Wall clock time and date at job start Mon Mar 30 2020 03:30:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53002 * 109.47135 * 2 1 4 4 C 1.52995 * 109.47135 * 179.97438 * 3 2 1 5 5 C 1.53000 * 109.47306 * 54.03654 * 4 3 2 6 6 C 1.53001 * 109.47313 * 300.00146 * 3 2 1 7 7 C 1.50705 * 109.46980 * 306.50440 * 6 3 2 8 8 H 1.07999 * 120.00078 * 5.64008 * 7 6 3 9 9 C 1.37877 * 119.99934 * 185.63764 * 7 6 3 10 10 N 1.31516 * 119.99909 * 359.72356 * 9 7 6 11 11 Si 1.86794 * 119.99968 * 180.02562 * 9 7 6 12 12 H 1.48498 * 109.47135 * 179.72624 * 11 9 7 13 13 H 1.48498 * 109.47258 * 299.72414 * 11 9 7 14 14 H 1.48497 * 109.47253 * 59.72302 * 11 9 7 15 15 C 1.53005 * 109.46893 * 60.00055 * 3 2 1 16 16 H 1.09002 * 110.62917 * 303.77331 * 15 3 2 17 17 C 1.55144 * 110.70520 * 66.87439 * 15 3 2 18 18 C 1.55111 * 101.55859 * 153.90507 * 17 15 3 19 19 N 1.47843 * 104.90606 * 323.15941 * 18 17 15 20 20 C 1.47439 * 108.56834 * 23.97182 * 19 18 17 21 21 H 1.08994 * 109.47400 * 59.99937 * 1 2 3 22 22 H 1.09003 * 109.47010 * 179.97438 * 1 2 3 23 23 H 1.09000 * 109.47302 * 299.99342 * 1 2 3 24 24 H 1.09009 * 109.47593 * 240.00103 * 2 1 3 25 25 H 1.09004 * 109.47536 * 120.00110 * 2 1 3 26 26 H 1.08996 * 109.47387 * 174.03688 * 4 3 2 27 27 H 1.09003 * 109.47449 * 294.03076 * 4 3 2 28 28 H 1.08994 * 109.47154 * 71.02618 * 5 4 3 29 29 H 1.09001 * 109.46910 * 191.03063 * 5 4 3 30 30 H 1.09000 * 109.47051 * 311.02603 * 5 4 3 31 31 H 1.08996 * 109.47275 * 186.50655 * 6 3 2 32 32 H 1.08997 * 109.46713 * 66.50185 * 6 3 2 33 33 H 0.96999 * 119.99956 * 0.28038 * 10 9 7 34 34 H 1.09002 * 110.98738 * 272.13046 * 17 15 3 35 35 H 1.09007 * 110.98791 * 35.94351 * 17 15 3 36 36 H 1.08994 * 110.42817 * 204.24047 * 18 17 15 37 37 H 1.09001 * 110.30673 * 82.01542 * 18 17 15 38 38 H 1.00903 * 111.00331 * 146.23619 * 19 18 17 39 39 H 1.08996 * 109.89184 * 239.60461 * 20 19 18 40 40 H 1.09004 * 109.89528 * 118.41338 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5699 1.4425 0.0006 5 6 4.0804 0.5952 -1.1665 6 6 1.5299 2.1638 -1.2492 7 6 1.8966 1.3666 -2.4744 8 1 2.3576 0.3956 -2.3689 9 6 1.6434 1.8767 -3.7301 10 7 1.0770 3.0567 -3.8585 11 14 2.0971 0.8883 -5.2487 12 1 1.7181 1.6493 -6.4662 13 1 3.5608 0.6378 -5.2573 14 1 1.3732 -0.4082 -5.2300 15 6 1.5299 2.1637 1.2493 16 1 0.4422 2.1170 1.3026 17 6 2.1681 1.5620 2.5290 18 6 2.1016 2.7658 3.5050 19 7 2.3682 3.9522 2.6642 20 6 2.0148 3.6286 1.2699 21 1 -0.3634 0.5138 -0.8899 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3634 0.5137 0.8900 24 1 1.8934 -0.5138 -0.8900 25 1 1.8934 -0.5139 0.8900 26 1 3.9333 2.4645 -0.1061 27 1 3.9329 1.0242 0.9395 28 1 3.8870 1.1150 -2.1048 29 1 5.1525 0.4324 -1.0557 30 1 3.5656 -0.3655 -1.1706 31 1 1.9852 3.1523 -1.3093 32 1 0.4462 2.2657 -1.1928 33 1 0.8411 3.5698 -3.0699 34 1 1.5811 0.7219 2.9001 35 1 3.2010 1.2647 2.3474 36 1 2.8629 2.6704 4.2791 37 1 1.1109 2.8341 3.9544 38 1 1.8484 4.7523 2.9925 39 1 2.8906 3.7383 0.6303 40 1 1.2175 4.2879 0.9267 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238206079.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:30:21 Heat of formation + Delta-G solvation = -30.572522 kcal Electronic energy + Delta-G solvation = -17212.494661 eV Core-core repulsion = 14832.744303 eV Total energy + Delta-G solvation = -2379.750358 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.00249 -37.67099 -34.67538 -32.56052 -30.99194 -30.46357 -28.86810 -26.43537 -24.62254 -23.51397 -22.36567 -22.01042 -18.95425 -18.27382 -17.62263 -16.69218 -16.01726 -15.59734 -15.42343 -15.16762 -14.55217 -14.14044 -13.94966 -13.55759 -13.45917 -13.16237 -12.89547 -12.82532 -12.49002 -12.37157 -12.31421 -12.18549 -12.00569 -11.83594 -11.72122 -11.38897 -11.06810 -10.89716 -10.56124 -10.32555 -10.15373 -9.36348 -8.44840 -6.08959 1.54143 1.61620 1.78251 2.64126 3.32629 3.34122 3.72111 3.81105 3.94655 4.21600 4.25794 4.33560 4.47856 4.50137 4.58573 4.66034 4.73560 4.81816 4.92937 4.96342 4.99907 5.05159 5.06982 5.15156 5.18686 5.26217 5.33150 5.45628 5.47688 5.50469 5.61984 5.72925 5.81461 5.88805 5.93123 6.27970 6.43814 6.46977 6.80650 7.64398 8.92686 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.034373 B = 0.008756 C = 0.008421 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 814.400799 B = 3196.899362 C = 3324.030261 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.100 4.100 3 C -0.029 4.029 4 C -0.094 4.094 5 C -0.159 4.159 6 C 0.032 3.968 7 C -0.576 4.576 8 H 0.080 0.920 9 C -0.049 4.049 10 N -0.954 5.954 11 Si 1.100 2.900 12 H -0.295 1.295 13 H -0.269 1.269 14 H -0.271 1.271 15 C -0.097 4.097 16 H 0.064 0.936 17 C -0.124 4.124 18 C 0.046 3.954 19 N -0.691 5.691 20 C 0.053 3.947 21 H 0.030 0.970 22 H 0.057 0.943 23 H 0.054 0.946 24 H 0.059 0.941 25 H 0.066 0.934 26 H 0.035 0.965 27 H 0.069 0.931 28 H 0.065 0.935 29 H 0.041 0.959 30 H 0.055 0.945 31 H -0.023 1.023 32 H -0.022 1.022 33 H 0.251 0.749 34 H 0.085 0.915 35 H 0.080 0.920 36 H 0.088 0.912 37 H 0.050 0.950 38 H 0.343 0.657 39 H 0.058 0.942 40 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.060 -4.990 13.035 14.109 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.137 4.137 3 C -0.030 4.030 4 C -0.131 4.131 5 C -0.215 4.215 6 C -0.005 4.005 7 C -0.614 4.614 8 H 0.098 0.902 9 C -0.245 4.245 10 N -0.594 5.594 11 Si 0.924 3.076 12 H -0.221 1.221 13 H -0.194 1.194 14 H -0.197 1.197 15 C -0.116 4.116 16 H 0.082 0.918 17 C -0.161 4.161 18 C -0.082 4.082 19 N -0.320 5.320 20 C -0.076 4.076 21 H 0.049 0.951 22 H 0.076 0.924 23 H 0.073 0.927 24 H 0.078 0.922 25 H 0.084 0.916 26 H 0.054 0.946 27 H 0.087 0.913 28 H 0.083 0.917 29 H 0.060 0.940 30 H 0.074 0.926 31 H -0.004 1.004 32 H -0.004 1.004 33 H 0.060 0.940 34 H 0.103 0.897 35 H 0.098 0.902 36 H 0.106 0.894 37 H 0.069 0.931 38 H 0.159 0.841 39 H 0.076 0.924 40 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges 2.738 -5.093 11.328 12.718 hybrid contribution -1.297 0.679 1.212 1.900 sum 1.441 -4.414 12.539 13.371 Atomic orbital electron populations 1.21731 0.96766 1.00889 1.00601 1.21504 0.95390 0.95698 1.01118 1.20280 0.94738 0.95120 0.92845 1.21446 0.94729 0.98771 0.98134 1.22307 0.98432 1.00210 1.00590 1.19157 0.93180 0.94119 0.94062 1.22761 1.40630 1.05799 0.92168 0.90193 1.27032 0.95084 0.97583 1.04789 1.70902 1.42294 1.13580 1.32653 0.83137 0.77211 0.74498 0.72755 1.22103 1.19449 1.19680 1.22419 0.99182 0.94348 0.95678 0.91765 1.22931 1.01933 0.97685 0.93554 1.22924 1.00318 0.89165 0.95817 1.61867 1.60977 1.07401 1.01783 1.22571 0.98584 0.95844 0.90574 0.95072 0.92365 0.92701 0.92234 0.91567 0.94597 0.91256 0.91671 0.93996 0.92593 1.00425 1.00352 0.93984 0.89675 0.90205 0.89352 0.93123 0.84117 0.92369 0.94908 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.89 9.23 71.98 0.66 -4.22 16 2 C -0.10 -3.48 4.02 30.59 0.12 -3.35 16 3 C -0.03 -1.11 0.09 -52.18 0.00 -1.11 16 4 C -0.09 -3.42 4.42 30.59 0.14 -3.28 16 5 C -0.16 -6.00 8.15 71.98 0.59 -5.42 16 6 C 0.03 1.56 2.49 29.85 0.07 1.63 16 7 C -0.58 -30.35 5.84 25.60 0.15 -30.20 16 8 H 0.08 3.98 3.76 -2.91 -0.01 3.97 16 9 C -0.05 -2.80 5.46 84.65 0.46 -2.34 16 10 N -0.95 -59.60 13.65 21.45 0.29 -59.30 16 11 Si 1.10 50.45 29.90 68.60 2.05 52.50 16 12 H -0.29 -13.94 7.11 99.48 0.71 -13.24 16 13 H -0.27 -11.41 7.11 99.48 0.71 -10.70 16 14 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 15 C -0.10 -3.15 2.00 -9.61 -0.02 -3.17 16 16 H 0.06 2.16 6.32 -2.39 -0.02 2.14 16 17 C -0.12 -3.15 5.58 32.05 0.18 -2.97 16 18 C 0.05 1.06 7.57 86.85 0.66 1.72 16 19 N -0.69 -19.00 7.39 -504.07 -3.73 -22.73 16 20 C 0.05 1.81 6.09 86.65 0.53 2.34 16 21 H 0.03 1.28 6.57 -2.39 -0.02 1.27 16 22 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 23 H 0.05 1.69 6.36 -2.39 -0.02 1.67 16 24 H 0.06 2.29 4.59 -2.38 -0.01 2.28 16 25 H 0.07 1.94 7.50 -2.39 -0.02 1.92 16 26 H 0.04 1.42 6.39 -2.39 -0.02 1.41 16 27 H 0.07 2.17 5.67 -2.39 -0.01 2.16 16 28 H 0.06 2.95 5.34 -2.39 -0.01 2.94 16 29 H 0.04 1.37 8.14 -2.39 -0.02 1.35 16 30 H 0.06 2.03 5.32 -2.39 -0.01 2.02 16 31 H -0.02 -1.24 6.88 -2.39 -0.02 -1.26 16 32 H -0.02 -1.17 6.79 -2.39 -0.02 -1.19 16 33 H 0.25 15.97 7.18 -92.71 -0.67 15.30 16 34 H 0.08 1.88 8.13 -2.39 -0.02 1.86 16 35 H 0.08 2.10 5.47 -2.38 -0.01 2.08 16 36 H 0.09 1.78 8.14 -2.39 -0.02 1.76 16 37 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 38 H 0.34 8.12 8.91 -89.69 -0.80 7.32 16 39 H 0.06 2.27 5.52 -2.39 -0.01 2.26 16 40 H 0.03 1.15 8.14 -2.39 -0.02 1.13 16 Total: -1.00 -62.07 280.62 2.49 -59.57 By element: Atomic # 1 Polarization: 19.99 SS G_CDS: 0.34 Total: 20.33 kcal Atomic # 6 Polarization: -53.91 SS G_CDS: 3.54 Total: -50.38 kcal Atomic # 7 Polarization: -78.60 SS G_CDS: -3.43 Total: -82.03 kcal Atomic # 14 Polarization: 50.45 SS G_CDS: 2.05 Total: 52.50 kcal Total: -62.07 2.49 -59.57 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238206079.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.002 kcal (2) G-P(sol) polarization free energy of solvation -62.068 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.066 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.494 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.575 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.573 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds