Wall clock time and date at job start Mon Mar 30 2020 04:02:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53003 * 109.47245 * 2 1 4 4 C 1.53001 * 109.46878 * 119.99936 * 2 1 3 5 5 C 1.53001 * 109.46975 * 175.00119 * 4 2 1 6 6 H 1.08997 * 109.47315 * 55.00184 * 5 4 2 7 7 C 1.50699 * 109.47030 * 175.00142 * 5 4 2 8 8 H 1.07999 * 120.00803 * 119.99828 * 7 5 4 9 9 C 1.37881 * 119.99889 * 299.99649 * 7 5 4 10 10 N 1.31520 * 120.00186 * 180.02562 * 9 7 5 11 11 Si 1.86798 * 120.00030 * 0.02562 * 9 7 5 12 12 H 1.48506 * 109.47297 * 89.99863 * 11 9 7 13 13 H 1.48503 * 109.47261 * 330.00044 * 11 9 7 14 14 H 1.48500 * 109.47454 * 210.00037 * 11 9 7 15 15 N 1.46900 * 109.46971 * 294.99505 * 5 4 2 16 16 C 1.46849 * 111.00313 * 299.21130 * 15 5 4 17 17 C 1.53036 * 109.52292 * 174.15781 * 16 15 5 18 18 C 1.53116 * 109.27508 * 59.18396 * 17 16 15 19 19 C 1.53119 * 109.16170 * 302.33740 * 18 17 16 20 20 C 1.46851 * 111.00086 * 175.00258 * 15 5 4 21 21 H 1.08999 * 109.47172 * 300.00375 * 1 2 3 22 22 H 1.09001 * 109.47052 * 59.99914 * 1 2 3 23 23 H 1.08999 * 109.47886 * 179.97438 * 1 2 3 24 24 H 1.08999 * 109.47172 * 239.99625 * 2 1 3 25 25 H 1.08999 * 109.47341 * 59.99729 * 3 2 1 26 26 H 1.09001 * 109.46698 * 180.02562 * 3 2 1 27 27 H 1.09000 * 109.46745 * 299.99683 * 3 2 1 28 28 H 1.09005 * 109.47253 * 54.99687 * 4 2 1 29 29 H 1.09005 * 109.46884 * 294.99537 * 4 2 1 30 30 H 0.96998 * 120.00124 * 180.02562 * 10 9 7 31 31 H 1.09000 * 109.46333 * 294.17640 * 16 15 5 32 32 H 1.09010 * 109.45881 * 54.14671 * 16 15 5 33 33 H 1.08997 * 109.50134 * 299.23829 * 17 16 15 34 34 H 1.09003 * 109.50338 * 179.12393 * 17 16 15 35 35 H 1.09001 * 109.51849 * 182.43798 * 18 17 16 36 36 H 1.09001 * 109.58004 * 62.28093 * 18 17 16 37 37 H 1.09000 * 109.50962 * 297.72180 * 19 18 17 38 38 H 1.08995 * 109.53387 * 177.61682 * 19 18 17 39 39 H 1.09006 * 109.45715 * 305.85812 * 20 15 5 40 40 H 1.08994 * 109.45920 * 65.83136 * 20 15 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 3.5647 -0.8310 1.1880 6 1 3.9953 0.1611 1.0528 7 6 4.0772 -1.4303 2.4723 8 1 4.6327 -2.3562 2.4524 9 6 3.8369 -0.7963 3.6729 10 7 4.2845 -1.3190 4.7937 11 14 2.8755 0.8049 3.7077 12 1 1.4277 0.5099 3.8578 13 1 3.1008 1.5452 2.4402 14 1 3.3333 1.6325 4.8525 15 7 3.9489 -1.6896 0.0597 16 6 3.4009 -3.0428 0.2176 17 6 3.6964 -3.8641 -1.0395 18 6 5.2107 -3.9287 -1.2567 19 6 5.7633 -2.5052 -1.3697 20 6 5.4080 -1.7233 -0.1031 21 1 -0.3633 0.5139 0.8899 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3635 -1.0276 -0.0005 24 1 1.8933 -0.5139 -0.8899 25 1 1.6767 1.9564 0.8899 26 1 3.1300 1.4424 -0.0005 27 1 1.6767 1.9563 -0.8900 28 1 1.6052 -1.7198 1.2952 29 1 1.7516 -0.1582 2.1370 30 1 4.1151 -0.8732 5.6384 31 1 3.8612 -3.5226 1.0813 32 1 2.3228 -2.9829 0.3671 33 1 3.2248 -3.3924 -1.9015 34 1 3.3031 -4.8732 -0.9157 35 1 5.4239 -4.4762 -2.1748 36 1 5.6794 -4.4356 -0.4132 37 1 5.3243 -2.0121 -2.2370 38 1 6.8468 -2.5428 -1.4822 39 1 5.7877 -0.7049 -0.1864 40 1 5.8587 -2.2093 0.7621 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259790775.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:02:03 Heat of formation + Delta-G solvation = -17.747721 kcal Electronic energy + Delta-G solvation = -17108.275548 eV Core-core repulsion = 14729.081315 eV Total energy + Delta-G solvation = -2379.194233 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -38.62737 -35.99137 -33.25110 -31.80164 -30.18490 -28.41242 -26.66068 -24.97534 -23.49534 -22.24987 -20.36409 -19.33564 -18.80869 -16.50652 -15.58866 -14.64864 -14.38567 -14.01687 -13.70022 -13.48134 -13.20733 -12.87472 -12.72459 -12.49260 -12.10465 -11.74977 -11.49158 -11.36068 -11.05974 -10.91902 -10.60596 -10.52671 -10.36605 -10.30637 -10.04560 -9.88915 -9.63869 -9.37158 -9.26694 -9.11088 -8.52232 -7.06995 -6.09173 -4.09364 3.27837 3.39079 3.41234 4.40082 4.94939 5.20418 5.37205 5.41278 5.47971 5.56565 5.58661 5.66839 5.88997 6.06975 6.10808 6.13773 6.18754 6.21032 6.30876 6.36711 6.39587 6.41056 6.49346 6.53506 6.54363 6.62482 6.70911 6.76214 6.81874 6.91796 6.97692 7.06912 7.20549 7.32764 7.61996 8.18395 8.25144 8.48897 8.93662 9.54660 11.03493 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.021547 B = 0.012460 C = 0.009294 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1299.179261 B = 2246.732672 C = 3011.873039 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.095 4.095 3 C -0.143 4.143 4 C -0.111 4.111 5 C 0.180 3.820 6 H 0.042 0.958 7 C -0.543 4.543 8 H 0.074 0.926 9 C 0.073 3.927 10 N -0.900 5.900 11 Si 0.880 3.120 12 H -0.280 1.280 13 H -0.253 1.253 14 H -0.301 1.301 15 N -0.525 5.525 16 C 0.058 3.942 17 C -0.116 4.116 18 C -0.118 4.118 19 C -0.115 4.115 20 C 0.062 3.938 21 H 0.045 0.955 22 H 0.044 0.956 23 H 0.049 0.951 24 H 0.080 0.920 25 H 0.043 0.957 26 H 0.060 0.940 27 H 0.040 0.960 28 H 0.058 0.942 29 H 0.047 0.953 30 H 0.262 0.738 31 H 0.041 0.959 32 H 0.068 0.932 33 H 0.060 0.940 34 H 0.053 0.947 35 H 0.050 0.950 36 H 0.056 0.944 37 H 0.061 0.939 38 H 0.054 0.946 39 H 0.061 0.939 40 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.726 -0.011 -11.119 11.449 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.113 4.113 3 C -0.200 4.200 4 C -0.148 4.148 5 C 0.073 3.927 6 H 0.060 0.940 7 C -0.581 4.581 8 H 0.092 0.908 9 C -0.130 4.130 10 N -0.538 5.538 11 Si 0.711 3.289 12 H -0.207 1.207 13 H -0.177 1.177 14 H -0.229 1.229 15 N -0.249 5.249 16 C -0.071 4.071 17 C -0.154 4.154 18 C -0.155 4.155 19 C -0.153 4.153 20 C -0.066 4.066 21 H 0.064 0.936 22 H 0.063 0.937 23 H 0.068 0.932 24 H 0.098 0.902 25 H 0.062 0.938 26 H 0.079 0.921 27 H 0.060 0.940 28 H 0.077 0.923 29 H 0.066 0.934 30 H 0.072 0.928 31 H 0.059 0.941 32 H 0.086 0.914 33 H 0.079 0.921 34 H 0.072 0.928 35 H 0.069 0.931 36 H 0.075 0.925 37 H 0.080 0.920 38 H 0.073 0.927 39 H 0.079 0.921 40 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -2.910 0.219 -11.356 11.725 hybrid contribution -0.206 0.456 1.162 1.265 sum -3.116 0.674 -10.194 10.681 Atomic orbital electron populations 1.21877 0.97055 1.00925 1.00491 1.21119 0.93674 0.96025 1.00491 1.21898 1.01724 0.96516 0.99907 1.22056 0.98331 0.99283 0.95169 1.19736 0.91245 0.93526 0.88236 0.94041 1.21653 1.35758 1.10284 0.90426 0.90754 1.24993 0.95184 0.97217 0.95557 1.69923 1.46154 1.39671 0.98058 0.86993 0.79862 0.84327 0.77755 1.20700 1.17699 1.22943 1.62312 1.09436 1.10231 1.42905 1.21949 0.99882 0.89773 0.95457 1.21611 0.95639 0.98912 0.99207 1.21533 0.96494 0.96984 1.00517 1.21595 0.99095 0.95593 0.98991 1.21850 0.89736 0.99223 0.95817 0.93585 0.93669 0.93177 0.90186 0.93771 0.92116 0.94041 0.92293 0.93442 0.92776 0.94085 0.91407 0.92076 0.92792 0.93075 0.92546 0.92032 0.92737 0.92078 0.94136 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.26 9.19 37.16 0.34 -1.92 16 2 C -0.09 -1.68 2.86 -90.62 -0.26 -1.94 16 3 C -0.14 -2.48 8.21 37.16 0.31 -2.18 16 4 C -0.11 -2.35 3.47 -26.73 -0.09 -2.44 16 5 C 0.18 4.10 1.20 -68.86 -0.08 4.02 16 6 H 0.04 0.99 5.34 -51.93 -0.28 0.72 16 7 C -0.54 -14.75 7.77 -34.44 -0.27 -15.02 16 8 H 0.07 2.23 6.08 -52.49 -0.32 1.91 16 9 C 0.07 2.07 5.45 -17.82 -0.10 1.97 16 10 N -0.90 -27.42 13.96 55.43 0.77 -26.64 16 11 Si 0.88 21.67 24.38 -169.99 -4.14 17.53 16 12 H -0.28 -6.81 6.83 56.52 0.39 -6.43 16 13 H -0.25 -5.80 5.00 56.52 0.28 -5.52 16 14 H -0.30 -7.57 7.11 56.52 0.40 -7.17 16 15 N -0.52 -10.53 4.01 -228.07 -0.92 -11.44 16 16 C 0.06 1.10 4.80 -3.83 -0.02 1.09 16 17 C -0.12 -1.80 6.09 -26.65 -0.16 -1.96 16 18 C -0.12 -1.74 6.00 -26.61 -0.16 -1.90 16 19 C -0.11 -1.77 6.09 -26.65 -0.16 -1.93 16 20 C 0.06 1.19 5.12 -3.83 -0.02 1.17 16 21 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 22 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 23 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 24 H 0.08 1.43 7.62 -51.93 -0.40 1.03 16 25 H 0.04 0.78 7.41 -51.93 -0.38 0.40 16 26 H 0.06 1.12 6.46 -51.93 -0.34 0.78 16 27 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 28 H 0.06 1.25 6.05 -51.93 -0.31 0.94 16 29 H 0.05 1.09 3.21 -51.93 -0.17 0.92 16 30 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 31 H 0.04 0.90 6.63 -51.93 -0.34 0.56 16 32 H 0.07 1.30 5.93 -51.92 -0.31 0.99 16 33 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 34 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 35 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 37 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 38 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 39 H 0.06 1.16 8.08 -51.93 -0.42 0.74 16 40 H 0.04 0.88 6.96 -51.93 -0.36 0.52 16 LS Contribution 287.07 15.07 4.33 4.33 Total: -1.00 -28.57 287.07 -7.76 -36.33 By element: Atomic # 1 Polarization: 8.07 SS G_CDS: -7.12 Total: 0.95 kcal Atomic # 6 Polarization: -20.37 SS G_CDS: -0.68 Total: -21.04 kcal Atomic # 7 Polarization: -37.95 SS G_CDS: -0.14 Total: -38.09 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -4.14 Total: 17.53 kcal Total LS contribution 4.33 Total: 4.33 kcal Total: -28.57 -7.76 -36.33 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259790775.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.581 kcal (2) G-P(sol) polarization free energy of solvation -28.569 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.988 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.760 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.328 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.748 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds