Wall clock time and date at job start Mon Mar 30 2020 04:08:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52999 * 109.47367 * 2 1 4 4 C 1.52997 * 109.47685 * 180.02562 * 3 2 1 5 5 C 1.52999 * 109.47685 * 179.97438 * 4 3 2 6 6 N 1.46895 * 109.47142 * 180.02562 * 5 4 3 7 7 C 1.46847 * 110.99982 * 293.95107 * 6 5 4 8 8 C 1.53034 * 109.51345 * 185.84805 * 7 6 5 9 9 C 1.53123 * 109.27992 * 300.80438 * 8 7 6 10 10 C 1.53127 * 109.15019 * 57.67185 * 9 8 7 11 11 C 1.46843 * 110.99970 * 58.16472 * 6 5 4 12 12 H 1.08993 * 109.46313 * 294.17341 * 11 6 5 13 13 C 1.50703 * 109.46281 * 54.15698 * 11 6 5 14 14 H 1.07990 * 120.00098 * 359.97438 * 13 11 6 15 15 C 1.37877 * 119.99504 * 180.02562 * 13 11 6 16 16 N 1.31516 * 120.00512 * 359.97438 * 15 13 11 17 17 Si 1.86803 * 119.99450 * 179.97438 * 15 13 11 18 18 H 1.48501 * 109.47328 * 60.00035 * 17 15 13 19 19 H 1.48504 * 109.46851 * 179.97438 * 17 15 13 20 20 H 1.48492 * 109.47263 * 299.99763 * 17 15 13 21 21 H 1.08998 * 109.47476 * 179.97438 * 1 2 3 22 22 H 1.09006 * 109.46931 * 300.00129 * 1 2 3 23 23 H 1.09000 * 109.47668 * 59.99766 * 1 2 3 24 24 H 1.09006 * 109.47147 * 240.00379 * 2 1 3 25 25 H 1.09003 * 109.47403 * 119.99775 * 2 1 3 26 26 H 1.09006 * 109.47200 * 60.00035 * 3 2 1 27 27 H 1.09006 * 109.47333 * 300.00552 * 3 2 1 28 28 H 1.09006 * 109.46888 * 59.99703 * 4 3 2 29 29 H 1.09006 * 109.47071 * 300.00571 * 4 3 2 30 30 H 1.09006 * 109.46677 * 59.99951 * 5 4 3 31 31 H 1.09000 * 109.46917 * 300.00552 * 5 4 3 32 32 H 1.09002 * 109.46481 * 305.85957 * 7 6 5 33 33 H 1.08994 * 109.46283 * 65.83811 * 7 6 5 34 34 H 1.08997 * 109.50952 * 60.75924 * 8 7 6 35 35 H 1.08998 * 109.50459 * 180.87821 * 8 7 6 36 36 H 1.09003 * 109.53012 * 297.76758 * 9 8 7 37 37 H 1.08998 * 109.52498 * 177.57076 * 9 8 7 38 38 H 1.08997 * 109.49981 * 182.39822 * 10 9 8 39 39 H 1.08998 * 109.53089 * 62.30397 * 10 9 8 40 40 H 0.96999 * 119.99973 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 6 4.0800 2.8850 -0.0013 6 7 5.5490 2.8850 -0.0025 7 6 6.0762 2.3286 1.2500 8 6 7.5991 2.4779 1.2745 9 6 8.1988 1.7400 0.0743 10 6 7.5971 2.3057 -1.2151 11 6 6.0742 2.1616 -1.1675 12 1 5.8115 1.1068 -1.0888 13 6 5.4763 2.7355 -2.4263 14 1 4.7759 3.5552 -2.3663 15 6 5.8228 2.2131 -3.6543 16 7 6.6755 1.2144 -3.7272 17 14 5.0812 2.9239 -5.2145 18 1 5.4386 4.3612 -5.3222 19 1 5.6124 2.1926 -6.3928 20 1 3.6037 2.7833 -5.1688 21 1 -0.3634 -1.0276 -0.0005 22 1 -0.3633 0.5139 0.8900 23 1 -0.3634 0.5138 -0.8899 24 1 1.8933 -0.5138 -0.8901 25 1 1.8933 -0.5138 0.8900 26 1 1.6767 1.9563 0.8900 27 1 1.6766 1.9564 -0.8900 28 1 3.9329 0.9288 -0.8909 29 1 3.9337 0.9285 0.8891 30 1 3.7170 3.3991 0.8888 31 1 3.7162 3.3986 -0.8912 32 1 5.6451 2.8647 2.0955 33 1 5.8137 1.2729 1.3174 34 1 7.8622 3.5342 1.2210 35 1 7.9918 2.0508 2.1973 36 1 7.9688 0.6770 0.1480 37 1 9.2798 1.8798 0.0638 38 1 7.9882 1.7557 -2.0710 39 1 7.8603 3.3593 -1.3084 40 1 6.9195 0.8472 -4.5912 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259269888.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:08:30 Heat of formation + Delta-G solvation = -44.674661 kcal Electronic energy + Delta-G solvation = -16583.528965 eV Core-core repulsion = 14203.167093 eV Total energy + Delta-G solvation = -2380.361872 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.07145 -36.79109 -34.87806 -34.39518 -31.27650 -30.95012 -27.37794 -26.55067 -24.15889 -23.31414 -22.04309 -21.94245 -19.94140 -18.23323 -16.99767 -16.55392 -16.17439 -15.55804 -15.10480 -14.91354 -14.81133 -14.43693 -14.09620 -13.81055 -13.60422 -13.34859 -12.82909 -12.63590 -12.60529 -12.48543 -12.29035 -11.99562 -11.90046 -11.80247 -11.74889 -11.56255 -11.37331 -11.17531 -10.93745 -10.61662 -10.36813 -8.74824 -8.07306 -6.17810 1.40654 1.42078 1.49199 2.42981 3.19589 3.48804 3.94709 4.03487 4.16728 4.23180 4.27680 4.31063 4.40494 4.64538 4.69104 4.69927 4.78973 4.84302 4.90585 4.92464 4.99786 5.06583 5.11155 5.14164 5.20793 5.26570 5.28925 5.35965 5.41762 5.49904 5.52934 5.57936 5.68768 5.82384 5.87250 6.34341 6.51594 6.86759 6.98497 7.50533 8.97587 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.015819 B = 0.011425 C = 0.007381 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1769.597551 B = 2450.281246 C = 3792.401179 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.125 4.125 3 C -0.106 4.106 4 C -0.141 4.141 5 C 0.069 3.931 6 N -0.547 5.547 7 C 0.054 3.946 8 C -0.106 4.106 9 C -0.118 4.118 10 C -0.104 4.104 11 C 0.228 3.772 12 H -0.032 1.032 13 C -0.514 4.514 14 H 0.055 0.945 15 C 0.013 3.987 16 N -0.919 5.919 17 Si 0.951 3.049 18 H -0.273 1.273 19 H -0.285 1.285 20 H -0.272 1.272 21 H 0.060 0.940 22 H 0.064 0.936 23 H 0.050 0.950 24 H 0.041 0.959 25 H 0.062 0.938 26 H 0.075 0.925 27 H 0.051 0.949 28 H 0.034 0.966 29 H 0.053 0.947 30 H 0.076 0.924 31 H 0.058 0.942 32 H 0.082 0.918 33 H 0.016 0.984 34 H 0.063 0.937 35 H 0.083 0.917 36 H 0.039 0.961 37 H 0.062 0.938 38 H 0.060 0.940 39 H 0.028 0.972 40 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.085 -0.191 9.373 11.177 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.163 4.163 3 C -0.144 4.144 4 C -0.180 4.180 5 C -0.059 4.059 6 N -0.271 5.271 7 C -0.074 4.074 8 C -0.144 4.144 9 C -0.155 4.155 10 C -0.143 4.143 11 C 0.121 3.879 12 H -0.014 1.014 13 C -0.552 4.552 14 H 0.073 0.927 15 C -0.186 4.186 16 N -0.560 5.560 17 Si 0.777 3.223 18 H -0.198 1.198 19 H -0.211 1.211 20 H -0.198 1.198 21 H 0.079 0.921 22 H 0.083 0.917 23 H 0.070 0.930 24 H 0.060 0.940 25 H 0.081 0.919 26 H 0.094 0.906 27 H 0.070 0.930 28 H 0.053 0.947 29 H 0.071 0.929 30 H 0.094 0.906 31 H 0.076 0.924 32 H 0.101 0.899 33 H 0.034 0.966 34 H 0.082 0.918 35 H 0.102 0.898 36 H 0.058 0.942 37 H 0.081 0.919 38 H 0.078 0.922 39 H 0.047 0.953 40 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -5.824 0.193 9.208 10.897 hybrid contribution -0.309 -0.766 -1.294 1.535 sum -6.133 -0.573 7.914 10.029 Atomic orbital electron populations 1.21737 0.94416 1.02053 1.02117 1.21528 0.96969 0.96569 1.01218 1.21473 0.93916 0.97119 1.01919 1.22041 0.96815 0.98954 1.00222 1.22018 0.87515 0.95195 1.01157 1.62178 1.07249 1.55044 1.02589 1.22103 0.95961 0.96719 0.92649 1.21539 0.94438 1.00704 0.97696 1.21610 0.99487 0.98555 0.95872 1.21502 0.97358 0.98405 0.96995 1.18922 0.91765 0.89845 0.87343 1.01409 1.21430 1.25301 1.16993 0.91510 0.92650 1.25639 0.95703 0.95435 1.01794 1.70017 1.34611 1.26120 1.25205 0.85721 0.78822 0.78570 0.79201 1.19816 1.21100 1.19766 0.92063 0.91672 0.93041 0.93973 0.91889 0.90599 0.92998 0.94723 0.92858 0.90586 0.92380 0.89943 0.96612 0.91821 0.89812 0.94190 0.91925 0.92158 0.95285 0.93179 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.13 9.91 71.98 0.71 -2.41 16 2 C -0.13 -3.37 5.93 30.59 0.18 -3.19 16 3 C -0.11 -3.16 5.21 30.59 0.16 -3.00 16 4 C -0.14 -5.22 4.51 30.59 0.14 -5.09 16 5 C 0.07 2.69 4.94 86.30 0.43 3.11 16 6 N -0.55 -23.64 4.69 -875.53 -4.10 -27.74 16 7 C 0.05 1.92 5.05 86.32 0.44 2.36 16 8 C -0.11 -3.55 6.09 30.65 0.19 -3.36 16 9 C -0.12 -4.65 6.00 30.68 0.18 -4.46 16 10 C -0.10 -5.16 5.14 30.65 0.16 -5.00 16 11 C 0.23 11.70 1.23 44.20 0.05 11.76 16 12 H -0.03 -1.81 6.61 -2.39 -0.02 -1.82 16 13 C -0.51 -28.61 7.83 25.60 0.20 -28.41 16 14 H 0.06 3.08 6.26 -2.92 -0.02 3.06 16 15 C 0.01 0.71 5.30 84.65 0.45 1.16 16 16 N -0.92 -53.80 11.33 21.45 0.24 -53.56 16 17 Si 0.95 44.51 29.54 68.60 2.03 46.53 16 18 H -0.27 -12.50 7.11 99.48 0.71 -11.80 16 19 H -0.29 -13.13 7.11 99.48 0.71 -12.42 16 20 H -0.27 -12.40 7.11 99.48 0.71 -11.69 16 21 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 22 H 0.06 1.22 8.14 -2.38 -0.02 1.20 16 23 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 24 H 0.04 1.28 8.14 -2.38 -0.02 1.26 16 25 H 0.06 1.59 8.14 -2.39 -0.02 1.58 16 26 H 0.08 1.92 8.14 -2.38 -0.02 1.90 16 27 H 0.05 1.63 8.14 -2.38 -0.02 1.61 16 28 H 0.03 1.58 6.41 -2.38 -0.02 1.57 16 29 H 0.05 1.87 6.68 -2.38 -0.02 1.86 16 30 H 0.08 2.48 8.06 -2.38 -0.02 2.47 16 31 H 0.06 2.49 6.20 -2.39 -0.01 2.48 16 32 H 0.08 2.50 8.06 -2.39 -0.02 2.48 16 33 H 0.02 0.58 6.76 -2.39 -0.02 0.57 16 34 H 0.06 2.13 8.14 -2.39 -0.02 2.11 16 35 H 0.08 2.24 8.14 -2.39 -0.02 2.22 16 36 H 0.04 1.61 8.14 -2.39 -0.02 1.59 16 37 H 0.06 2.21 8.14 -2.39 -0.02 2.19 16 38 H 0.06 3.36 6.09 -2.39 -0.01 3.34 16 39 H 0.03 1.46 8.14 -2.39 -0.02 1.44 16 40 H 0.26 14.52 8.31 -92.71 -0.77 13.75 16 Total: -1.00 -60.56 301.17 2.42 -58.14 By element: Atomic # 1 Polarization: 12.21 SS G_CDS: 0.97 Total: 13.17 kcal Atomic # 6 Polarization: -39.83 SS G_CDS: 3.29 Total: -36.54 kcal Atomic # 7 Polarization: -77.44 SS G_CDS: -3.86 Total: -81.30 kcal Atomic # 14 Polarization: 44.51 SS G_CDS: 2.03 Total: 46.53 kcal Total: -60.56 2.42 -58.14 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259269888.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.464 kcal (2) G-P(sol) polarization free energy of solvation -60.561 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.097 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.422 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.139 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.675 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds