Wall clock time and date at job start Mon Mar 30 2020 03:41:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.47398 * 2 1 4 4 C 1.53005 * 109.47037 * 59.99664 * 3 2 1 5 5 C 1.53005 * 109.46964 * 300.00101 * 3 2 1 6 6 C 1.52998 * 109.47398 * 180.02562 * 3 2 1 7 7 N 1.46899 * 109.47035 * 185.48562 * 6 3 2 8 8 C 1.46897 * 111.00103 * 184.25772 * 7 6 3 9 9 C 1.53002 * 109.47383 * 185.37941 * 8 7 6 10 10 C 1.50696 * 115.54995 * 294.79435 * 9 8 7 11 11 H 1.08006 * 120.00351 * 95.09915 * 10 9 8 12 12 C 1.37881 * 120.00080 * 274.82100 * 10 9 8 13 13 N 1.31509 * 120.00340 * 355.42834 * 12 10 9 14 14 Si 1.86802 * 120.00052 * 175.42602 * 12 10 9 15 15 H 1.48493 * 109.47343 * 59.99989 * 14 12 10 16 16 H 1.48500 * 109.47108 * 180.02562 * 14 12 10 17 17 H 1.48506 * 109.46860 * 299.99735 * 14 12 10 18 18 C 1.52996 * 117.49789 * 80.46615 * 9 8 7 19 19 C 1.53005 * 117.49857 * 149.12538 * 9 8 7 20 20 H 1.08997 * 109.46822 * 59.99944 * 1 2 3 21 21 H 1.08994 * 109.47219 * 180.02562 * 1 2 3 22 22 H 1.09000 * 109.47058 * 300.00326 * 1 2 3 23 23 H 1.08992 * 109.47453 * 240.00149 * 2 1 3 24 24 H 1.09003 * 109.47450 * 119.99441 * 2 1 3 25 25 H 1.09008 * 109.47035 * 180.02562 * 4 3 2 26 26 H 1.08997 * 109.47334 * 300.00463 * 4 3 2 27 27 H 1.08998 * 109.46748 * 60.00801 * 4 3 2 28 28 H 1.08998 * 109.46845 * 304.95582 * 5 3 2 29 29 H 1.08997 * 109.46974 * 64.95575 * 5 3 2 30 30 H 1.08996 * 109.46870 * 184.96007 * 5 3 2 31 31 H 1.08997 * 109.47260 * 65.48951 * 6 3 2 32 32 H 1.09005 * 109.46949 * 305.48196 * 6 3 2 33 33 H 1.00899 * 111.00605 * 308.21692 * 7 6 3 34 34 H 1.09003 * 109.46935 * 65.38409 * 8 7 6 35 35 H 1.08994 * 109.47436 * 305.38532 * 8 7 6 36 36 H 0.96998 * 120.00664 * 185.00638 * 13 12 10 37 37 H 1.09001 * 117.49617 * 215.00436 * 18 9 8 38 38 H 1.08999 * 117.49819 * 0.02562 * 18 9 8 39 39 H 1.08999 * 117.49796 * 359.97438 * 19 9 8 40 40 H 1.09000 * 117.49561 * 144.97508 * 19 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 1.5300 2.1638 1.2492 5 6 1.5300 2.1638 -1.2493 6 6 3.5700 1.4425 -0.0006 7 7 4.0597 2.8211 0.1318 8 6 5.5246 2.8712 0.0337 9 6 6.0058 4.2972 0.3090 10 6 5.5811 5.3327 -0.7001 11 1 4.6969 5.9275 -0.5242 12 6 6.3244 5.5249 -1.8454 13 7 7.4518 4.8695 -2.0153 14 14 5.7301 6.7161 -3.1558 15 1 5.6129 8.0763 -2.5718 16 1 6.7010 6.7411 -4.2791 17 1 4.4034 6.2773 -3.6586 18 6 6.1123 4.7370 1.7705 19 6 7.3810 4.4658 0.9581 20 1 -0.3633 0.5138 -0.8900 21 1 -0.3633 -1.0276 0.0005 22 1 -0.3633 0.5139 0.8900 23 1 1.8933 -0.5138 -0.8899 24 1 1.8934 -0.5137 0.8900 25 1 1.8930 3.1916 1.2490 26 1 0.4400 2.1638 1.2493 27 1 1.8934 1.6500 2.1392 28 1 1.8190 1.6012 -2.1370 29 1 0.4437 2.2413 -1.2060 30 1 1.9641 3.1625 -1.2948 31 1 3.9330 1.0163 -0.9359 32 1 3.9337 0.8458 0.8360 33 1 3.6306 3.4248 -0.5535 34 1 5.8321 2.5711 -0.9681 35 1 5.9612 2.1926 0.7663 36 1 8.0110 5.0576 -2.7852 37 1 5.8750 5.7754 2.0021 38 1 5.8399 4.0103 2.5359 39 1 7.9427 3.5608 1.1894 40 1 7.9786 5.3255 0.6550 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000232870267.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:41:19 Heat of formation + Delta-G solvation = -1.273315 kcal Electronic energy + Delta-G solvation = -16267.540343 eV Core-core repulsion = 13889.060494 eV Total energy + Delta-G solvation = -2378.479849 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -38.31246 -36.54597 -33.39800 -31.85041 -29.82063 -26.98289 -26.52258 -25.36688 -24.10971 -21.84051 -20.82798 -19.09844 -18.16177 -15.99472 -15.26637 -14.82028 -14.58050 -14.45065 -13.95374 -13.62955 -13.11243 -12.97603 -12.48933 -12.10598 -11.97277 -11.60390 -11.40872 -11.32886 -11.14908 -10.92976 -10.89450 -10.83109 -10.46338 -10.26827 -10.21043 -10.11820 -10.01784 -9.24154 -8.79283 -8.34547 -7.99067 -7.39571 -5.97750 -4.05096 3.30841 3.36211 3.38598 4.42208 4.78282 5.01908 5.07247 5.24412 5.30176 5.42173 5.58423 5.61228 5.69488 5.82998 5.99228 5.99718 6.05204 6.08866 6.15810 6.22553 6.27508 6.32083 6.34332 6.50093 6.54955 6.61905 6.70228 6.81656 6.90746 6.94468 6.98891 7.26179 7.57465 7.67147 7.92019 8.08461 8.36941 8.55097 8.98400 9.60317 11.09410 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.027760 B = 0.007367 C = 0.006402 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1008.396960 B = 3799.688295 C = 4372.621051 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.113 4.113 3 C -0.063 4.063 4 C -0.130 4.130 5 C -0.146 4.146 6 C 0.068 3.932 7 N -0.678 5.678 8 C 0.106 3.894 9 C 0.047 3.953 10 C -0.491 4.491 11 H 0.059 0.941 12 C 0.069 3.931 13 N -0.881 5.881 14 Si 0.887 3.113 15 H -0.277 1.277 16 H -0.289 1.289 17 H -0.277 1.277 18 C -0.201 4.201 19 C -0.157 4.157 20 H 0.055 0.945 21 H 0.046 0.954 22 H 0.057 0.943 23 H 0.057 0.943 24 H 0.059 0.941 25 H 0.071 0.929 26 H 0.043 0.957 27 H 0.047 0.953 28 H 0.048 0.952 29 H 0.053 0.947 30 H 0.062 0.938 31 H 0.018 0.982 32 H 0.060 0.940 33 H 0.345 0.655 34 H 0.028 0.972 35 H 0.037 0.963 36 H 0.259 0.741 37 H 0.071 0.929 38 H 0.063 0.937 39 H 0.057 0.943 40 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.962 -7.482 2.843 12.779 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.151 4.151 3 C -0.064 4.064 4 C -0.187 4.187 5 C -0.203 4.203 6 C -0.062 4.062 7 N -0.310 5.310 8 C -0.023 4.023 9 C 0.047 3.953 10 C -0.529 4.529 11 H 0.077 0.923 12 C -0.134 4.134 13 N -0.518 5.518 14 Si 0.714 3.286 15 H -0.203 1.203 16 H -0.214 1.214 17 H -0.202 1.202 18 C -0.238 4.238 19 C -0.195 4.195 20 H 0.074 0.926 21 H 0.066 0.934 22 H 0.076 0.924 23 H 0.076 0.924 24 H 0.078 0.922 25 H 0.090 0.910 26 H 0.062 0.938 27 H 0.066 0.934 28 H 0.068 0.932 29 H 0.072 0.928 30 H 0.081 0.919 31 H 0.036 0.964 32 H 0.079 0.921 33 H 0.166 0.834 34 H 0.046 0.954 35 H 0.055 0.945 36 H 0.069 0.931 37 H 0.090 0.910 38 H 0.082 0.918 39 H 0.076 0.924 40 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -9.826 -7.567 3.351 12.846 hybrid contribution 0.074 0.446 -1.756 1.813 sum -9.752 -7.121 1.595 12.180 Atomic orbital electron populations 1.21856 0.96190 1.00901 1.02066 1.21548 0.95685 0.96316 1.01507 1.20581 0.95033 0.94605 0.96152 1.21754 0.98958 1.01890 0.96126 1.21949 1.00617 1.00947 0.96804 1.21946 0.93188 0.92158 0.98929 1.60506 1.07421 1.06558 1.56535 1.21427 0.85984 0.97001 0.97874 1.18741 0.94999 0.92159 0.89447 1.20432 1.10960 1.19096 1.02440 0.92320 1.25004 0.95021 0.95555 0.97790 1.69995 1.11750 1.40710 1.29319 0.86756 0.78599 0.81678 0.81530 1.20297 1.21432 1.20221 1.22860 1.04692 0.99745 0.96513 1.22492 0.91356 1.00758 1.04864 0.92595 0.93443 0.92426 0.92450 0.92244 0.90996 0.93807 0.93370 0.93249 0.92768 0.91879 0.96351 0.92147 0.83434 0.95379 0.94477 0.93114 0.91019 0.91811 0.92436 0.90062 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.55 9.21 37.16 0.34 -1.21 16 2 C -0.11 -1.31 4.99 -26.73 -0.13 -1.45 16 3 C -0.06 -0.87 0.62 -154.50 -0.10 -0.96 16 4 C -0.13 -1.77 7.90 37.16 0.29 -1.48 16 5 C -0.15 -1.99 7.86 37.16 0.29 -1.70 16 6 C 0.07 1.11 4.66 -3.83 -0.02 1.09 16 7 N -0.68 -13.30 5.50 -113.78 -0.63 -13.92 16 8 C 0.11 2.41 5.54 -3.82 -0.02 2.38 16 9 C 0.05 1.17 1.65 -155.66 -0.26 0.92 16 10 C -0.49 -13.25 8.33 -34.44 -0.29 -13.54 16 11 H 0.06 1.59 7.82 -52.48 -0.41 1.18 16 12 C 0.07 1.88 5.43 -17.82 -0.10 1.79 16 13 N -0.88 -25.01 12.64 55.43 0.70 -24.30 16 14 Si 0.89 21.03 29.54 -169.99 -5.02 16.00 16 15 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 16 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 17 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 18 C -0.20 -4.59 9.96 -26.70 -0.27 -4.86 16 19 C -0.16 -3.82 9.13 -26.69 -0.24 -4.06 16 20 H 0.06 0.56 6.54 -51.93 -0.34 0.22 16 21 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 22 H 0.06 0.57 6.43 -51.93 -0.33 0.24 16 23 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 24 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 25 H 0.07 1.12 7.46 -51.92 -0.39 0.73 16 26 H 0.04 0.52 6.43 -51.93 -0.33 0.19 16 27 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 28 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 29 H 0.05 0.65 6.71 -51.93 -0.35 0.30 16 30 H 0.06 0.96 6.41 -51.93 -0.33 0.63 16 31 H 0.02 0.31 8.14 -51.93 -0.42 -0.11 16 32 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 33 H 0.35 7.10 6.36 -39.29 -0.25 6.85 16 34 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.04 0.81 8.08 -51.93 -0.42 0.39 16 36 H 0.26 7.08 8.32 -40.82 -0.34 6.74 16 37 H 0.07 1.64 8.14 -51.93 -0.42 1.21 16 38 H 0.06 1.36 8.14 -51.93 -0.42 0.93 16 39 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 40 H 0.08 2.12 8.14 -51.93 -0.42 1.70 16 LS Contribution 312.54 15.07 4.71 4.71 Total: -1.00 -27.23 312.54 -8.09 -35.32 By element: Atomic # 1 Polarization: 12.63 SS G_CDS: -7.36 Total: 5.27 kcal Atomic # 6 Polarization: -22.58 SS G_CDS: -0.49 Total: -23.07 kcal Atomic # 7 Polarization: -38.30 SS G_CDS: 0.07 Total: -38.23 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.02 Total: 16.00 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -27.23 -8.09 -35.32 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000232870267.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.044 kcal (2) G-P(sol) polarization free energy of solvation -27.225 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.819 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.092 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.317 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.273 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds