Wall clock time and date at job start Mon Mar 30 2020 03:37:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53003 * 109.47128 * 2 1 4 4 C 1.53000 * 109.46986 * 119.99364 * 2 1 3 5 5 C 1.53004 * 109.46752 * 64.99994 * 4 2 1 6 6 C 1.53004 * 109.47077 * 179.97438 * 5 4 2 7 7 H 1.08998 * 109.52480 * 304.87886 * 6 5 4 8 8 C 1.53129 * 109.51834 * 65.00202 * 6 5 4 9 9 C 1.53039 * 109.27430 * 177.55827 * 8 6 5 10 10 N 1.46844 * 109.52472 * 300.82171 * 9 8 6 11 11 C 1.46849 * 111.19736 * 61.74298 * 10 9 8 12 12 H 1.08997 * 109.46265 * 58.26740 * 11 10 9 13 13 C 1.50706 * 109.45750 * 178.24175 * 11 10 9 14 14 H 1.07998 * 119.99503 * 120.00313 * 13 11 10 15 15 C 1.37871 * 120.00434 * 299.99777 * 13 11 10 16 16 N 1.31516 * 119.99826 * 359.72891 * 15 13 11 17 17 Si 1.86800 * 120.00406 * 180.02562 * 15 13 11 18 18 H 1.48501 * 109.46758 * 269.72576 * 17 15 13 19 19 H 1.48499 * 109.47026 * 29.72423 * 17 15 13 20 20 H 1.48496 * 109.47474 * 149.72459 * 17 15 13 21 21 C 1.53036 * 109.52580 * 298.25669 * 11 10 9 22 22 H 1.09007 * 109.47345 * 300.00786 * 1 2 3 23 23 H 1.09007 * 109.47073 * 60.00224 * 1 2 3 24 24 H 1.08994 * 109.47653 * 180.02562 * 1 2 3 25 25 H 1.08996 * 109.47182 * 239.99630 * 2 1 3 26 26 H 1.08994 * 109.47218 * 179.97438 * 3 2 1 27 27 H 1.09007 * 109.46960 * 299.99845 * 3 2 1 28 28 H 1.08996 * 109.47391 * 59.99758 * 3 2 1 29 29 H 1.08996 * 109.47315 * 305.00499 * 4 2 1 30 30 H 1.08998 * 109.47265 * 184.99933 * 4 2 1 31 31 H 1.08996 * 109.46798 * 60.00189 * 5 4 2 32 32 H 1.08998 * 109.47186 * 299.99988 * 5 4 2 33 33 H 1.08998 * 109.50061 * 57.62110 * 8 6 5 34 34 H 1.08999 * 109.53389 * 297.51997 * 8 6 5 35 35 H 1.09000 * 109.45907 * 180.80517 * 9 8 6 36 36 H 1.08995 * 109.45585 * 60.83325 * 9 8 6 37 37 H 1.00906 * 111.00149 * 297.64529 * 10 9 8 38 38 H 0.97000 * 120.00236 * 0.27947 * 16 15 13 39 39 H 1.08995 * 109.50474 * 179.12074 * 21 11 10 40 40 H 1.08997 * 109.50294 * 299.24059 * 21 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7211 1.2493 5 6 1.6351 -2.1954 1.1881 6 6 2.1456 -2.9167 2.4371 7 1 3.2213 -2.7671 2.5301 8 6 1.4419 -2.3551 3.6758 9 6 1.9114 -3.1215 4.9145 10 7 1.5993 -4.5477 4.7566 11 6 2.3015 -5.1201 3.6009 12 1 3.3759 -4.9853 3.7253 13 6 1.9882 -6.5909 3.5011 14 1 1.5098 -6.9821 2.6154 15 6 2.3124 -7.4369 4.5404 16 7 2.8999 -6.9612 5.6166 17 14 1.9248 -9.2600 4.4164 18 1 0.5695 -9.5163 4.9666 19 1 1.9686 -9.6797 2.9926 20 1 2.9280 -10.0332 5.1915 21 6 1.8437 -4.4134 2.3229 22 1 -0.3634 0.5140 0.8900 23 1 -0.3633 0.5138 -0.8901 24 1 -0.3634 -1.0276 0.0005 25 1 1.8933 -0.5139 -0.8899 26 1 3.1299 1.4425 0.0005 27 1 1.6766 1.9564 -0.8901 28 1 1.6767 1.9564 0.8899 29 1 1.6053 -0.2616 2.1370 30 1 3.1262 -0.6442 1.2953 31 1 2.0698 -2.6549 0.3005 32 1 0.5488 -2.2722 1.1422 33 1 0.3636 -2.4687 3.5646 34 1 1.6871 -1.2988 3.7867 35 1 1.4015 -2.7336 5.7964 36 1 2.9876 -2.9962 5.0327 37 1 0.6036 -4.6941 4.6837 38 1 3.1014 -6.0146 5.6809 39 1 2.3765 -4.8279 1.4671 40 1 0.7717 -4.5594 2.1904 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259723117.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:37:57 Heat of formation + Delta-G solvation = -63.771309 kcal Electronic energy + Delta-G solvation = -16159.593700 eV Core-core repulsion = 13778.403734 eV Total energy + Delta-G solvation = -2381.189965 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.11796 -37.71216 -35.13197 -33.60524 -31.55295 -29.52834 -28.01247 -26.76604 -24.83017 -23.47180 -22.23735 -20.96133 -20.72589 -18.84317 -16.67493 -15.98380 -15.62203 -15.53588 -15.45657 -15.24421 -14.93541 -14.78590 -14.32894 -13.59500 -13.32192 -13.16332 -13.05791 -12.77764 -12.61110 -12.46108 -12.32470 -12.10312 -11.94000 -11.85816 -11.71975 -11.45125 -11.33656 -11.27532 -11.11186 -10.45385 -10.37947 -8.93208 -8.31265 -6.22563 1.56217 1.65171 1.82080 2.64955 3.29941 3.68880 3.80621 3.85087 3.99645 4.05694 4.17830 4.24616 4.42661 4.45681 4.59431 4.62859 4.70648 4.77961 4.80220 4.82673 4.88081 4.95457 5.01032 5.03747 5.09536 5.14802 5.19433 5.25828 5.30314 5.31284 5.40320 5.48698 5.55118 5.59671 6.01396 6.26253 6.70735 6.83353 6.97236 7.70133 8.99084 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.052006 B = 0.005443 C = 0.005166 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 538.267119 B = 5143.307374 C = 5418.600178 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.097 4.097 3 C -0.145 4.145 4 C -0.109 4.109 5 C -0.104 4.104 6 C -0.082 4.082 7 H 0.050 0.950 8 C -0.134 4.134 9 C 0.052 3.948 10 N -0.688 5.688 11 C 0.206 3.794 12 H -0.011 1.011 13 C -0.629 4.629 14 H 0.038 0.962 15 C -0.013 4.013 16 N -0.921 5.921 17 Si 1.113 2.887 18 H -0.276 1.276 19 H -0.277 1.277 20 H -0.286 1.286 21 C -0.120 4.120 22 H 0.055 0.945 23 H 0.060 0.940 24 H 0.049 0.951 25 H 0.064 0.936 26 H 0.053 0.947 27 H 0.061 0.939 28 H 0.055 0.945 29 H 0.066 0.934 30 H 0.056 0.944 31 H 0.053 0.947 32 H 0.063 0.937 33 H 0.058 0.942 34 H 0.081 0.919 35 H 0.072 0.928 36 H 0.046 0.954 37 H 0.326 0.674 38 H 0.277 0.723 39 H 0.041 0.959 40 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.111 14.677 -9.404 17.910 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.116 4.116 3 C -0.202 4.202 4 C -0.146 4.146 5 C -0.141 4.141 6 C -0.101 4.101 7 H 0.069 0.931 8 C -0.173 4.173 9 C -0.078 4.078 10 N -0.317 5.317 11 C 0.098 3.902 12 H 0.007 0.993 13 C -0.668 4.668 14 H 0.056 0.944 15 C -0.217 4.217 16 N -0.557 5.557 17 Si 0.936 3.064 18 H -0.202 1.202 19 H -0.202 1.202 20 H -0.212 1.212 21 C -0.159 4.159 22 H 0.074 0.926 23 H 0.079 0.921 24 H 0.068 0.932 25 H 0.083 0.917 26 H 0.072 0.928 27 H 0.080 0.920 28 H 0.074 0.926 29 H 0.084 0.916 30 H 0.075 0.925 31 H 0.072 0.928 32 H 0.081 0.919 33 H 0.077 0.923 34 H 0.099 0.901 35 H 0.091 0.909 36 H 0.064 0.936 37 H 0.143 0.857 38 H 0.088 0.912 39 H 0.060 0.940 40 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -3.494 13.065 -8.129 15.779 hybrid contribution -0.375 1.591 -1.400 2.152 sum -3.869 14.656 -9.529 17.904 Atomic orbital electron populations 1.21880 0.95066 1.01607 1.01951 1.21122 0.96157 0.96535 0.97762 1.21822 1.00925 0.95374 1.02081 1.21645 1.00483 0.94145 0.98365 1.21593 1.00782 0.95538 0.96216 1.21175 0.99040 0.94003 0.95854 0.93102 1.22210 0.99756 1.00248 0.95067 1.22050 0.99841 0.88609 0.97282 1.60878 1.12645 1.12979 1.45197 1.19040 0.91992 0.93195 0.85961 0.99294 1.22255 1.45789 0.93808 1.04944 0.94361 1.27009 0.93052 1.09353 0.92245 1.70645 1.38009 1.18234 1.28801 0.82994 0.76746 0.70681 0.75934 1.20213 1.20207 1.21175 1.22060 0.99676 0.95268 0.98942 0.92628 0.92077 0.93163 0.91707 0.92761 0.92013 0.92558 0.91567 0.92508 0.92800 0.91878 0.92326 0.90095 0.90920 0.93567 0.85704 0.91191 0.94040 0.93630 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.60 8.95 71.98 0.64 -1.96 16 2 C -0.10 -1.80 2.92 -10.79 -0.03 -1.83 16 3 C -0.14 -2.27 9.19 71.98 0.66 -1.61 16 4 C -0.11 -2.38 4.44 30.60 0.14 -2.24 16 5 C -0.10 -2.77 4.44 30.60 0.14 -2.63 16 6 C -0.08 -2.74 2.26 -10.71 -0.02 -2.77 16 7 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 8 C -0.13 -4.16 5.05 30.65 0.15 -4.00 16 9 C 0.05 1.97 6.55 86.33 0.57 2.53 16 10 N -0.69 -32.62 5.07 -495.56 -2.51 -35.13 16 11 C 0.21 10.59 1.90 44.19 0.08 10.67 16 12 H -0.01 -0.63 8.00 -2.39 -0.02 -0.65 16 13 C -0.63 -36.28 8.70 25.60 0.22 -36.06 16 14 H 0.04 2.20 7.74 -2.91 -0.02 2.17 16 15 C -0.01 -0.78 5.39 84.65 0.46 -0.32 16 16 N -0.92 -57.64 13.51 21.45 0.29 -57.35 16 17 Si 1.11 51.64 29.90 68.60 2.05 53.69 16 18 H -0.28 -12.14 7.11 99.48 0.71 -11.43 16 19 H -0.28 -12.02 7.11 99.48 0.71 -11.32 16 20 H -0.29 -13.17 7.11 99.48 0.71 -12.47 16 21 C -0.12 -5.05 4.58 30.64 0.14 -4.91 16 22 H 0.05 0.95 8.14 -2.38 -0.02 0.93 16 23 H 0.06 0.93 8.14 -2.38 -0.02 0.91 16 24 H 0.05 0.96 6.56 -2.39 -0.02 0.95 16 25 H 0.06 1.23 8.14 -2.39 -0.02 1.22 16 26 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 27 H 0.06 0.85 8.14 -2.38 -0.02 0.83 16 28 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 29 H 0.07 1.41 6.63 -2.39 -0.02 1.39 16 30 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 31 H 0.05 1.46 8.14 -2.39 -0.02 1.44 16 32 H 0.06 1.65 6.56 -2.39 -0.02 1.64 16 33 H 0.06 1.79 8.14 -2.39 -0.02 1.77 16 34 H 0.08 2.11 6.70 -2.39 -0.02 2.09 16 35 H 0.07 2.48 8.14 -2.39 -0.02 2.46 16 36 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 37 H 0.33 15.26 8.79 -89.69 -0.79 14.48 16 38 H 0.28 17.59 6.40 -92.71 -0.59 17.00 16 39 H 0.04 1.78 8.14 -2.39 -0.02 1.76 16 40 H 0.04 1.91 8.14 -2.39 -0.02 1.89 16 Total: -1.00 -63.69 305.55 3.34 -60.36 By element: Atomic # 1 Polarization: 23.20 SS G_CDS: 0.36 Total: 23.56 kcal Atomic # 6 Polarization: -48.27 SS G_CDS: 3.15 Total: -45.12 kcal Atomic # 7 Polarization: -90.26 SS G_CDS: -2.22 Total: -92.48 kcal Atomic # 14 Polarization: 51.64 SS G_CDS: 2.05 Total: 53.69 kcal Total: -63.69 3.34 -60.36 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259723117.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.416 kcal (2) G-P(sol) polarization free energy of solvation -63.691 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.107 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.336 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.356 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.771 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds