Wall clock time and date at job start Mon Mar 30 2020 03:14:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53004 * 109.47045 * 2 1 4 4 C 1.52990 * 112.84981 * 295.84544 * 3 2 1 5 5 N 1.46902 * 109.47186 * 304.44207 * 4 3 2 6 6 C 1.46903 * 111.00152 * 174.52837 * 5 4 3 7 7 C 1.53003 * 109.47120 * 180.02562 * 6 5 4 8 8 C 1.52998 * 109.47118 * 180.02562 * 7 6 5 9 9 C 1.50699 * 109.47070 * 180.02562 * 8 7 6 10 10 H 1.07998 * 120.00018 * 0.02562 * 9 8 7 11 11 C 1.37880 * 119.99995 * 179.97438 * 9 8 7 12 12 N 1.31511 * 119.99880 * 0.02562 * 11 9 8 13 13 Si 1.86796 * 120.00128 * 179.97438 * 11 9 8 14 14 H 1.48499 * 109.47083 * 90.00445 * 13 11 9 15 15 H 1.48498 * 109.47425 * 210.00771 * 13 11 9 16 16 H 1.48499 * 109.47046 * 330.00774 * 13 11 9 17 17 C 1.53787 * 113.61181 * 67.04022 * 3 2 1 18 18 C 1.53951 * 87.01816 * 89.22758 * 17 3 2 19 19 C 1.53777 * 87.11296 * 25.36255 * 18 17 3 20 20 H 1.09000 * 109.47283 * 56.00091 * 1 2 3 21 21 H 1.09001 * 109.47235 * 176.00439 * 1 2 3 22 22 H 1.09005 * 109.46870 * 295.99816 * 1 2 3 23 23 H 1.09004 * 109.46873 * 240.00011 * 2 1 3 24 24 H 1.09003 * 109.47409 * 120.00153 * 2 1 3 25 25 H 1.08997 * 109.47432 * 184.44785 * 4 3 2 26 26 H 1.08995 * 109.47779 * 64.44513 * 4 3 2 27 27 H 1.00895 * 111.00401 * 298.48661 * 5 4 3 28 28 H 1.08996 * 109.47031 * 300.00238 * 6 5 4 29 29 H 1.08998 * 109.46845 * 60.00830 * 6 5 4 30 30 H 1.09001 * 109.47403 * 300.00756 * 7 6 5 31 31 H 1.08999 * 109.46786 * 60.00118 * 7 6 5 32 32 H 1.09005 * 109.46959 * 300.00162 * 8 7 6 33 33 H 1.08999 * 109.47467 * 60.00202 * 8 7 6 34 34 H 0.97000 * 120.00258 * 179.97438 * 12 11 9 35 35 H 1.09004 * 113.61072 * 203.74907 * 17 3 2 36 36 H 1.09002 * 113.61155 * 334.64897 * 17 3 2 37 37 H 1.08999 * 113.54294 * 270.80959 * 18 17 3 38 38 H 1.08998 * 113.74129 * 139.94172 * 18 17 3 39 39 H 1.09009 * 113.61358 * 220.08970 * 19 18 17 40 40 H 1.09000 * 113.69260 * 89.19972 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.6585 2.2075 -1.2688 5 7 2.1400 1.4734 -2.4466 6 6 1.6802 2.1101 -3.6881 7 6 2.1998 1.3185 -4.8900 8 6 1.7215 1.9820 -6.1830 9 6 2.2327 1.2020 -7.3667 10 1 2.8379 0.3209 -7.2123 11 6 1.9270 1.6126 -8.6470 12 7 1.1897 2.6853 -8.8350 13 14 2.5612 0.6462 -10.1143 14 1 1.5745 -0.4011 -10.4812 15 1 2.7588 1.5649 -11.2642 16 1 3.8548 0.0065 -9.7640 17 6 1.7270 2.2065 1.2975 18 6 3.0685 1.6781 1.8372 19 6 3.5263 1.5704 0.3731 20 1 -0.3634 0.5746 -0.8520 21 1 -0.3634 -1.0252 -0.0716 22 1 -0.3633 0.4505 0.9237 23 1 1.8933 -0.5139 -0.8900 24 1 1.8934 -0.5139 0.8900 25 1 2.1138 3.1976 -1.2469 26 1 0.5744 2.3072 -1.3210 27 1 3.1453 1.3892 -2.4343 28 1 0.5905 2.1249 -3.7068 29 1 2.0584 3.1313 -3.7343 30 1 3.2895 1.3032 -4.8714 31 1 1.8213 0.2974 -4.8436 32 1 0.6317 1.9976 -6.2017 33 1 2.1003 3.0030 -6.2292 34 1 0.9749 2.9744 -9.7357 35 1 1.7029 3.2890 1.1718 36 1 0.8583 1.8219 1.8319 37 1 2.9861 0.7150 2.3409 38 1 3.6281 2.4122 2.4168 39 1 4.1082 0.6730 0.1624 40 1 3.9954 2.4779 -0.0070 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000232953221.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:14:18 Heat of formation + Delta-G solvation = -14.589034 kcal Electronic energy + Delta-G solvation = -15546.544662 eV Core-core repulsion = 13167.487400 eV Total energy + Delta-G solvation = -2379.057262 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.88595 -35.92813 -33.40812 -32.26232 -31.03599 -27.64795 -25.87561 -25.37361 -23.53265 -22.31890 -21.52119 -20.08136 -17.95372 -16.33238 -15.89251 -15.43964 -15.11773 -14.59456 -14.24194 -13.85598 -13.67538 -12.99212 -12.63150 -12.49546 -12.23540 -12.03560 -11.68292 -11.53942 -11.26932 -11.19537 -11.08393 -10.80339 -10.53288 -10.50981 -10.31686 -10.06055 -9.94319 -9.64555 -9.26807 -9.00410 -8.31139 -8.05778 -5.96351 -3.98276 3.34615 3.40445 3.44232 4.28749 4.49614 4.52513 4.58463 4.75128 4.88941 5.09635 5.33937 5.39419 5.49355 5.54831 5.58698 5.65454 5.68937 5.74868 5.80221 5.88211 5.90547 5.94721 5.98563 6.12011 6.17338 6.36555 6.38550 6.46790 6.52280 6.77587 6.83421 7.18779 7.43495 7.71510 7.73695 7.88341 8.04479 8.47978 9.09070 9.65533 11.15169 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.053010 B = 0.004102 C = 0.004073 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 528.076288 B = 6824.539885 C = 6873.331183 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.090 4.090 3 C -0.073 4.073 4 C 0.073 3.927 5 N -0.686 5.686 6 C 0.059 3.941 7 C -0.106 4.106 8 C 0.021 3.979 9 C -0.518 4.518 10 H 0.055 0.945 11 C 0.055 3.945 12 N -0.897 5.897 13 Si 0.892 3.108 14 H -0.280 1.280 15 H -0.287 1.287 16 H -0.274 1.274 17 C -0.134 4.134 18 C -0.140 4.140 19 C -0.136 4.136 20 H 0.060 0.940 21 H 0.049 0.951 22 H 0.045 0.955 23 H 0.079 0.921 24 H 0.051 0.949 25 H 0.024 0.976 26 H 0.070 0.930 27 H 0.336 0.664 28 H 0.065 0.935 29 H 0.021 0.979 30 H 0.044 0.956 31 H 0.055 0.945 32 H 0.015 0.985 33 H 0.013 0.987 34 H 0.260 0.740 35 H 0.077 0.923 36 H 0.067 0.933 37 H 0.078 0.922 38 H 0.062 0.938 39 H 0.067 0.933 40 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.560 -1.792 20.280 20.419 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.127 4.127 3 C -0.073 4.073 4 C -0.057 4.057 5 N -0.316 5.316 6 C -0.069 4.069 7 C -0.144 4.144 8 C -0.016 4.016 9 C -0.556 4.556 10 H 0.073 0.927 11 C -0.145 4.145 12 N -0.537 5.537 13 Si 0.720 3.280 14 H -0.207 1.207 15 H -0.213 1.213 16 H -0.199 1.199 17 C -0.172 4.172 18 C -0.178 4.178 19 C -0.173 4.173 20 H 0.079 0.921 21 H 0.068 0.932 22 H 0.065 0.935 23 H 0.098 0.902 24 H 0.070 0.930 25 H 0.042 0.958 26 H 0.088 0.912 27 H 0.153 0.847 28 H 0.083 0.917 29 H 0.040 0.960 30 H 0.062 0.938 31 H 0.074 0.926 32 H 0.034 0.966 33 H 0.031 0.969 34 H 0.069 0.931 35 H 0.095 0.905 36 H 0.086 0.914 37 H 0.096 0.904 38 H 0.081 0.919 39 H 0.086 0.914 40 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 0.962 -2.133 20.147 20.282 hybrid contribution 0.853 0.449 -0.943 1.349 sum 1.814 -1.684 19.204 19.363 Atomic orbital electron populations 1.21723 0.96036 1.01310 1.01429 1.21155 0.95702 0.93976 1.01897 1.21858 0.95622 0.96252 0.93591 1.21889 1.00327 0.93805 0.89653 1.60485 1.16570 1.53031 1.01547 1.22113 1.00135 0.95572 0.89103 1.21610 0.99264 0.99319 0.94210 1.19069 0.96517 0.95696 0.90331 1.21268 1.32042 1.11293 0.91035 0.92684 1.25032 0.95290 0.95148 0.99075 1.69968 1.38105 1.24052 1.21547 0.86596 0.79294 0.79815 0.82312 1.20663 1.21274 1.19884 1.23030 0.97582 0.99826 0.96798 1.22810 0.97342 1.01081 0.96530 1.22992 0.96295 1.01918 0.96103 0.92142 0.93163 0.93547 0.90210 0.92989 0.95828 0.91189 0.84719 0.91654 0.96041 0.93760 0.92605 0.96620 0.96861 0.93068 0.90460 0.91421 0.90387 0.91931 0.91399 0.90525 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.57 9.60 37.16 0.36 -1.22 16 2 C -0.09 -0.97 5.14 -26.73 -0.14 -1.11 16 3 C -0.07 -0.77 0.67 -153.70 -0.10 -0.87 16 4 C 0.07 0.92 4.67 -3.83 -0.02 0.90 16 5 N -0.69 -10.13 5.72 -113.78 -0.65 -10.78 16 6 C 0.06 1.06 5.68 -3.82 -0.02 1.03 16 7 C -0.11 -2.25 5.41 -26.73 -0.14 -2.40 16 8 C 0.02 0.57 4.97 -27.88 -0.14 0.43 16 9 C -0.52 -15.03 9.11 -34.44 -0.31 -15.35 16 10 H 0.05 1.55 7.74 -52.49 -0.41 1.15 16 11 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 12 N -0.90 -27.46 13.29 55.43 0.74 -26.73 16 13 Si 0.89 22.02 29.54 -169.99 -5.02 17.00 16 14 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 15 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 16 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 17 C -0.13 -1.25 7.08 -25.83 -0.18 -1.43 16 18 C -0.14 -1.22 7.74 -25.83 -0.20 -1.42 16 19 C -0.14 -1.33 7.04 -25.92 -0.18 -1.51 16 20 H 0.06 0.73 6.74 -51.93 -0.35 0.38 16 21 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 22 H 0.05 0.44 6.97 -51.93 -0.36 0.08 16 23 H 0.08 1.00 7.61 -51.93 -0.39 0.60 16 24 H 0.05 0.51 7.31 -51.93 -0.38 0.13 16 25 H 0.02 0.30 8.09 -51.93 -0.42 -0.12 16 26 H 0.07 0.92 6.98 -51.93 -0.36 0.56 16 27 H 0.34 4.75 8.61 -39.29 -0.34 4.41 16 28 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 29 H 0.02 0.39 8.14 -51.93 -0.42 -0.04 16 30 H 0.04 0.92 8.14 -51.93 -0.42 0.50 16 31 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 32 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.01 0.37 8.14 -51.93 -0.42 -0.06 16 34 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 35 H 0.08 0.71 8.10 -51.93 -0.42 0.29 16 36 H 0.07 0.60 6.89 -51.93 -0.36 0.24 16 37 H 0.08 0.64 7.61 -51.93 -0.39 0.25 16 38 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 39 H 0.07 0.67 8.10 -51.92 -0.42 0.25 16 40 H 0.08 0.76 8.06 -51.93 -0.42 0.34 16 LS Contribution 314.69 15.07 4.74 4.74 Total: -1.00 -29.65 314.69 -8.92 -38.58 By element: Atomic # 1 Polarization: 6.16 SS G_CDS: -7.54 Total: -1.39 kcal Atomic # 6 Polarization: -20.24 SS G_CDS: -1.18 Total: -21.42 kcal Atomic # 7 Polarization: -37.59 SS G_CDS: 0.09 Total: -37.51 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.02 Total: 17.00 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -29.65 -8.92 -38.58 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000232953221.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.986 kcal (2) G-P(sol) polarization free energy of solvation -29.655 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.669 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.920 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.575 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.589 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds