Wall clock time and date at job start Mon Mar 30 2020 03:41:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.47398 * 2 1 4 4 C 1.53005 * 109.47037 * 59.99664 * 3 2 1 5 5 C 1.53005 * 109.46964 * 300.00101 * 3 2 1 6 6 C 1.52998 * 109.47398 * 180.02562 * 3 2 1 7 7 N 1.46899 * 109.47035 * 185.48562 * 6 3 2 8 8 C 1.46897 * 111.00103 * 184.25772 * 7 6 3 9 9 C 1.53002 * 109.47383 * 185.37941 * 8 7 6 10 10 C 1.50696 * 115.54995 * 294.79435 * 9 8 7 11 11 H 1.08006 * 120.00351 * 95.09915 * 10 9 8 12 12 C 1.37881 * 120.00080 * 274.82100 * 10 9 8 13 13 N 1.31509 * 120.00340 * 355.42834 * 12 10 9 14 14 Si 1.86802 * 120.00052 * 175.42602 * 12 10 9 15 15 H 1.48493 * 109.47343 * 59.99989 * 14 12 10 16 16 H 1.48500 * 109.47108 * 180.02562 * 14 12 10 17 17 H 1.48506 * 109.46860 * 299.99735 * 14 12 10 18 18 C 1.52996 * 117.49789 * 80.46615 * 9 8 7 19 19 C 1.53005 * 117.49857 * 149.12538 * 9 8 7 20 20 H 1.08997 * 109.46822 * 59.99944 * 1 2 3 21 21 H 1.08994 * 109.47219 * 180.02562 * 1 2 3 22 22 H 1.09000 * 109.47058 * 300.00326 * 1 2 3 23 23 H 1.08992 * 109.47453 * 240.00149 * 2 1 3 24 24 H 1.09003 * 109.47450 * 119.99441 * 2 1 3 25 25 H 1.09008 * 109.47035 * 180.02562 * 4 3 2 26 26 H 1.08997 * 109.47334 * 300.00463 * 4 3 2 27 27 H 1.08998 * 109.46748 * 60.00801 * 4 3 2 28 28 H 1.08998 * 109.46845 * 304.95582 * 5 3 2 29 29 H 1.08997 * 109.46974 * 64.95575 * 5 3 2 30 30 H 1.08996 * 109.46870 * 184.96007 * 5 3 2 31 31 H 1.08997 * 109.47260 * 65.48951 * 6 3 2 32 32 H 1.09005 * 109.46949 * 305.48196 * 6 3 2 33 33 H 1.00899 * 111.00605 * 308.21692 * 7 6 3 34 34 H 1.09003 * 109.46935 * 65.38409 * 8 7 6 35 35 H 1.08994 * 109.47436 * 305.38532 * 8 7 6 36 36 H 0.96998 * 120.00664 * 185.00638 * 13 12 10 37 37 H 1.09001 * 117.49617 * 215.00436 * 18 9 8 38 38 H 1.08999 * 117.49819 * 0.02562 * 18 9 8 39 39 H 1.08999 * 117.49796 * 359.97438 * 19 9 8 40 40 H 1.09000 * 117.49561 * 144.97508 * 19 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 1.5300 2.1638 1.2492 5 6 1.5300 2.1638 -1.2493 6 6 3.5700 1.4425 -0.0006 7 7 4.0597 2.8211 0.1318 8 6 5.5246 2.8712 0.0337 9 6 6.0058 4.2972 0.3090 10 6 5.5811 5.3327 -0.7001 11 1 4.6969 5.9275 -0.5242 12 6 6.3244 5.5249 -1.8454 13 7 7.4518 4.8695 -2.0153 14 14 5.7301 6.7161 -3.1558 15 1 5.6129 8.0763 -2.5718 16 1 6.7010 6.7411 -4.2791 17 1 4.4034 6.2773 -3.6586 18 6 6.1123 4.7370 1.7705 19 6 7.3810 4.4658 0.9581 20 1 -0.3633 0.5138 -0.8900 21 1 -0.3633 -1.0276 0.0005 22 1 -0.3633 0.5139 0.8900 23 1 1.8933 -0.5138 -0.8899 24 1 1.8934 -0.5137 0.8900 25 1 1.8930 3.1916 1.2490 26 1 0.4400 2.1638 1.2493 27 1 1.8934 1.6500 2.1392 28 1 1.8190 1.6012 -2.1370 29 1 0.4437 2.2413 -1.2060 30 1 1.9641 3.1625 -1.2948 31 1 3.9330 1.0163 -0.9359 32 1 3.9337 0.8458 0.8360 33 1 3.6306 3.4248 -0.5535 34 1 5.8321 2.5711 -0.9681 35 1 5.9612 2.1926 0.7663 36 1 8.0110 5.0576 -2.7852 37 1 5.8750 5.7754 2.0021 38 1 5.8399 4.0103 2.5359 39 1 7.9427 3.5608 1.1894 40 1 7.9786 5.3255 0.6550 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000232870267.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:41:18 Heat of formation + Delta-G solvation = -15.431355 kcal Electronic energy + Delta-G solvation = -16268.154282 eV Core-core repulsion = 13889.060494 eV Total energy + Delta-G solvation = -2379.093787 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.58518 -38.31247 -34.89060 -33.92226 -30.88032 -28.15380 -28.03126 -27.21445 -25.53428 -23.14788 -22.68843 -21.01850 -19.32658 -17.92721 -16.73458 -16.63922 -16.05852 -15.61523 -15.54673 -15.08623 -14.56232 -14.32077 -14.05343 -13.42374 -13.31367 -13.01971 -12.89419 -12.81888 -12.63651 -12.59760 -12.47329 -12.32649 -11.96941 -11.89561 -11.49142 -11.30002 -11.22000 -11.03963 -10.80412 -10.35642 -9.90485 -9.05252 -8.06708 -6.19350 1.42068 1.42578 1.49897 2.43264 3.20278 3.33361 3.75514 3.92486 4.01036 4.10610 4.35834 4.46122 4.56467 4.64230 4.68367 4.71608 4.79208 4.84600 4.89378 4.97952 5.01877 5.03723 5.09271 5.15952 5.18598 5.20986 5.26343 5.30960 5.32513 5.45979 5.61963 5.66478 5.71686 5.75282 5.82504 6.40043 6.49756 6.69977 6.90490 7.48762 8.99876 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.027760 B = 0.007367 C = 0.006402 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1008.396960 B = 3799.688295 C = 4372.621051 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.109 4.109 3 C -0.059 4.059 4 C -0.125 4.125 5 C -0.144 4.144 6 C 0.067 3.933 7 N -0.673 5.673 8 C 0.120 3.880 9 C 0.023 3.977 10 C -0.501 4.501 11 H 0.052 0.948 12 C 0.024 3.976 13 N -0.910 5.910 14 Si 0.946 3.054 15 H -0.274 1.274 16 H -0.288 1.288 17 H -0.269 1.269 18 C -0.178 4.178 19 C -0.162 4.162 20 H 0.056 0.944 21 H 0.060 0.940 22 H 0.060 0.940 23 H 0.057 0.943 24 H 0.063 0.937 25 H 0.048 0.952 26 H 0.063 0.937 27 H 0.048 0.952 28 H 0.048 0.952 29 H 0.073 0.927 30 H 0.041 0.959 31 H 0.010 0.990 32 H 0.065 0.935 33 H 0.339 0.661 34 H -0.004 1.004 35 H 0.045 0.955 36 H 0.258 0.742 37 H 0.070 0.930 38 H 0.085 0.915 39 H 0.068 0.932 40 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.674 -8.075 3.199 14.551 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.147 4.147 3 C -0.059 4.059 4 C -0.183 4.183 5 C -0.202 4.202 6 C -0.062 4.062 7 N -0.305 5.305 8 C -0.009 4.009 9 C 0.023 3.977 10 C -0.539 4.539 11 H 0.071 0.929 12 C -0.176 4.176 13 N -0.548 5.548 14 Si 0.772 3.228 15 H -0.199 1.199 16 H -0.214 1.214 17 H -0.195 1.195 18 C -0.215 4.215 19 C -0.201 4.201 20 H 0.075 0.925 21 H 0.079 0.921 22 H 0.079 0.921 23 H 0.075 0.925 24 H 0.082 0.918 25 H 0.067 0.933 26 H 0.082 0.918 27 H 0.068 0.932 28 H 0.067 0.933 29 H 0.092 0.908 30 H 0.060 0.940 31 H 0.028 0.972 32 H 0.083 0.917 33 H 0.158 0.842 34 H 0.014 0.986 35 H 0.064 0.936 36 H 0.067 0.933 37 H 0.089 0.911 38 H 0.103 0.897 39 H 0.086 0.914 40 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -11.555 -8.162 3.720 14.628 hybrid contribution 0.603 0.612 -1.827 2.019 sum -10.952 -7.550 1.892 13.436 Atomic orbital electron populations 1.21834 0.94674 1.01935 1.02271 1.21514 0.96941 0.94483 1.01770 1.20557 0.92790 0.96281 0.96270 1.21700 1.00188 1.00367 0.95999 1.21936 1.01746 0.99667 0.96816 1.22058 0.95378 0.90166 0.98633 1.60504 1.05450 1.08377 1.56121 1.21167 0.87880 0.95728 0.96166 1.18917 0.95478 0.92974 0.90374 1.20661 1.10642 1.19420 1.03216 0.92946 1.25673 0.95096 0.97232 0.99622 1.70109 1.12747 1.42083 1.29863 0.85800 0.78244 0.79738 0.78987 1.19889 1.21391 1.19453 1.22827 1.02695 1.00172 0.95795 1.22393 0.91484 1.00325 1.05854 0.92483 0.92091 0.92076 0.92466 0.91794 0.93250 0.91839 0.93239 0.93295 0.90828 0.93961 0.97176 0.91672 0.84153 0.98596 0.93619 0.93309 0.91118 0.89709 0.91388 0.92472 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.58 9.21 71.98 0.66 -1.91 16 2 C -0.11 -2.28 4.99 30.59 0.15 -2.12 16 3 C -0.06 -1.51 0.62 -52.18 -0.03 -1.54 16 4 C -0.13 -3.17 7.90 71.98 0.57 -2.60 16 5 C -0.14 -3.74 7.86 71.98 0.57 -3.18 16 6 C 0.07 2.15 4.66 86.30 0.40 2.55 16 7 N -0.67 -26.23 5.50 -513.90 -2.83 -29.06 16 8 C 0.12 5.47 5.54 86.30 0.48 5.95 16 9 C 0.02 1.16 1.65 -52.93 -0.09 1.07 16 10 C -0.50 -27.24 8.33 25.60 0.21 -27.03 16 11 H 0.05 2.85 7.82 -2.91 -0.02 2.82 16 12 C 0.02 1.30 5.43 84.66 0.46 1.76 16 13 N -0.91 -52.46 12.64 21.45 0.27 -52.19 16 14 Si 0.95 43.37 29.54 68.60 2.03 45.39 16 15 H -0.27 -12.29 7.11 99.48 0.71 -11.58 16 16 H -0.29 -13.11 7.11 99.48 0.71 -12.40 16 17 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 18 C -0.18 -7.95 9.96 30.62 0.30 -7.65 16 19 C -0.16 -7.94 9.13 30.62 0.28 -7.66 16 20 H 0.06 0.97 6.54 -2.39 -0.02 0.95 16 21 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 22 H 0.06 1.01 6.43 -2.39 -0.02 1.00 16 23 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 24 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 25 H 0.05 1.47 7.46 -2.38 -0.02 1.46 16 26 H 0.06 1.35 6.43 -2.39 -0.02 1.33 16 27 H 0.05 1.23 8.14 -2.39 -0.02 1.21 16 28 H 0.05 1.25 8.14 -2.39 -0.02 1.23 16 29 H 0.07 1.61 6.71 -2.39 -0.02 1.59 16 30 H 0.04 1.26 6.41 -2.39 -0.02 1.25 16 31 H 0.01 0.34 8.14 -2.39 -0.02 0.32 16 32 H 0.06 2.02 8.14 -2.38 -0.02 2.00 16 33 H 0.34 14.04 6.36 -89.70 -0.57 13.47 16 34 H 0.00 -0.22 8.14 -2.39 -0.02 -0.24 16 35 H 0.05 1.97 8.08 -2.39 -0.02 1.95 16 36 H 0.26 14.31 8.32 -92.71 -0.77 13.54 16 37 H 0.07 3.16 8.14 -2.39 -0.02 3.14 16 38 H 0.08 3.43 8.14 -2.39 -0.02 3.41 16 39 H 0.07 3.12 8.14 -2.39 -0.02 3.10 16 40 H 0.06 3.04 8.14 -2.39 -0.02 3.02 16 Total: -1.00 -57.39 312.54 3.85 -53.54 By element: Atomic # 1 Polarization: 24.27 SS G_CDS: 0.41 Total: 24.67 kcal Atomic # 6 Polarization: -46.33 SS G_CDS: 3.97 Total: -42.37 kcal Atomic # 7 Polarization: -78.69 SS G_CDS: -2.56 Total: -81.25 kcal Atomic # 14 Polarization: 43.37 SS G_CDS: 2.03 Total: 45.39 kcal Total: -57.39 3.85 -53.54 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000232870267.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.112 kcal (2) G-P(sol) polarization free energy of solvation -57.390 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.278 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.847 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.543 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.431 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds