Wall clock time and date at job start Mon Mar 30 2020 04:02:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53003 * 109.47245 * 2 1 4 4 C 1.53001 * 109.46878 * 119.99936 * 2 1 3 5 5 C 1.53001 * 109.46975 * 175.00119 * 4 2 1 6 6 H 1.08997 * 109.47315 * 55.00184 * 5 4 2 7 7 C 1.50699 * 109.47030 * 175.00142 * 5 4 2 8 8 H 1.07999 * 120.00803 * 119.99828 * 7 5 4 9 9 C 1.37881 * 119.99889 * 299.99649 * 7 5 4 10 10 N 1.31520 * 120.00186 * 180.02562 * 9 7 5 11 11 Si 1.86798 * 120.00030 * 0.02562 * 9 7 5 12 12 H 1.48506 * 109.47297 * 89.99863 * 11 9 7 13 13 H 1.48503 * 109.47261 * 330.00044 * 11 9 7 14 14 H 1.48500 * 109.47454 * 210.00037 * 11 9 7 15 15 N 1.46900 * 109.46971 * 294.99505 * 5 4 2 16 16 C 1.46849 * 111.00313 * 299.21130 * 15 5 4 17 17 C 1.53036 * 109.52292 * 174.15781 * 16 15 5 18 18 C 1.53116 * 109.27508 * 59.18396 * 17 16 15 19 19 C 1.53119 * 109.16170 * 302.33740 * 18 17 16 20 20 C 1.46851 * 111.00086 * 175.00258 * 15 5 4 21 21 H 1.08999 * 109.47172 * 300.00375 * 1 2 3 22 22 H 1.09001 * 109.47052 * 59.99914 * 1 2 3 23 23 H 1.08999 * 109.47886 * 179.97438 * 1 2 3 24 24 H 1.08999 * 109.47172 * 239.99625 * 2 1 3 25 25 H 1.08999 * 109.47341 * 59.99729 * 3 2 1 26 26 H 1.09001 * 109.46698 * 180.02562 * 3 2 1 27 27 H 1.09000 * 109.46745 * 299.99683 * 3 2 1 28 28 H 1.09005 * 109.47253 * 54.99687 * 4 2 1 29 29 H 1.09005 * 109.46884 * 294.99537 * 4 2 1 30 30 H 0.96998 * 120.00124 * 180.02562 * 10 9 7 31 31 H 1.09000 * 109.46333 * 294.17640 * 16 15 5 32 32 H 1.09010 * 109.45881 * 54.14671 * 16 15 5 33 33 H 1.08997 * 109.50134 * 299.23829 * 17 16 15 34 34 H 1.09003 * 109.50338 * 179.12393 * 17 16 15 35 35 H 1.09001 * 109.51849 * 182.43798 * 18 17 16 36 36 H 1.09001 * 109.58004 * 62.28093 * 18 17 16 37 37 H 1.09000 * 109.50962 * 297.72180 * 19 18 17 38 38 H 1.08995 * 109.53387 * 177.61682 * 19 18 17 39 39 H 1.09006 * 109.45715 * 305.85812 * 20 15 5 40 40 H 1.08994 * 109.45920 * 65.83136 * 20 15 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 3.5647 -0.8310 1.1880 6 1 3.9953 0.1611 1.0528 7 6 4.0772 -1.4303 2.4723 8 1 4.6327 -2.3562 2.4524 9 6 3.8369 -0.7963 3.6729 10 7 4.2845 -1.3190 4.7937 11 14 2.8755 0.8049 3.7077 12 1 1.4277 0.5099 3.8578 13 1 3.1008 1.5452 2.4402 14 1 3.3333 1.6325 4.8525 15 7 3.9489 -1.6896 0.0597 16 6 3.4009 -3.0428 0.2176 17 6 3.6964 -3.8641 -1.0395 18 6 5.2107 -3.9287 -1.2567 19 6 5.7633 -2.5052 -1.3697 20 6 5.4080 -1.7233 -0.1031 21 1 -0.3633 0.5139 0.8899 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3635 -1.0276 -0.0005 24 1 1.8933 -0.5139 -0.8899 25 1 1.6767 1.9564 0.8899 26 1 3.1300 1.4424 -0.0005 27 1 1.6767 1.9563 -0.8900 28 1 1.6052 -1.7198 1.2952 29 1 1.7516 -0.1582 2.1370 30 1 4.1151 -0.8732 5.6384 31 1 3.8612 -3.5226 1.0813 32 1 2.3228 -2.9829 0.3671 33 1 3.2248 -3.3924 -1.9015 34 1 3.3031 -4.8732 -0.9157 35 1 5.4239 -4.4762 -2.1748 36 1 5.6794 -4.4356 -0.4132 37 1 5.3243 -2.0121 -2.2370 38 1 6.8468 -2.5428 -1.4822 39 1 5.7877 -0.7049 -0.1864 40 1 5.8587 -2.2093 0.7621 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259790775.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:02:03 Heat of formation + Delta-G solvation = -35.623052 kcal Electronic energy + Delta-G solvation = -17109.050680 eV Core-core repulsion = 14729.081315 eV Total energy + Delta-G solvation = -2379.969365 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.22863 -37.44572 -35.02267 -33.65779 -31.62378 -30.10563 -27.95884 -26.88392 -25.06655 -23.69459 -22.00400 -20.77472 -20.49812 -18.50132 -17.31343 -16.23441 -16.13817 -15.49754 -15.13949 -15.00761 -14.81793 -14.47208 -14.20198 -14.13293 -13.59116 -13.23014 -13.05351 -12.92213 -12.66597 -12.58505 -12.19836 -12.00805 -11.94688 -11.82326 -11.51468 -11.49303 -11.19810 -10.98644 -10.91131 -10.88720 -10.61912 -8.85806 -8.32198 -6.35637 1.28626 1.34304 1.45369 2.30366 3.03547 3.34715 4.04793 4.06251 4.17081 4.19378 4.22417 4.28309 4.49619 4.66609 4.69720 4.70032 4.82845 4.89140 4.92219 4.94953 5.03360 5.07589 5.09459 5.13347 5.18446 5.19493 5.23626 5.30213 5.34725 5.38866 5.49302 5.54743 5.62985 5.66812 5.72207 6.18604 6.44186 6.57805 6.74325 7.32655 8.84186 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.021547 B = 0.012460 C = 0.009294 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1299.179261 B = 2246.732672 C = 3011.873039 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.089 4.089 3 C -0.144 4.144 4 C -0.108 4.108 5 C 0.185 3.815 6 H 0.036 0.964 7 C -0.536 4.536 8 H 0.030 0.970 9 C 0.013 3.987 10 N -0.952 5.952 11 Si 0.941 3.059 12 H -0.272 1.272 13 H -0.226 1.226 14 H -0.308 1.308 15 N -0.512 5.512 16 C 0.059 3.941 17 C -0.108 4.108 18 C -0.117 4.117 19 C -0.106 4.106 20 C 0.059 3.941 21 H 0.041 0.959 22 H 0.071 0.929 23 H 0.054 0.946 24 H 0.084 0.916 25 H 0.038 0.962 26 H 0.045 0.955 27 H 0.071 0.929 28 H 0.051 0.949 29 H 0.032 0.968 30 H 0.263 0.737 31 H -0.001 1.001 32 H 0.066 0.934 33 H 0.078 0.922 34 H 0.071 0.929 35 H 0.085 0.915 36 H 0.039 0.961 37 H 0.078 0.922 38 H 0.072 0.928 39 H 0.060 0.940 40 H 0.001 0.999 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.097 0.943 -14.229 14.837 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.107 4.107 3 C -0.201 4.201 4 C -0.146 4.146 5 C 0.077 3.923 6 H 0.054 0.946 7 C -0.575 4.575 8 H 0.048 0.952 9 C -0.184 4.184 10 N -0.592 5.592 11 Si 0.768 3.232 12 H -0.198 1.198 13 H -0.149 1.149 14 H -0.236 1.236 15 N -0.236 5.236 16 C -0.069 4.069 17 C -0.145 4.145 18 C -0.155 4.155 19 C -0.143 4.143 20 C -0.069 4.069 21 H 0.060 0.940 22 H 0.090 0.910 23 H 0.073 0.927 24 H 0.102 0.898 25 H 0.057 0.943 26 H 0.064 0.936 27 H 0.090 0.910 28 H 0.070 0.930 29 H 0.050 0.950 30 H 0.071 0.929 31 H 0.017 0.983 32 H 0.084 0.916 33 H 0.097 0.903 34 H 0.089 0.911 35 H 0.103 0.897 36 H 0.058 0.942 37 H 0.096 0.904 38 H 0.091 0.909 39 H 0.078 0.922 40 H 0.019 0.981 Dipole moment (debyes) X Y Z Total from point charges -4.282 1.165 -14.502 15.166 hybrid contribution 0.298 0.058 2.133 2.154 sum -3.984 1.223 -12.369 13.053 Atomic orbital electron populations 1.21836 0.94870 1.01667 1.01618 1.21054 0.95491 0.95909 0.98250 1.21899 1.00771 0.96263 1.01183 1.21950 0.96594 0.99346 0.96674 1.19617 0.92597 0.93300 0.86829 0.94591 1.21947 1.34316 1.08489 0.92709 0.95212 1.25850 0.96500 1.00951 0.95095 1.70082 1.48566 1.41758 0.98827 0.86022 0.78541 0.80117 0.78504 1.19836 1.14924 1.23608 1.62386 1.10020 1.10395 1.40776 1.21983 0.99253 0.89470 0.96243 1.21574 0.96526 0.99134 0.97313 1.21556 0.95656 0.96787 1.01504 1.21550 1.00514 0.95364 0.96908 1.21939 0.88851 0.99533 0.96611 0.93976 0.91024 0.92737 0.89798 0.94328 0.93615 0.90977 0.93002 0.94965 0.92867 0.98289 0.91559 0.90346 0.91076 0.89656 0.94218 0.90363 0.90906 0.92196 0.98095 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.89 9.19 71.98 0.66 -3.23 16 2 C -0.09 -2.90 2.86 -10.79 -0.03 -2.93 16 3 C -0.14 -4.51 8.21 71.98 0.59 -3.92 16 4 C -0.11 -4.47 3.47 30.59 0.11 -4.37 16 5 C 0.19 8.49 1.20 44.17 0.05 8.54 16 6 H 0.04 1.72 5.34 -2.39 -0.01 1.70 16 7 C -0.54 -30.51 7.77 25.60 0.20 -30.31 16 8 H 0.03 1.92 6.08 -2.91 -0.02 1.90 16 9 C 0.01 0.78 5.45 84.65 0.46 1.24 16 10 N -0.95 -60.77 13.96 21.45 0.30 -60.47 16 11 Si 0.94 45.43 24.38 68.60 1.67 47.10 16 12 H -0.27 -12.71 6.83 99.48 0.68 -12.03 16 13 H -0.23 -9.84 5.00 99.48 0.50 -9.34 16 14 H -0.31 -15.08 7.11 99.48 0.71 -14.37 16 15 N -0.51 -20.46 4.01 -875.48 -3.51 -23.97 16 16 C 0.06 2.27 4.80 86.33 0.41 2.68 16 17 C -0.11 -3.10 6.09 30.65 0.19 -2.91 16 18 C -0.12 -3.20 6.00 30.67 0.18 -3.02 16 19 C -0.11 -3.02 6.09 30.65 0.19 -2.83 16 20 C 0.06 2.28 5.12 86.33 0.44 2.72 16 21 H 0.04 1.18 8.14 -2.39 -0.02 1.16 16 22 H 0.07 1.59 8.14 -2.39 -0.02 1.58 16 23 H 0.05 1.43 8.14 -2.39 -0.02 1.41 16 24 H 0.08 2.70 7.62 -2.39 -0.02 2.68 16 25 H 0.04 1.24 7.41 -2.39 -0.02 1.22 16 26 H 0.04 1.55 6.46 -2.39 -0.02 1.54 16 27 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 28 H 0.05 2.19 6.05 -2.38 -0.01 2.17 16 29 H 0.03 1.43 3.21 -2.38 -0.01 1.43 16 30 H 0.26 15.82 8.31 -92.71 -0.77 15.05 16 31 H 0.00 -0.06 6.63 -2.39 -0.02 -0.07 16 32 H 0.07 2.54 5.93 -2.38 -0.01 2.52 16 33 H 0.08 2.05 8.14 -2.39 -0.02 2.03 16 34 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 35 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 36 H 0.04 1.21 8.14 -2.39 -0.02 1.19 16 37 H 0.08 2.03 8.14 -2.39 -0.02 2.01 16 38 H 0.07 1.83 8.14 -2.39 -0.02 1.82 16 39 H 0.06 2.27 8.08 -2.38 -0.02 2.26 16 40 H 0.00 0.03 6.96 -2.39 -0.02 0.02 16 Total: -1.00 -65.07 287.07 2.66 -62.41 By element: Atomic # 1 Polarization: 12.51 SS G_CDS: 0.75 Total: 13.26 kcal Atomic # 6 Polarization: -41.78 SS G_CDS: 3.46 Total: -38.33 kcal Atomic # 7 Polarization: -81.23 SS G_CDS: -3.22 Total: -84.44 kcal Atomic # 14 Polarization: 45.43 SS G_CDS: 1.67 Total: 47.10 kcal Total: -65.07 2.66 -62.41 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259790775.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.789 kcal (2) G-P(sol) polarization free energy of solvation -65.074 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.285 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.662 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.412 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.623 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds