Wall clock time and date at job start Mon Mar 30 2020 03:45:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 109.47160 * 2 1 4 4 C 1.52996 * 109.47181 * 183.04667 * 3 2 1 5 5 C 1.52998 * 109.47283 * 65.00505 * 4 3 2 6 6 C 1.53007 * 109.46878 * 63.04808 * 3 2 1 7 7 N 1.46902 * 109.47093 * 186.50587 * 6 3 2 8 8 C 1.46891 * 111.00147 * 199.88547 * 7 6 3 9 9 C 1.50699 * 109.47167 * 159.30952 * 8 7 6 10 10 H 1.07991 * 120.00061 * 354.56678 * 9 8 7 11 11 C 1.37880 * 119.99884 * 174.56340 * 9 8 7 12 12 N 1.31511 * 120.00120 * 0.02562 * 11 9 8 13 13 Si 1.86803 * 120.00014 * 180.02562 * 11 9 8 14 14 H 1.48496 * 109.47107 * 89.99892 * 13 11 9 15 15 H 1.48500 * 109.47026 * 210.00198 * 13 11 9 16 16 H 1.48504 * 109.47008 * 329.99799 * 13 11 9 17 17 C 1.46906 * 110.99793 * 75.93091 * 7 6 3 18 18 C 1.52992 * 117.50014 * 263.47080 * 17 7 6 19 19 C 1.52998 * 117.50059 * 194.81055 * 17 7 6 20 20 H 1.08995 * 109.47001 * 62.22348 * 1 2 3 21 21 H 1.08999 * 109.46829 * 182.21841 * 1 2 3 22 22 H 1.09000 * 109.46785 * 302.21895 * 1 2 3 23 23 H 1.09001 * 109.47171 * 240.00317 * 2 1 3 24 24 H 1.08994 * 109.47418 * 120.00481 * 2 1 3 25 25 H 1.08993 * 109.47438 * 303.05045 * 3 2 1 26 26 H 1.09002 * 109.47066 * 185.00025 * 4 3 2 27 27 H 1.09000 * 109.47541 * 305.00006 * 4 3 2 28 28 H 1.09002 * 109.46677 * 299.99758 * 5 4 3 29 29 H 1.08997 * 109.47399 * 59.99816 * 5 4 3 30 30 H 1.08996 * 109.47289 * 179.97438 * 5 4 3 31 31 H 1.08998 * 109.46900 * 306.50766 * 6 3 2 32 32 H 1.09001 * 109.46954 * 66.50875 * 6 3 2 33 33 H 1.09007 * 109.47287 * 279.30890 * 8 7 6 34 34 H 1.08997 * 109.47140 * 39.30732 * 8 7 6 35 35 H 0.96999 * 120.00540 * 180.02562 * 12 11 9 36 36 H 1.09006 * 115.54431 * 49.13929 * 17 7 6 37 37 H 1.09004 * 117.50050 * 0.02562 * 18 17 7 38 38 H 1.09004 * 117.50006 * 145.01779 * 18 17 7 39 39 H 1.08996 * 117.49796 * 214.98299 * 19 17 7 40 40 H 1.08996 * 117.49683 * 359.97438 * 19 17 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5681 1.4432 -0.0767 5 6 4.0117 0.8572 -1.4185 6 6 1.5936 2.1412 1.2859 7 7 1.9473 3.5654 1.2175 8 6 1.9788 4.1650 2.5581 9 6 2.8074 5.4233 2.5262 10 1 3.3365 5.6988 1.6260 11 6 2.8899 6.2230 3.6464 12 7 2.2459 5.8873 4.7428 13 14 3.9164 7.7832 3.6067 14 1 3.0715 8.9204 3.1617 15 1 4.4460 8.0619 4.9658 16 1 5.0479 7.6073 2.6611 17 6 1.0259 4.2949 0.3360 18 6 1.4665 4.5256 -1.1109 19 6 1.4446 5.6935 -0.1216 20 1 -0.3633 0.4789 -0.9092 21 1 -0.3633 -1.0269 0.0398 22 1 -0.3633 0.5479 0.8694 23 1 1.8934 -0.5138 -0.8900 24 1 1.8934 -0.5139 0.8899 25 1 1.6328 1.9719 -0.8613 26 1 3.9359 2.4653 0.0127 27 1 3.9729 0.8391 0.7353 28 1 3.6439 -0.1650 -1.5079 29 1 3.6069 1.4613 -2.2305 30 1 5.1003 0.8581 -1.4733 31 1 0.5142 2.0399 1.3985 32 1 2.0926 1.6836 2.1401 33 1 0.9632 4.4066 2.8720 34 1 2.4182 3.4583 3.2619 35 1 2.3036 6.4500 5.5308 36 1 -0.0348 4.1211 0.5175 37 1 2.4398 4.1358 -1.4089 38 1 0.6956 4.5042 -1.8813 39 1 0.6593 6.4398 -0.2415 40 1 2.4035 6.0725 0.2318 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000129113782.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:45:06 Heat of formation + Delta-G solvation = 6.244872 kcal Electronic energy + Delta-G solvation = -16463.593258 eV Core-core repulsion = 14085.439423 eV Total energy + Delta-G solvation = -2378.153836 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -38.28418 -36.09360 -33.37044 -32.06612 -31.48815 -28.14979 -26.01820 -23.32934 -22.23037 -22.17284 -21.54070 -19.76492 -19.03951 -16.47033 -15.14058 -14.74273 -14.68721 -14.26891 -14.11817 -13.76600 -13.41461 -12.91472 -12.34840 -12.26688 -11.93879 -11.72260 -11.48424 -11.25186 -11.01197 -10.97290 -10.77023 -10.76227 -10.58828 -10.15867 -10.12421 -10.00316 -9.76005 -9.42442 -9.10043 -9.00884 -8.35469 -7.17552 -5.96386 -3.96068 3.34190 3.40568 3.44256 4.45249 4.63823 4.84273 5.11985 5.19362 5.34182 5.39140 5.50534 5.59571 5.71373 5.71860 5.80319 5.89636 5.90172 6.07173 6.09982 6.15061 6.21862 6.24959 6.25896 6.30388 6.41971 6.47355 6.54953 6.62869 6.74772 6.88195 6.95579 7.05819 7.29455 7.45181 7.91674 8.19574 8.29921 8.62834 9.10765 9.66625 11.14202 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.029906 B = 0.007260 C = 0.007132 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 936.040485 B = 3855.973235 C = 3925.275670 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.120 4.120 3 C -0.080 4.080 4 C -0.112 4.112 5 C -0.150 4.150 6 C 0.061 3.939 7 N -0.508 5.508 8 C 0.196 3.804 9 C -0.495 4.495 10 H 0.066 0.934 11 C 0.053 3.947 12 N -0.902 5.902 13 Si 0.893 3.107 14 H -0.282 1.282 15 H -0.288 1.288 16 H -0.273 1.273 17 C 0.030 3.970 18 C -0.185 4.185 19 C -0.157 4.157 20 H 0.050 0.950 21 H 0.046 0.954 22 H 0.057 0.943 23 H 0.059 0.941 24 H 0.057 0.943 25 H 0.071 0.929 26 H 0.080 0.920 27 H 0.051 0.949 28 H 0.047 0.953 29 H 0.049 0.951 30 H 0.046 0.954 31 H 0.026 0.974 32 H 0.063 0.937 33 H -0.005 1.005 34 H 0.023 0.977 35 H 0.259 0.741 36 H 0.065 0.935 37 H 0.092 0.908 38 H 0.077 0.923 39 H 0.078 0.922 40 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.550 -8.486 -10.352 13.475 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.158 4.158 3 C -0.099 4.099 4 C -0.150 4.150 5 C -0.208 4.208 6 C -0.067 4.067 7 N -0.232 5.232 8 C 0.071 3.929 9 C -0.533 4.533 10 H 0.084 0.916 11 C -0.148 4.148 12 N -0.542 5.542 13 Si 0.721 3.279 14 H -0.208 1.208 15 H -0.214 1.214 16 H -0.198 1.198 17 C -0.080 4.080 18 C -0.223 4.223 19 C -0.194 4.194 20 H 0.069 0.931 21 H 0.065 0.935 22 H 0.076 0.924 23 H 0.078 0.922 24 H 0.076 0.924 25 H 0.089 0.911 26 H 0.098 0.902 27 H 0.070 0.930 28 H 0.067 0.933 29 H 0.068 0.932 30 H 0.065 0.935 31 H 0.044 0.956 32 H 0.082 0.918 33 H 0.013 0.987 34 H 0.041 0.959 35 H 0.069 0.931 36 H 0.083 0.917 37 H 0.110 0.890 38 H 0.095 0.905 39 H 0.097 0.903 40 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -1.102 -8.387 -10.341 13.360 hybrid contribution -0.398 0.810 0.562 1.063 sum -1.499 -7.578 -9.779 12.462 Atomic orbital electron populations 1.21839 0.96507 1.00788 1.01960 1.21614 0.95405 0.97387 1.01432 1.21171 0.95740 0.94153 0.98823 1.21452 0.95169 1.02347 0.96007 1.21832 1.00286 1.00342 0.98318 1.22156 0.97468 0.90122 0.96958 1.61834 1.47275 0.99882 1.14212 1.19716 0.95942 0.94527 0.82732 1.21230 1.28203 1.06025 0.97860 0.91550 1.24984 0.96108 0.98116 0.95579 1.69955 1.43192 1.38583 1.02459 0.86579 0.80568 0.83581 0.77188 1.20803 1.21406 1.19828 1.22054 0.93238 0.98873 0.93794 1.23018 1.02162 1.04895 0.92239 1.23064 1.04199 0.90631 1.01465 0.93088 0.93489 0.92366 0.92212 0.92420 0.91065 0.90156 0.92971 0.93348 0.93217 0.93485 0.95636 0.91820 0.98666 0.95900 0.93100 0.91706 0.88974 0.90487 0.90346 0.86724 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.84 9.69 37.16 0.36 -1.48 16 2 C -0.12 -1.52 5.25 -26.73 -0.14 -1.66 16 3 C -0.08 -1.19 1.92 -90.62 -0.17 -1.36 16 4 C -0.11 -1.68 5.35 -26.73 -0.14 -1.82 16 5 C -0.15 -1.86 9.67 37.16 0.36 -1.50 16 6 C 0.06 1.11 4.25 -3.82 -0.02 1.09 16 7 N -0.51 -10.76 3.93 -228.08 -0.90 -11.65 16 8 C 0.20 5.07 4.77 -4.98 -0.02 5.05 16 9 C -0.49 -13.65 7.91 -34.44 -0.27 -13.93 16 10 H 0.07 1.81 5.81 -52.49 -0.31 1.50 16 11 C 0.05 1.49 5.46 -17.82 -0.10 1.39 16 12 N -0.90 -26.90 13.29 55.43 0.74 -26.16 16 13 Si 0.89 21.68 29.54 -169.99 -5.02 16.66 16 14 H -0.28 -6.76 7.11 56.52 0.40 -6.35 16 15 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 16 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 17 C 0.03 0.58 4.45 -67.71 -0.30 0.28 16 18 C -0.19 -3.09 9.22 -26.70 -0.25 -3.33 16 19 C -0.16 -3.01 9.50 -26.70 -0.25 -3.26 16 20 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 21 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 22 H 0.06 0.75 6.27 -51.93 -0.33 0.43 16 23 H 0.06 0.69 6.43 -51.93 -0.33 0.35 16 24 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 25 H 0.07 1.10 6.52 -51.93 -0.34 0.76 16 26 H 0.08 1.41 7.67 -51.93 -0.40 1.01 16 27 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 28 H 0.05 0.54 6.50 -51.93 -0.34 0.20 16 29 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.03 0.46 5.98 -51.93 -0.31 0.15 16 32 H 0.06 1.20 7.58 -51.93 -0.39 0.81 16 33 H 0.00 -0.13 7.99 -51.92 -0.41 -0.54 16 34 H 0.02 0.63 7.58 -51.93 -0.39 0.24 16 35 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 36 H 0.07 1.27 8.09 -51.93 -0.42 0.85 16 37 H 0.09 1.55 8.14 -51.93 -0.42 1.13 16 38 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 39 H 0.08 1.39 8.14 -51.93 -0.42 0.97 16 40 H 0.11 2.48 5.58 -51.93 -0.29 2.19 16 LS Contribution 309.09 15.07 4.66 4.66 Total: -1.00 -28.47 309.09 -8.67 -37.14 By element: Atomic # 1 Polarization: 7.09 SS G_CDS: -7.20 Total: -0.11 kcal Atomic # 6 Polarization: -19.58 SS G_CDS: -0.95 Total: -20.53 kcal Atomic # 7 Polarization: -37.65 SS G_CDS: -0.16 Total: -37.81 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.02 Total: 16.66 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -28.47 -8.67 -37.14 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000129113782.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.386 kcal (2) G-P(sol) polarization free energy of solvation -28.470 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.916 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.671 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.142 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.245 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds