 23 H 0.04 1.96 5.32 -2.38 -0.01 1.95 16 24 H 0.06 1.31 8.14 -2.38 -0.02 1.29 16 25 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 26 H 0.07 1.57 6.39 -2.38 -0.02 1.55 16 27 H 0.04 1.70 5.81 -2.38 -0.01 1.68 16 28 H 0.07 2.19 7.68 -2.39 -0.02 2.17 16 29 H 0.03 1.19 6.75 -2.39 -0.02 1.17 16 30 H 0.07 1.93 7.23 -2.39 -0.02 1.91 16 31 H 0.09 1.97 6.44 -2.38 -0.02 1.95 16 32 H 0.09 1.75 8.14 -2.39 -0.02 1.74 16 33 H 0.05 1.36 8.14 -2.39 -0.02 1.34 16 34 H 0.07 2.03 8.14 -2.38 -0.02 2.01 16 35 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 36 H 0.05 2.55 6.39 -2.39 -0.02 2.53 16 37 H 0.00 -0.07 8.14 -2.38 -0.02 -0.09 16 38 H -0.07 -4.14 7.74 -2.39 -0.02 -4.16 16 39 H 0.06 3.05 2.54 -2.38 -0.01 3.04 16 40 H 0.25 16.17 7.22 -92.71 -0.67 15.50 16 Total: -1.00 -66.56 286.88 3.76 -62.80 By element: Atomic # 1 Polarization: 9.80 SS G_CDS: 1.09 Total: 10.89 kcal Atomic # 6 Polarization: -46.14 SS G_CDS: 3.47 Total: -42.67 kcal Atomic # 7 Polarization: -82.08 SS G_CDS: -2.85 Total: -84.93 kcal Atomic # 14 Polarization: 51.86 SS G_CDS: 2.05 Total: 53.91 kcal Total: -66.56 3.76 -62.80 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000108304297.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.729 kcal (2) G-P(sol) polarization free energy of solvation -66.558 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.829 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.763 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.795 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.066 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds