Wall clock time and date at job start Mon Mar 30 2020 03:02:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86800 * 120.00008 * 2 1 4 4 H 1.48494 * 109.47494 * 270.00808 * 3 2 1 5 5 H 1.48498 * 109.46802 * 30.00786 * 3 2 1 6 6 H 1.48502 * 109.46977 * 150.00081 * 3 2 1 7 7 C 1.37878 * 120.00245 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00352 * 179.97438 * 7 2 1 9 9 C 1.50706 * 119.99810 * 359.97438 * 7 2 1 10 10 C 1.53002 * 109.46994 * 180.02562 * 9 7 2 11 11 C 1.52996 * 109.46891 * 179.97438 * 10 9 7 12 12 C 1.53002 * 109.46891 * 179.97438 * 11 10 9 13 13 N 1.46906 * 109.47053 * 179.97438 * 12 11 10 14 14 C 1.48003 * 110.99822 * 298.71705 * 13 12 11 15 15 C 1.50440 * 112.82500 * 191.34665 * 14 13 12 16 16 C 1.54307 * 108.50019 * 93.72657 * 15 14 13 17 17 C 1.45877 * 112.18787 * 281.46231 * 16 15 14 18 18 C 1.54313 * 112.18440 * 61.12014 * 17 16 15 19 19 C 1.48000 * 110.99953 * 169.99767 * 13 12 11 20 20 H 0.96999 * 120.00205 * 359.97438 * 1 2 3 21 21 H 1.08998 * 109.46836 * 59.99719 * 9 7 2 22 22 H 1.09001 * 109.46547 * 300.00073 * 9 7 2 23 23 H 1.09001 * 109.47142 * 59.99807 * 10 9 7 24 24 H 1.09004 * 109.47006 * 299.99754 * 10 9 7 25 25 H 1.09001 * 109.47372 * 59.99964 * 11 10 9 26 26 H 1.09004 * 109.47108 * 299.99708 * 11 10 9 27 27 H 1.08992 * 109.47056 * 59.99654 * 12 11 10 28 28 H 1.09004 * 109.47006 * 299.99770 * 12 11 10 29 29 H 1.08999 * 108.81263 * 312.21143 * 14 13 12 30 30 H 1.08998 * 108.81085 * 70.48522 * 14 13 12 31 31 H 1.09000 * 109.63258 * 334.02341 * 15 14 13 32 32 H 1.08999 * 109.63127 * 213.43336 * 15 14 13 33 33 H 1.09008 * 108.93862 * 160.76259 * 16 15 14 34 34 H 1.09001 * 108.86996 * 42.11382 * 16 15 14 35 35 H 1.09004 * 108.93890 * 300.42602 * 17 16 15 36 36 H 1.08995 * 108.93882 * 181.81754 * 17 16 15 37 37 H 1.08995 * 109.63170 * 161.75870 * 18 17 16 38 38 H 1.09001 * 109.62994 * 41.16594 * 18 17 16 39 39 H 1.08995 * 108.80731 * 205.70063 * 19 13 12 40 40 H 1.09000 * 108.80950 * 324.08562 * 19 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4964 2.0466 -1.4000 5 1 1.4466 2.6526 0.7002 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 6 1.4803 -4.9871 0.0001 12 6 2.4746 -6.1500 -0.0005 13 7 1.7401 -7.4222 0.0007 14 6 0.9012 -7.5492 1.2134 15 6 0.3455 -8.9352 1.3962 16 6 1.3004 -9.7287 2.3124 17 6 2.4779 -10.2086 1.5974 18 6 3.3187 -9.0520 1.0171 19 6 2.6531 -8.5620 -0.2398 20 1 -0.4850 0.8400 0.0004 21 1 0.6240 -2.5567 -0.8903 22 1 0.6247 -2.5570 0.8897 23 1 2.8720 -3.6043 0.8894 24 1 2.8719 -3.6043 -0.8906 25 1 0.8533 -5.0451 -0.8896 26 1 0.8540 -5.0446 0.8904 27 1 3.1019 -6.0921 0.8889 28 1 3.1006 -6.0923 -0.8910 29 1 1.5033 -7.2940 2.0855 30 1 0.0725 -6.8447 1.1429 31 1 0.2710 -9.4304 0.4281 32 1 -0.6403 -8.8765 1.8575 33 1 0.7650 -10.5834 2.7261 34 1 1.6216 -9.0835 3.1302 35 1 2.1568 -10.8564 0.7817 36 1 3.0971 -10.7866 2.2833 37 1 4.3219 -9.4092 0.7850 38 1 3.3746 -8.2402 1.7424 39 1 2.0840 -9.3815 -0.6787 40 1 3.4236 -8.2521 -0.9458 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000144002876.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:02:33 Heat of formation + Delta-G solvation = -48.907760 kcal Electronic energy + Delta-G solvation = -15714.550770 eV Core-core repulsion = 13334.005337 eV Total energy + Delta-G solvation = -2380.545433 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.32518 -37.01967 -35.41964 -33.81987 -33.02512 -30.45384 -27.68571 -25.98108 -25.53397 -23.16068 -21.76033 -21.37679 -20.34088 -18.43502 -17.19796 -16.80549 -16.52101 -16.18105 -15.47219 -15.09827 -14.56010 -14.46191 -14.20335 -13.94636 -13.62555 -13.34851 -13.19357 -13.03397 -12.76902 -12.36241 -12.33016 -12.10052 -11.96062 -11.82317 -11.56094 -11.44653 -11.34102 -11.24785 -11.07598 -10.92052 -10.55685 -9.08140 -8.19909 -6.31725 1.39380 1.41408 1.52497 2.40911 2.92262 3.12682 3.75960 3.84275 3.92687 4.16948 4.19001 4.21895 4.39155 4.45525 4.49370 4.59206 4.65041 4.73518 4.79782 4.84783 4.90483 4.93065 5.06505 5.13557 5.20291 5.24461 5.27488 5.28259 5.34180 5.34746 5.41624 5.47599 5.54744 5.76990 5.86263 6.18584 6.25040 6.32618 6.85609 7.37654 8.92115 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.059746 B = 0.004199 C = 0.004075 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 468.535015 B = 6665.946266 C = 6869.746807 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.002 4.002 3 Si 0.967 3.033 4 H -0.271 1.271 5 H -0.281 1.281 6 H -0.263 1.263 7 C -0.546 4.546 8 H 0.060 0.940 9 C 0.023 3.977 10 C -0.096 4.096 11 C -0.104 4.104 12 C 0.071 3.929 13 N -0.561 5.561 14 C 0.061 3.939 15 C -0.117 4.117 16 C -0.119 4.119 17 C -0.114 4.114 18 C -0.147 4.147 19 C 0.058 3.942 20 H 0.264 0.736 21 H -0.011 1.011 22 H -0.012 1.012 23 H 0.047 0.953 24 H 0.052 0.948 25 H 0.054 0.946 26 H 0.049 0.951 27 H 0.028 0.972 28 H 0.077 0.923 29 H 0.025 0.975 30 H 0.057 0.943 31 H 0.074 0.926 32 H 0.076 0.924 33 H 0.074 0.926 34 H 0.050 0.950 35 H 0.069 0.931 36 H 0.067 0.933 37 H 0.079 0.921 38 H 0.047 0.953 39 H 0.079 0.921 40 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.156 -20.821 2.749 21.625 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.200 4.200 3 Si 0.791 3.209 4 H -0.196 1.196 5 H -0.206 1.206 6 H -0.187 1.187 7 C -0.584 4.584 8 H 0.078 0.922 9 C -0.014 4.014 10 C -0.134 4.134 11 C -0.142 4.142 12 C -0.056 4.056 13 N -0.286 5.286 14 C -0.066 4.066 15 C -0.154 4.154 16 C -0.157 4.157 17 C -0.151 4.151 18 C -0.186 4.186 19 C -0.069 4.069 20 H 0.072 0.928 21 H 0.008 0.992 22 H 0.006 0.994 23 H 0.066 0.934 24 H 0.071 0.929 25 H 0.073 0.927 26 H 0.067 0.933 27 H 0.046 0.954 28 H 0.095 0.905 29 H 0.043 0.957 30 H 0.076 0.924 31 H 0.093 0.907 32 H 0.095 0.905 33 H 0.092 0.908 34 H 0.069 0.931 35 H 0.088 0.912 36 H 0.085 0.915 37 H 0.097 0.903 38 H 0.066 0.934 39 H 0.098 0.902 40 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 4.703 -20.731 2.386 21.392 hybrid contribution 0.540 1.239 0.700 1.523 sum 5.244 -19.492 3.086 20.419 Atomic orbital electron populations 1.70106 1.07891 1.27791 1.51712 1.26028 0.95799 1.03500 0.94671 0.85418 0.78639 0.78240 0.78574 1.19645 1.20634 1.18689 1.21742 0.93568 0.92503 1.50548 0.92184 1.19018 0.94495 0.93329 0.94544 1.21403 0.97973 0.93702 1.00364 1.21507 0.98090 0.93381 1.01192 1.22010 0.94847 0.88306 1.00471 1.61860 1.25545 1.02202 1.39004 1.21801 0.96258 0.98440 0.90074 1.21421 0.99014 0.94238 1.00754 1.20597 0.96607 1.00271 0.98186 1.20534 0.96537 0.97468 1.00604 1.21905 1.00068 0.98581 0.98070 1.21955 0.94668 0.93118 0.97113 0.92752 0.99229 0.99385 0.93378 0.92917 0.92736 0.93274 0.95386 0.90462 0.95666 0.92428 0.90746 0.90493 0.90773 0.93125 0.91233 0.91466 0.90268 0.93383 0.90236 0.91258 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.52 13.29 21.45 0.28 -58.23 16 2 C 0.00 -0.15 5.46 84.66 0.46 0.31 16 3 Si 0.97 45.19 29.54 68.60 2.03 47.21 16 4 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 5 H -0.28 -12.77 7.11 99.48 0.71 -12.07 16 6 H -0.26 -11.69 7.11 99.48 0.71 -10.99 16 7 C -0.55 -32.23 9.11 25.60 0.23 -32.00 16 8 H 0.06 3.39 7.74 -2.91 -0.02 3.36 16 9 C 0.02 1.29 4.97 29.85 0.15 1.44 16 10 C -0.10 -4.15 5.15 30.59 0.16 -3.99 16 11 C -0.10 -3.77 5.02 30.59 0.15 -3.61 16 12 C 0.07 2.10 4.86 86.30 0.42 2.52 16 13 N -0.56 -14.64 4.71 -900.27 -4.24 -18.88 16 14 C 0.06 1.53 4.32 85.26 0.37 1.90 16 15 C -0.12 -2.23 5.63 30.21 0.17 -2.06 16 16 C -0.12 -1.93 5.30 28.85 0.15 -1.78 16 17 C -0.11 -1.70 5.30 28.86 0.15 -1.55 16 18 C -0.15 -2.61 5.60 30.21 0.17 -2.44 16 19 C 0.06 1.19 5.16 85.26 0.44 1.63 16 20 H 0.26 15.42 8.31 -92.71 -0.77 14.65 16 21 H -0.01 -0.64 8.14 -2.39 -0.02 -0.66 16 22 H -0.01 -0.73 8.14 -2.39 -0.02 -0.75 16 23 H 0.05 2.01 8.14 -2.39 -0.02 1.99 16 24 H 0.05 2.19 8.14 -2.38 -0.02 2.17 16 25 H 0.05 2.07 8.14 -2.39 -0.02 2.05 16 26 H 0.05 1.82 6.67 -2.38 -0.02 1.81 16 27 H 0.03 0.82 7.81 -2.39 -0.02 0.80 16 28 H 0.08 2.16 7.80 -2.38 -0.02 2.14 16 29 H 0.03 0.66 6.44 -2.39 -0.02 0.64 16 30 H 0.06 1.62 6.91 -2.39 -0.02 1.60 16 31 H 0.07 1.43 7.08 -2.39 -0.02 1.41 16 32 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 33 H 0.07 0.99 8.14 -2.38 -0.02 0.97 16 34 H 0.05 0.91 7.51 -2.39 -0.02 0.89 16 35 H 0.07 0.94 7.52 -2.38 -0.02 0.93 16 36 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 37 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 38 H 0.05 1.03 6.74 -2.39 -0.02 1.01 16 39 H 0.08 1.48 6.59 -2.39 -0.02 1.47 16 40 H 0.07 1.36 7.64 -2.39 -0.02 1.34 16 Total: -1.00 -64.95 302.74 2.06 -62.89 By element: Atomic # 1 Polarization: 5.69 SS G_CDS: 0.96 Total: 6.65 kcal Atomic # 6 Polarization: -42.67 SS G_CDS: 3.03 Total: -39.64 kcal Atomic # 7 Polarization: -73.16 SS G_CDS: -3.96 Total: -77.12 kcal Atomic # 14 Polarization: 45.19 SS G_CDS: 2.03 Total: 47.21 kcal Total: -64.95 2.06 -62.89 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000144002876.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.979 kcal (2) G-P(sol) polarization free energy of solvation -64.945 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.967 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.059 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.887 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.908 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds