Wall clock time and date at job start Mon Mar 30 2020 03:54:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52997 * 109.46883 * 2 1 4 4 C 1.52999 * 109.47019 * 119.99783 * 2 1 3 5 5 C 1.52997 * 109.47328 * 239.99946 * 2 1 3 6 6 H 1.08998 * 109.61421 * 174.34121 * 5 2 1 7 7 C 1.53295 * 109.61176 * 294.85603 * 5 2 1 8 8 C 1.52676 * 109.62177 * 197.74268 * 7 5 2 9 9 C 1.52428 * 110.57326 * 264.39909 * 8 7 5 10 10 C 1.52137 * 111.20487 * 63.50883 * 9 8 7 11 11 C 1.52737 * 110.65877 * 296.88986 * 10 9 8 12 12 N 1.46585 * 109.32912 * 91.88685 * 11 10 9 13 13 C 1.36945 * 120.47639 * 103.19007 * 12 11 10 14 14 H 1.07992 * 119.99858 * 44.97646 * 13 12 11 15 15 C 1.38814 * 119.99864 * 224.97752 * 13 12 11 16 16 N 1.31625 * 119.99908 * 10.30980 * 15 13 12 17 17 Si 1.86802 * 119.99871 * 190.30725 * 15 13 12 18 18 H 1.48499 * 109.46876 * 90.00462 * 17 15 13 19 19 H 1.48497 * 109.46793 * 210.00192 * 17 15 13 20 20 H 1.48499 * 109.47055 * 330.00101 * 17 15 13 21 21 H 1.09003 * 109.47196 * 60.00793 * 1 2 3 22 22 H 1.08994 * 109.47418 * 300.00481 * 1 2 3 23 23 H 1.09004 * 109.46985 * 180.02562 * 1 2 3 24 24 H 1.09000 * 109.47568 * 69.38269 * 3 2 1 25 25 H 1.09002 * 109.47040 * 189.38377 * 3 2 1 26 26 H 1.09000 * 109.47454 * 309.38145 * 3 2 1 27 27 H 1.08996 * 109.47431 * 60.00355 * 4 2 1 28 28 H 1.08997 * 109.46892 * 180.02562 * 4 2 1 29 29 H 1.09005 * 109.47251 * 300.00128 * 4 2 1 30 30 H 1.09000 * 109.44688 * 317.79205 * 7 5 2 31 31 H 1.09005 * 109.44871 * 77.69350 * 7 5 2 32 32 H 1.09000 * 109.25894 * 144.11269 * 8 7 5 33 33 H 1.09007 * 109.22491 * 24.66179 * 8 7 5 34 34 H 1.09002 * 109.13194 * 303.06797 * 9 8 7 35 35 H 1.08997 * 109.13740 * 183.95640 * 9 8 7 36 36 H 1.08996 * 109.24040 * 176.58679 * 10 9 8 37 37 H 1.09000 * 109.23904 * 57.19292 * 10 9 8 38 38 H 1.08998 * 109.49147 * 331.93284 * 11 10 9 39 39 H 1.08997 * 109.49266 * 211.84512 * 11 10 9 40 40 H 0.96999 * 119.99645 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 2.0400 -0.7212 -1.2492 6 1 3.1253 -0.6357 -1.3036 7 6 1.6393 -2.1997 -1.1894 8 6 2.4925 -3.0021 -2.1687 9 6 1.7617 -3.1802 -3.4945 10 6 1.5247 -1.8411 -4.1764 11 6 0.6157 -0.9565 -3.3254 12 7 1.4377 -0.1202 -2.4458 13 6 1.6405 1.2028 -2.7357 14 1 0.8104 1.8217 -3.0423 15 6 2.9131 1.7481 -2.6354 16 7 3.9542 0.9617 -2.4619 17 14 3.1480 3.5979 -2.7467 18 1 3.0568 4.1910 -1.3883 19 1 4.4824 3.8933 -3.3272 20 1 2.0914 4.1798 -3.6129 21 1 -0.3634 0.5137 -0.8901 22 1 -0.3634 0.5139 0.8899 23 1 -0.3633 -1.0277 0.0005 24 1 1.8199 1.9057 0.9618 25 1 3.1170 1.4471 -0.1676 26 1 1.5463 2.0024 -0.7943 27 1 1.6767 -1.7488 1.2493 28 1 3.1299 -0.7208 1.2495 29 1 1.6766 -0.2073 2.1393 30 1 1.7948 -2.5772 -0.1788 31 1 0.5874 -2.3017 -1.4564 32 1 2.7052 -3.9819 -1.7410 33 1 3.4304 -2.4749 -2.3432 34 1 0.8016 -3.6627 -3.3112 35 1 2.3594 -3.8139 -4.1497 36 1 1.0563 -2.0097 -5.1460 37 1 2.4807 -1.3382 -4.3226 38 1 -0.0407 -1.5835 -2.7221 39 1 0.0152 -0.3202 -3.9755 40 1 4.8434 1.3428 -2.3914 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000108304319.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:54:30 Heat of formation + Delta-G solvation = -4.429950 kcal Electronic energy + Delta-G solvation = -17816.064882 eV Core-core repulsion = 15437.448152 eV Total energy + Delta-G solvation = -2378.616731 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.35353 -36.82706 -35.10896 -32.71570 -31.63572 -28.58997 -27.83327 -27.11691 -25.53432 -24.70199 -21.22879 -21.03860 -19.59928 -17.97787 -16.74224 -16.32531 -16.13243 -15.48170 -14.90395 -14.48408 -14.43122 -14.14885 -13.90800 -13.58126 -13.29119 -12.97685 -12.69626 -12.68376 -12.50728 -12.24623 -12.17460 -12.11687 -11.75826 -11.68236 -11.42901 -11.38785 -11.18389 -10.90045 -10.84671 -10.52612 -10.20472 -8.24893 -7.51096 -5.31720 1.43156 1.47538 1.50883 2.54819 3.42472 3.81022 4.10123 4.23334 4.28370 4.35103 4.40923 4.52450 4.67440 4.76857 4.90243 4.94715 4.96411 5.04381 5.07114 5.09979 5.13033 5.23740 5.24105 5.32153 5.38948 5.42406 5.43712 5.53855 5.61438 5.62819 5.74353 5.78676 5.81842 5.91246 6.08742 6.26816 6.66212 7.39975 8.07271 8.65265 9.28617 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.023809 B = 0.014323 C = 0.010961 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1175.755616 B = 1954.421614 C = 2553.860679 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.075 4.075 3 C -0.127 4.127 4 C -0.133 4.133 5 C 0.189 3.811 6 H 0.044 0.956 7 C -0.130 4.130 8 C -0.110 4.110 9 C -0.102 4.102 10 C -0.133 4.133 11 C 0.142 3.858 12 N -0.587 5.587 13 C -0.249 4.249 14 H 0.042 0.958 15 C -0.002 4.002 16 N -0.905 5.905 17 Si 0.921 3.079 18 H -0.282 1.282 19 H -0.299 1.299 20 H -0.274 1.274 21 H 0.041 0.959 22 H 0.042 0.958 23 H 0.053 0.947 24 H 0.022 0.978 25 H 0.027 0.973 26 H 0.065 0.935 27 H 0.068 0.932 28 H 0.035 0.965 29 H 0.053 0.947 30 H 0.073 0.927 31 H 0.070 0.930 32 H 0.067 0.933 33 H 0.031 0.969 34 H 0.070 0.930 35 H 0.055 0.945 36 H 0.054 0.946 37 H 0.028 0.972 38 H 0.053 0.947 39 H 0.035 0.965 40 H 0.243 0.757 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.484 -6.750 3.611 9.417 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.076 4.076 3 C -0.184 4.184 4 C -0.190 4.190 5 C 0.084 3.916 6 H 0.061 0.939 7 C -0.167 4.167 8 C -0.147 4.147 9 C -0.139 4.139 10 C -0.173 4.173 11 C 0.017 3.983 12 N -0.309 5.309 13 C -0.380 4.380 14 H 0.059 0.941 15 C -0.201 4.201 16 N -0.549 5.549 17 Si 0.750 3.250 18 H -0.209 1.209 19 H -0.226 1.226 20 H -0.199 1.199 21 H 0.060 0.940 22 H 0.061 0.939 23 H 0.072 0.928 24 H 0.041 0.959 25 H 0.046 0.954 26 H 0.084 0.916 27 H 0.087 0.913 28 H 0.054 0.946 29 H 0.072 0.928 30 H 0.091 0.909 31 H 0.089 0.911 32 H 0.086 0.914 33 H 0.049 0.951 34 H 0.089 0.911 35 H 0.073 0.927 36 H 0.073 0.927 37 H 0.047 0.953 38 H 0.071 0.929 39 H 0.053 0.947 40 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -5.322 -6.717 3.604 9.297 hybrid contribution 0.815 1.493 -0.317 1.730 sum -4.506 -5.224 3.287 7.642 Atomic orbital electron populations 1.21586 0.94892 1.00575 1.00068 1.20845 0.95617 0.95332 0.95844 1.22001 1.00147 0.97482 0.98803 1.21897 0.99864 1.00492 0.96769 1.20661 0.97219 0.89331 0.84417 0.93871 1.22101 1.00059 0.95443 0.99103 1.21337 0.98391 0.99110 0.95880 1.21198 1.00285 0.96303 0.96144 1.21940 1.00055 0.96673 0.98656 1.21032 0.92748 0.92626 0.91898 1.43985 1.58297 1.06143 1.22521 1.18798 0.90717 0.86588 1.41874 0.94069 1.25719 0.95666 0.99022 0.99682 1.70030 0.97698 1.33831 1.53308 0.86048 0.76630 0.84424 0.77874 1.20868 1.22606 1.19904 0.94015 0.93885 0.92837 0.95910 0.95426 0.91631 0.91301 0.94569 0.92792 0.90908 0.91146 0.91438 0.95054 0.91122 0.92666 0.92745 0.95314 0.92876 0.94691 0.94679 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.06 8.03 71.98 0.58 -3.48 16 2 C -0.07 -2.96 0.58 -52.18 -0.03 -3.00 16 3 C -0.13 -5.73 6.65 71.98 0.48 -5.25 16 4 C -0.13 -4.44 8.04 71.98 0.58 -3.86 16 5 C 0.19 8.23 1.46 45.03 0.07 8.30 16 6 H 0.04 2.30 5.52 -2.39 -0.01 2.29 16 7 C -0.13 -4.57 4.10 30.59 0.13 -4.45 16 8 C -0.11 -3.80 5.69 30.30 0.17 -3.63 16 9 C -0.10 -3.27 5.49 30.12 0.17 -3.11 16 10 C -0.13 -5.13 5.77 30.22 0.17 -4.95 16 11 C 0.14 5.78 5.74 86.28 0.50 6.27 16 12 N -0.59 -27.43 1.54 -677.00 -1.04 -28.47 16 13 C -0.25 -13.04 6.64 84.03 0.56 -12.48 16 14 H 0.04 2.23 7.85 -2.91 -0.02 2.21 16 15 C 0.00 -0.12 3.00 84.86 0.25 0.14 16 16 N -0.91 -51.31 10.72 21.65 0.23 -51.08 16 17 Si 0.92 44.17 28.68 68.60 1.97 46.14 16 18 H -0.28 -13.37 7.11 99.48 0.71 -12.66 16 19 H -0.30 -14.63 7.11 99.48 0.71 -13.92 16 20 H -0.27 -12.81 7.11 99.48 0.71 -12.11 16 21 H 0.04 1.66 7.25 -2.39 -0.02 1.65 16 22 H 0.04 1.38 8.14 -2.39 -0.02 1.36 16 23 H 0.05 1.70 7.02 -2.38 -0.02 1.68 16 24 H 0.02 0.90 8.12 -2.39 -0.02 0.88 16 25 H 0.03 1.36 6.76 -2.39 -0.02 1.34 16 26 H 0.06 3.21 4.44 -2.39 -0.01 3.20 16 27 H 0.07 2.01 5.99 -2.39 -0.01 1.99 16 28 H 0.04 1.27 8.14 -2.39 -0.02 1.25 16 29 H 0.05 1.63 8.14 -2.38 -0.02 1.61 16 30 H 0.07 2.29 5.50 -2.39 -0.01 2.28 16 31 H 0.07 2.36 4.75 -2.38 -0.01 2.35 16 32 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 33 H 0.03 1.32 7.45 -2.38 -0.02 1.30 16 34 H 0.07 1.95 8.02 -2.39 -0.02 1.93 16 35 H 0.05 1.63 8.14 -2.39 -0.02 1.62 16 36 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 37 H 0.03 1.36 8.01 -2.39 -0.02 1.34 16 38 H 0.05 1.93 5.57 -2.39 -0.01 1.92 16 39 H 0.03 1.44 7.96 -2.39 -0.02 1.42 16 40 H 0.24 13.72 8.31 -92.71 -0.77 12.95 16 Total: -1.00 -57.04 280.81 5.76 -51.27 By element: Atomic # 1 Polarization: 10.66 SS G_CDS: 0.99 Total: 11.65 kcal Atomic # 6 Polarization: -33.12 SS G_CDS: 3.62 Total: -29.50 kcal Atomic # 7 Polarization: -78.74 SS G_CDS: -0.81 Total: -79.55 kcal Atomic # 14 Polarization: 44.17 SS G_CDS: 1.97 Total: 46.14 kcal Total: -57.04 5.76 -51.27 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000108304319.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.844 kcal (2) G-P(sol) polarization free energy of solvation -57.036 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.192 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.762 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.274 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.430 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds